Rmu_sc0005697.1_g000030

YIF1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005697.1
OG0017243
Physical Location & Seq
Reverse (-)
116948 .. 118761
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005697.1_g000030.1.cds

Sequence Viewer

Length: 822 bp
atgggacacttttcagctacggatgagaatctaggattccagtctggagttcccgtaccgggactgaatcctccatcaaatcagtttggaaatgcattttgtggagctgggtcgggactcattcgagagggattgggtgcttatggtaagagaatttgtggatcaagttcacagtatgtgcaaagcaatataattaagtgcttctcggatcctcaatactacttccaagtgaatgcgcactatgtcaggaacaaactgaagataattctatttccatttcttcacaggggacactggaccaggataacagagccaattggaggcaggctttcctataatcctccaattaatgatataaatgctccagatttatacattccattcatgacatttgcgacatacttggttcttgctggcatctctctcggcctttctgggaatccagaagccttaaattggcagtttgtgaaaggaatggcaagctggttattccaagcaatgttgttgaaggcatcattgacttcgctaggcggtggagaggcaccattgttggacatgatagcatatgcagggtatacattcacggggctgtgtgtggctgttgtagggagaattacattaagctatgcgtactacttgatagtcatatggacatccatgtgctcaggcatcttcttggctaagacgattaagctaactttgtatgccgaggctaggagttacgatgtcaccatccataactatctcttacttggtattgcattttctccattcccattcatcttctgcctgagcaaccctaccgggaattggatttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YIF1

Protein Analysis

273

Amino Acids

29.94

Weight (kDa)

8.68

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017243)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17570
malus_domestica MD10G1149100.v1.1
prunus_persica Prupe.8G187900_v2.0.a1
pyrus_communis pycom10g12870
rosa_chinensis RchiOBHm_Chr6g0282511
rosa_multiflora Rmu_sc0000283.1_g000013 Rmu_sc0005697.1_g000030
rosa_roxburghii Rroxscaffold_7G00186300
rosa_rugosa Rorug06G0147000
rosa_samantha Rh6AG260400 Rh6CG262600 Rh6DG254500
rosa_wichuraiana Rw6G022510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 541
AccI GTMKAC 1 cut(s) 575
AciI CCGC 1 cut(s) 531
AclWI GGATC 3 cut(s) 169, 203, 216
AcsI RAATTY 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 278
AfaI GTAC 2 cut(s) 57, 632
AfiI CCNNNNNNNGG 5 cut(s) 59, 320, 456, 714, 810
AgsI TTSAA 1 cut(s) 508
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 5 cut(s) 17, 107, 483, 624, 694
AluI AGCT 5 cut(s) 17, 107, 483, 624, 694
Alw21I GWGCWC 1 cut(s) 665
AlwI GGATC 3 cut(s) 169, 203, 216
AoxI GGCC 1 cut(s) 427
ApoI RAATTY 1 cut(s) 153
AseI ATTAAT 1 cut(s) 348
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 297
AsuC2I CCSGG 2 cut(s) 60, 805
AsuHPI GGTGA 1 cut(s) 721
AvaII GGWCC 1 cut(s) 297
BamHI GGATCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 541
Bbv12I GWGCWC 1 cut(s) 665
BccI CCATC 2 cut(s) 82, 740
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BciT130I CCWGG 1 cut(s) 301
BcnI CCSGG 2 cut(s) 60, 805
BfaI CTAG 3 cut(s) 32, 527, 714
Bme1390I CCNGG 3 cut(s) 60, 301, 805
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 210, 543
BmrFI CCNGG 3 cut(s) 60, 301, 805
BmsI GCATC 3 cut(s) 426, 521, 678
BpmI CTGGAG 2 cut(s) 66, 348
Bpu10I CCTNAGC 2 cut(s) 664, 791
BpuMI CCSGG 2 cut(s) 60, 805
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 708
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 320, 456, 714, 810
Bse1I ACTGG 2 cut(s) 40, 299
Bse3DI GCAATG 1 cut(s) 504
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 708
BseGI GGATG 3 cut(s) 28, 653, 732
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 5 cut(s) 59, 320, 456, 714, 810
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 2 cut(s) 678, 782
BseNI ACTGG 2 cut(s) 40, 299
BseYI CCCAGC 1 cut(s) 107
BshFI GGCC 1 cut(s) 429
BshNI GGYRCC 1 cut(s) 541
BsiHKAI GWGCWC 1 cut(s) 665
BsiSI CCGG 2 cut(s) 59, 804
BslFI GGGAC 4 cut(s) 18, 75, 129, 303
BslI CCNNNNNNNGG 5 cut(s) 59, 320, 456, 714, 810
BsmFI GGGAC 4 cut(s) 18, 75, 129, 303
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 665
Bsp143I GATC 2 cut(s) 161, 208
BspACI CCGC 1 cut(s) 531
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 2 cut(s) 677, 783
BspHI TCATGA 1 cut(s) 384
BspLI GGNNCC 2 cut(s) 210, 543
BspPI GGATC 3 cut(s) 169, 203, 216
BspT107I GGYRCC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 504
BsrI ACTGG 2 cut(s) 40, 299
BssECI CCNNGG 1 cut(s) 708
BssMI GATC 2 cut(s) 161, 208
BssNAI GTATAC 1 cut(s) 576
Bst1107I GTATAC 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 326, 415, 481
BstDEI CTNAG 3 cut(s) 664, 681, 791
BstF5I GGATG 3 cut(s) 28, 653, 732
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 2 cut(s) 164, 211
BstMBI GATC 2 cut(s) 161, 208
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 3 cut(s) 58, 299, 803
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BstZ17I GTATAC 1 cut(s) 576
BsuRI GGCC 1 cut(s) 429
BtsCI GGATG 3 cut(s) 28, 653, 732
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 3 cut(s) 326, 415, 481
CciI TCATGA 1 cut(s) 384
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 2 cut(s) 56, 631
CviAII CATG 3 cut(s) 385, 556, 658
CviQI GTAC 2 cut(s) 56, 631
DdeI CTNAG 3 cut(s) 664, 681, 791
DpnI GATC 2 cut(s) 163, 210
DpnII GATC 2 cut(s) 161, 208
Eco47I GGWCC 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 299
EcoT22I ATGCAT 1 cut(s) 97
FaeI CATG 3 cut(s) 388, 559, 661
FaqI GGGAC 4 cut(s) 18, 75, 129, 303
FatI CATG 3 cut(s) 384, 555, 657
FauNDI CATATG 2 cut(s) 565, 647
FblI GTMKAC 1 cut(s) 575
FokI GGATG 3 cut(s) 35, 640, 719
FspAI RTGCGCAY 1 cut(s) 237
FspBI CTAG 3 cut(s) 32, 527, 714
FspI TGCGCA 1 cut(s) 237
GlaI GCGC 1 cut(s) 237
GsaI CCCAGC 1 cut(s) 111
GsuI CTGGAG 2 cut(s) 66, 348
HaeIII GGCC 1 cut(s) 429
HapII CCGG 2 cut(s) 59, 804
HhaI GCGC 1 cut(s) 238
Hin1II CATG 3 cut(s) 388, 559, 661
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 5 cut(s) 28, 36, 67, 117, 439
HpaII CCGG 2 cut(s) 59, 804
HphI GGTGA 1 cut(s) 721
Hpy166II GTNNAC 2 cut(s) 170, 576
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 8 cut(s) 45, 114, 125, 247, 365, 385, 443, 819
Hpy8I GTNNAC 2 cut(s) 170, 576
HpyAV CCTTC 1 cut(s) 502
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 4 cut(s) 95, 181, 569, 761
HpyF3I CTNAG 3 cut(s) 664, 681, 791
Hsp92II CATG 3 cut(s) 388, 559, 661
HspAI GCGC 1 cut(s) 236
Kzo9I GATC 2 cut(s) 161, 208
LmnI GCTCC 2 cut(s) 104, 367
LweI GCATC 3 cut(s) 426, 521, 678
MaeI CTAG 3 cut(s) 32, 527, 714
MaeIII GTNAC 2 cut(s) 719, 727
MalI GATC 2 cut(s) 163, 210
MboI GATC 2 cut(s) 161, 208
MboII GAAGA 4 cut(s) 271, 272, 664, 775
MfeI CAATTG 1 cut(s) 315
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 665
MluCI AATT 8 cut(s) 153, 192, 264, 315, 345, 454, 612, 808
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 531
MnlI CCTC 7 cut(s) 81, 121, 222, 314, 351, 532, 703
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 5 cut(s) 195, 348, 452, 620, 690
MslI CAYNNNNRTG 1 cut(s) 658
MspI CCGG 2 cut(s) 59, 804
MspR9I CCNGG 3 cut(s) 60, 301, 805
MunI CAATTG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 238
MvaI CCWGG 1 cut(s) 301
NciI CCSGG 2 cut(s) 60, 805
NdeI CATATG 2 cut(s) 565, 647
NdeII GATC 2 cut(s) 161, 208
NlaIII CATG 3 cut(s) 388, 559, 661
NlaIV GGNNCC 2 cut(s) 210, 543
NmeAIII GCCGAG 2 cut(s) 405, 733
NmuCI GTSAC 1 cut(s) 727
NsbI TGCGCA 1 cut(s) 237
NsiI ATGCAT 1 cut(s) 97
PagI TCATGA 1 cut(s) 384
PctI GAATGC 1 cut(s) 238
PfeI GAWTC 4 cut(s) 28, 36, 67, 439
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PshBI ATTAAT 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 299
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 210, 543
PspPI GGNCC 1 cut(s) 297
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 2 cut(s) 57, 632
RsaNI GTAC 2 cut(s) 56, 631
RseI CAYNNNNRTG 1 cut(s) 658
SaqAI TTAA 5 cut(s) 195, 348, 452, 620, 690
Sau3AI GATC 2 cut(s) 161, 208
Sau96I GGNCC 1 cut(s) 297
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 3 cut(s) 60, 301, 805
SduI GDGCHC 1 cut(s) 665
SetI ASST 5 cut(s) 19, 109, 485, 626, 696
SfaNI GCATC 3 cut(s) 426, 521, 678
SinI GGWCC 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 658
Sse9I AATT 8 cut(s) 153, 192, 264, 315, 345, 454, 612, 808
SsiI CCGC 1 cut(s) 531
SspMI CTAG 3 cut(s) 32, 527, 714
StyD4I CCNGG 3 cut(s) 58, 299, 803
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 124
TasI AATT 8 cut(s) 153, 192, 264, 315, 345, 454, 612, 808
TfiI GAWTC 4 cut(s) 28, 36, 67, 439
Tru1I TTAA 5 cut(s) 195, 348, 452, 620, 690
Tru9I TTAA 5 cut(s) 195, 348, 452, 620, 690
TscAI CASTG 1 cut(s) 299
TseFI GTSAC 1 cut(s) 727
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 2 cut(s) 373, 769
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 297
VspI ATTAAT 1 cut(s) 348
XapI RAATTY 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 575
XspI CTAG 3 cut(s) 32, 527, 714
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.