RchiOBHm_Chr6g0282511

YIF1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017243
Physical Location & Seq
Forward (+)
45787354 .. 45788969
1616 bp
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UTR
Exon/CDS
Intron
PRQ25329

Sequence Viewer

Length: 816 bp
ATGTCTACGGATGAGAATCTAGGATTCCAGTCTGGAGTTCCCATACCGGGACTGAATCCTCCATCAAATCAGTTTGGAAATGCATTTTGTGGAGCTGGGTCGGGACTCATTCGAGAGGGATTGGGTGCTTATGGGAAGAGAATTTGTGGATCAAGTTCACAGTATGTGCAAAGCAATATAATTAAGTGCTTCTCGGATCCTCAATACTACTTCCAAGTGAATGCGCACTACGTCAGGAACAAACTGAAGATAATTCTATTTCCATTTCTTCACAGGGGACACTGGACCAGGATAACAGAGCCAATTGGAGGCAGGCTTTCCTATAATCCTCCAATTAATGATATAAATGCTCCAGATTTATACATTCCATTCATGACATTTGCAACATACTTGGTTCTTGCTGGCATCTCTCTCGGCCTTTCTGGGAAATTTAGTCCAGAAGCCTTAAATTGGCAGTTTGTGAAAGGAATGGCAAGCTGGTTATTCCAAGCAATGTTGTTGAAGGCATCATTGACTTCGCTAGGCGGTGGAGAGGCACCATTGTTGGACATGATAGCATATGCTGGGTATACATTCACGGGGCTGTGCGTGGCTGTTGTAGGGAGAATTACATTAAGCTATGCGTACTACTTGATAGTCATATGGACATCCATGTGCTCAGGTATCTTCTTGGCTAAGACGATTAAGCTAACTTTGTATGCCGAGGCTAGGAGTTACGATGTCACCATCCACAACTATCTCTTGCTTGGTATTGCATTTTCTCCATTCCCATTCATCTTCTGCCTGAGCAACCCTACCGGGAATTGGATTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YIF1

Protein Analysis

271

Amino Acids

29.79

Weight (kDa)

8.83

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YIF1 PF03878 43 - 240 1.5e-50 YIF1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017243)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17570
malus_domestica MD10G1149100.v1.1
prunus_persica Prupe.8G187900_v2.0.a1
pyrus_communis pycom10g12870
rosa_chinensis RchiOBHm_Chr6g0282511
rosa_multiflora Rmu_sc0000283.1_g000013 Rmu_sc0005697.1_g000030
rosa_roxburghii Rroxscaffold_7G00186300
rosa_rugosa Rorug06G0147000
rosa_samantha Rh6AG260400 Rh6CG262600 Rh6DG254500
rosa_wichuraiana Rw6G022510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 535
AccI GTMKAC 2 cut(s) 5, 569
AciI CCGC 1 cut(s) 525
AclWI GGATC 3 cut(s) 157, 191, 204
AcsI RAATTY 2 cut(s) 141, 428
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 5 cut(s) 47, 308, 450, 708, 804
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 4 cut(s) 95, 477, 618, 688
AluI AGCT 4 cut(s) 95, 477, 618, 688
Alw21I GWGCWC 1 cut(s) 659
AlwI GGATC 3 cut(s) 157, 191, 204
AoxI GGCC 1 cut(s) 415
ApoI RAATTY 2 cut(s) 141, 428
AseI ATTAAT 1 cut(s) 336
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 285
AsuC2I CCSGG 2 cut(s) 48, 799
AsuHPI GGTGA 1 cut(s) 715
AvaII GGWCC 1 cut(s) 285
BamHI GGATCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 659
BccI CCATC 2 cut(s) 70, 734
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BciT130I CCWGG 1 cut(s) 289
BcnI CCSGG 2 cut(s) 48, 799
BfaI CTAG 3 cut(s) 20, 521, 708
Bme1390I CCNGG 3 cut(s) 48, 289, 799
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 2 cut(s) 198, 537
BmrFI CCNGG 3 cut(s) 48, 289, 799
BmsI GCATC 2 cut(s) 414, 515
BpmI CTGGAG 2 cut(s) 54, 336
Bpu10I CCTNAGC 2 cut(s) 658, 785
BpuMI CCSGG 2 cut(s) 48, 799
BsaBI GATNNNNATC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 702
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 308, 450, 708, 804
Bse1I ACTGG 2 cut(s) 28, 287
Bse3DI GCAATG 1 cut(s) 498
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 702
BseGI GGATG 3 cut(s) 16, 647, 726
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 5 cut(s) 47, 308, 450, 708, 804
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 2 cut(s) 672, 776
BseNI ACTGG 2 cut(s) 28, 287
BseYI CCCAGC 2 cut(s) 95, 563
BshFI GGCC 1 cut(s) 417
BshNI GGYRCC 1 cut(s) 535
BsiHKAI GWGCWC 1 cut(s) 659
BsiSI CCGG 2 cut(s) 47, 798
BslFI GGGAC 3 cut(s) 63, 117, 291
BslI CCNNNNNNNGG 5 cut(s) 47, 308, 450, 708, 804
BsmFI GGGAC 3 cut(s) 63, 117, 291
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 659
Bsp143I GATC 2 cut(s) 149, 196
BspACI CCGC 1 cut(s) 525
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 2 cut(s) 671, 777
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 2 cut(s) 198, 537
BspPI GGATC 3 cut(s) 157, 191, 204
BspT107I GGYRCC 1 cut(s) 535
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 2 cut(s) 28, 287
BssECI CCNNGG 1 cut(s) 702
BssMI GATC 2 cut(s) 149, 196
BssNAI GTATAC 1 cut(s) 570
Bst1107I GTATAC 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 3 cut(s) 314, 403, 475
BstDEI CTNAG 3 cut(s) 658, 675, 785
BstF5I GGATG 3 cut(s) 16, 647, 726
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 152, 199
BstMBI GATC 2 cut(s) 149, 196
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 3 cut(s) 46, 287, 797
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BstZ17I GTATAC 1 cut(s) 570
BsuRI GGCC 1 cut(s) 417
BtsCI GGATG 3 cut(s) 16, 647, 726
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 3 cut(s) 314, 403, 475
CciI TCATGA 1 cut(s) 372
CfoI GCGC 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 625
CviAII CATG 3 cut(s) 373, 550, 652
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 3 cut(s) 658, 675, 785
DpnI GATC 2 cut(s) 151, 198
DpnII GATC 2 cut(s) 149, 196
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 85
FaeI CATG 3 cut(s) 376, 553, 655
FaqI GGGAC 3 cut(s) 63, 117, 291
FatI CATG 3 cut(s) 372, 549, 651
FauNDI CATATG 2 cut(s) 559, 641
FblI GTMKAC 2 cut(s) 5, 569
FokI GGATG 3 cut(s) 23, 634, 713
FspAI RTGCGCAY 1 cut(s) 225
FspBI CTAG 3 cut(s) 20, 521, 708
FspI TGCGCA 1 cut(s) 225
GlaI GCGC 1 cut(s) 225
GsaI CCCAGC 2 cut(s) 99, 567
GsuI CTGGAG 2 cut(s) 54, 336
HaeIII GGCC 1 cut(s) 417
HapII CCGG 2 cut(s) 47, 798
HhaI GCGC 1 cut(s) 226
Hin1II CATG 3 cut(s) 376, 553, 655
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 4 cut(s) 16, 24, 55, 105
HpaII CCGG 2 cut(s) 47, 798
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 3 cut(s) 6, 158, 570
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 8 cut(s) 33, 102, 113, 235, 353, 373, 437, 813
Hpy8I GTNNAC 3 cut(s) 6, 158, 570
HpyAV CCTTC 1 cut(s) 496
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 83, 169, 383, 755
HpyF3I CTNAG 3 cut(s) 658, 675, 785
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 3 cut(s) 376, 553, 655
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 2 cut(s) 149, 196
LmnI GCTCC 2 cut(s) 92, 355
LweI GCATC 2 cut(s) 414, 515
MaeI CTAG 3 cut(s) 20, 521, 708
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 713, 721
MalI GATC 2 cut(s) 151, 198
MboI GATC 2 cut(s) 149, 196
MboII GAAGA 5 cut(s) 148, 259, 260, 658, 769
MfeI CAATTG 1 cut(s) 303
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 659
MluCI AATT 9 cut(s) 141, 180, 252, 303, 333, 428, 448, 606, 802
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 7 cut(s) 69, 109, 210, 302, 339, 526, 697
Mph1103I ATGCAT 1 cut(s) 85
MseI TTAA 5 cut(s) 183, 336, 446, 614, 684
MslI CAYNNNNRTG 1 cut(s) 652
MspI CCGG 2 cut(s) 47, 798
MspR9I CCNGG 3 cut(s) 48, 289, 799
MunI CAATTG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 289
NciI CCSGG 2 cut(s) 48, 799
NdeI CATATG 2 cut(s) 559, 641
NdeII GATC 2 cut(s) 149, 196
NlaIII CATG 3 cut(s) 376, 553, 655
NlaIV GGNNCC 2 cut(s) 198, 537
NmeAIII GCCGAG 2 cut(s) 393, 727
NmuCI GTSAC 1 cut(s) 721
NsbI TGCGCA 1 cut(s) 225
NsiI ATGCAT 1 cut(s) 85
PagI TCATGA 1 cut(s) 372
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 16, 24, 55
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PshBI ATTAAT 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 287
PspFI CCCAGC 2 cut(s) 95, 563
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 198, 537
PspPI GGNCC 1 cut(s) 285
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
RseI CAYNNNNRTG 1 cut(s) 652
SaqAI TTAA 5 cut(s) 183, 336, 446, 614, 684
Sau3AI GATC 2 cut(s) 149, 196
Sau96I GGNCC 1 cut(s) 285
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 3 cut(s) 48, 289, 799
SduI GDGCHC 1 cut(s) 659
SetI ASST 6 cut(s) 97, 234, 479, 620, 664, 690
SfaNI GCATC 2 cut(s) 414, 515
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 652
Sse9I AATT 9 cut(s) 141, 180, 252, 303, 333, 428, 448, 606, 802
SsiI CCGC 1 cut(s) 525
SspMI CTAG 3 cut(s) 20, 521, 708
StyD4I CCNGG 3 cut(s) 46, 287, 797
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 112
TasI AATT 9 cut(s) 141, 180, 252, 303, 333, 428, 448, 606, 802
TfiI GAWTC 3 cut(s) 16, 24, 55
Tru1I TTAA 5 cut(s) 183, 336, 446, 614, 684
Tru9I TTAA 5 cut(s) 183, 336, 446, 614, 684
TscAI CASTG 1 cut(s) 287
TseFI GTSAC 1 cut(s) 721
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 2 cut(s) 361, 763
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 285
VspI ATTAAT 1 cut(s) 336
XapI RAATTY 2 cut(s) 141, 428
XmiI GTMKAC 2 cut(s) 5, 569
XspI CTAG 3 cut(s) 20, 521, 708
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.