Prupe.8G187900_v2.0.a1

YIF1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0017243
Physical Location & Seq
Forward (+)
18450961 .. 18452855
1895 bp
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UTR
Exon/CDS
Intron
Prupe.8G187900.1

Sequence Viewer

Length: 888 bp
ATGCTTTTCAGAAACCCAAACCATTGGCTTTCCTTGTGGCTGAAGTTACAAGAAACCAAAATGCCGGCTTCGATAAGCATGGATGAGAATCTAGGATTCCAGTCTGGACTTTCCAGACCAGGGCTGAATCCCCCATCAGTTCAATTTGAGAATGGATTTTGTGAAGCTAGCTCAGAACTCATCCGAGGTGGATTGGGTGCATATGGAAAGAGAATTTGTGGGTCAAGTTCTCAGTATGTGCAAAGCAATATATGCAAGTACTTCTCAGATCCTCAATACTACTTCCAAGTGAACGCTCACTATGTCAGGAACAAACTGAAGATAATTTTGTTTCCATTTCTGCACAGAGGGCATTGGACGAGGAGAACGGAGCCAGTTGGAGGCAGGCTTTCTTATAAACCTCCAATCACTGACATACATGCTCCAGATTTATACATTCCATTCATGACATTTGCAACATACTTGGTTCTTGCTGGCATCTCACTAGGCCTCTCTGGGAAATTTAGCCCGGAAGCCATAAATTGGCAGTTTGTGAAGGGGATGATAGGCTGGCTGCTTCAAGTGATGCTGCTAAAGGCATCGTTGTCTTCGCTGGGGGGCGGAGAGGCACCTTTGCTGGACATGATAGCATATACTGGTTACACTTTCACAGGGCTGTGTGTGGCTGTTCTAGGGCGAATCACATTGAGCTATGCATATTACTTGATAATCATATGGACATCCATGTGCTCAGGCATCTTCCTGGCAAAGACAATCAAGATAACTTTGTATGCTGAGCTCCATAGTTATGATGCAAACATGCATCACTATCTCTTGCTTGGTATCGCATTTTCACAGTTCCCGTTGATTATCTGGCTCAGCAACCCTACTGGCAATTGGCTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YIF1

Protein Analysis

296

Amino Acids

33.17

Weight (kDa)

9.1

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017243)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17570
malus_domestica MD10G1149100.v1.1
prunus_persica Prupe.8G187900_v2.0.a1
pyrus_communis pycom10g12870
rosa_chinensis RchiOBHm_Chr6g0282511
rosa_multiflora Rmu_sc0000283.1_g000013 Rmu_sc0005697.1_g000030
rosa_roxburghii Rroxscaffold_7G00186300
rosa_rugosa Rorug06G0147000
rosa_samantha Rh6AG260400 Rh6CG262600 Rh6DG254500
rosa_wichuraiana Rw6G022510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 607
AccB7I CCANNNNNTGG 1 cut(s) 522
AciI CCGC 1 cut(s) 600
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 2 cut(s) 213, 500
AcuI CTGAAG 2 cut(s) 62, 338
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 3 cut(s) 120, 380, 522
AgsI TTSAA 2 cut(s) 143, 560
AjnI CCWGG 2 cut(s) 118, 741
AluBI AGCT 4 cut(s) 167, 171, 690, 778
AluI AGCT 4 cut(s) 167, 171, 690, 778
Alw21I GWGCWC 2 cut(s) 731, 780
AlwI GGATC 1 cut(s) 263
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 2 cut(s) 553, 568
ApoI RAATTY 2 cut(s) 213, 500
AsuC2I CCSGG 1 cut(s) 509
AsuNHI GCTAGC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 607
BanII GRGCYC 1 cut(s) 780
BbsI GAAGAC 1 cut(s) 579
Bbv12I GWGCWC 2 cut(s) 731, 780
BbvI GCAGC 2 cut(s) 540, 555
BccI CCATC 1 cut(s) 142
BciT130I CCWGG 2 cut(s) 120, 743
BcnI CCSGG 1 cut(s) 509
BfaI CTAG 4 cut(s) 92, 168, 485, 671
BisI GCNGC 2 cut(s) 554, 569
BlpI GCTNAGC 2 cut(s) 774, 857
BlsI GCNGC 2 cut(s) 555, 570
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 120, 509, 743
BmiI GGNNCC 2 cut(s) 372, 609
BmrFI CCNGG 3 cut(s) 120, 509, 743
BmsI GCATC 6 cut(s) 486, 555, 587, 744, 781, 811
BmtI GCTAGC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 579
BpmI CTGGAG 1 cut(s) 408
Bpu10I CCTNAGC 1 cut(s) 730
Bpu1102I GCTNAGC 2 cut(s) 774, 857
BpuMI CCSGG 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 119, 184
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 380, 522
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 4 cut(s) 100, 374, 640, 874
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 2 cut(s) 120, 743
BseDI CCNNGG 2 cut(s) 119, 184
BseGI GGATG 4 cut(s) 88, 180, 546, 719
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 120, 380, 522
BseMII CTCAG 6 cut(s) 186, 245, 279, 744, 765, 871
BseNI ACTGG 4 cut(s) 100, 374, 640, 874
BseRI GAGGAG 1 cut(s) 376
BseXI GCAGC 2 cut(s) 540, 555
BseYI CCCAGC 1 cut(s) 592
BsgI GTGCAG 1 cut(s) 326
BshFI GGCC 1 cut(s) 489
BshNI GGYRCC 1 cut(s) 607
BsiHKAI GWGCWC 2 cut(s) 731, 780
BsiSI CCGG 2 cut(s) 65, 509
BslI CCNNNNNNNGG 3 cut(s) 120, 380, 522
BsnI GGCC 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 731, 780
Bsp143I GATC 1 cut(s) 268
Bsp1720I GCTNAGC 2 cut(s) 774, 857
BspACI CCGC 1 cut(s) 600
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 6 cut(s) 185, 244, 278, 743, 766, 870
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 372, 609
BspOI GCTAGC 1 cut(s) 171
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 4 cut(s) 100, 374, 640, 874
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 119, 184
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 120, 743
Bst4CI ACNGT 1 cut(s) 837
BstAPI GCANNNNNTGC 1 cut(s) 252
BstC8I GCNNGC 5 cut(s) 66, 169, 386, 475, 551
BstDEI CTNAG 6 cut(s) 172, 231, 265, 730, 774, 857
BstF5I GGATG 4 cut(s) 88, 180, 546, 719
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 252, 349
BstNI CCWGG 2 cut(s) 120, 743
BstNSI RCATGY 2 cut(s) 422, 802
BstSCI CCNGG 3 cut(s) 118, 507, 741
BstV1I GCAGC 2 cut(s) 540, 555
BstV2I GAAGAC 1 cut(s) 579
BstX2I RGATCY 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 24
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 1 cut(s) 489
BtsCI GGATG 4 cut(s) 88, 180, 546, 719
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 5 cut(s) 66, 169, 386, 475, 551
CciI TCATGA 1 cut(s) 444
Cfr10I RCCGGY 1 cut(s) 64
Csp6I GTAC 1 cut(s) 259
CviAII CATG 6 cut(s) 79, 419, 445, 622, 724, 799
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 6 cut(s) 172, 231, 265, 730, 774, 857
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EciI GGCGGA 1 cut(s) 615
Ecl136II GAGCTC 1 cut(s) 778
Eco147I AGGCCT 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 780
Eco53kI GAGCTC 1 cut(s) 778
Eco57I CTGAAG 2 cut(s) 62, 338
EcoICRI GAGCTC 1 cut(s) 778
EcoRII CCWGG 2 cut(s) 118, 741
EcoT22I ATGCAT 2 cut(s) 697, 804
EcoT38I GRGCYC 1 cut(s) 780
FaeI CATG 6 cut(s) 82, 422, 448, 625, 727, 802
FatI CATG 6 cut(s) 78, 418, 444, 621, 723, 798
FauNDI CATATG 2 cut(s) 202, 713
Fnu4HI GCNGC 2 cut(s) 554, 569
FokI GGATG 4 cut(s) 95, 167, 553, 706
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 2 cut(s) 554, 569
FspBI CTAG 4 cut(s) 92, 168, 485, 671
GluI GCNGC 2 cut(s) 554, 569
GsaI CCCAGC 1 cut(s) 596
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 1 cut(s) 489
HapII CCGG 2 cut(s) 65, 509
Hin1II CATG 6 cut(s) 82, 422, 448, 625, 727, 802
HinfI GANTC 4 cut(s) 88, 96, 127, 678
HpaII CCGG 2 cut(s) 65, 509
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 4 cut(s) 11, 175, 185, 268
Hpy188III TCNNGA 7 cut(s) 105, 114, 307, 425, 445, 757, 885
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 529
HpyCH4III ACNGT 1 cut(s) 837
HpyCH4V TGCA 8 cut(s) 200, 241, 255, 343, 455, 695, 794, 802
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 349
HpyF3I CTNAG 6 cut(s) 172, 231, 265, 730, 774, 857
Hsp92II CATG 6 cut(s) 82, 422, 448, 625, 727, 802
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 3 cut(s) 370, 427, 783
Lsp1109I GCAGC 2 cut(s) 540, 555
LweI GCATC 6 cut(s) 486, 555, 587, 744, 781, 811
MaeI CTAG 4 cut(s) 92, 168, 485, 671
MaeIII GTNAC 2 cut(s) 45, 638
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 3 cut(s) 331, 579, 730
MfeI CAATTG 1 cut(s) 874
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 2 cut(s) 731, 780
MluCI AATT 6 cut(s) 143, 213, 324, 500, 520, 874
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 8 cut(s) 179, 282, 341, 354, 374, 411, 500, 598
Mph1103I ATGCAT 2 cut(s) 697, 804
MroNI GCCGGC 1 cut(s) 64
MslI CAYNNNNRTG 2 cut(s) 724, 786
MspI CCGG 2 cut(s) 65, 509
MspR9I CCNGG 3 cut(s) 120, 509, 743
MunI CAATTG 1 cut(s) 874
MvaI CCWGG 2 cut(s) 120, 743
MwoI GCNNNNNNNGC 2 cut(s) 252, 349
NaeI GCCGGC 1 cut(s) 66
NciI CCSGG 1 cut(s) 509
NdeI CATATG 2 cut(s) 202, 713
NdeII GATC 1 cut(s) 268
NgoMIV GCCGGC 1 cut(s) 64
NheI GCTAGC 1 cut(s) 167
NlaIII CATG 6 cut(s) 82, 422, 448, 625, 727, 802
NlaIV GGNNCC 2 cut(s) 372, 609
NsiI ATGCAT 2 cut(s) 697, 804
NspI RCATGY 2 cut(s) 422, 802
PagI TCATGA 1 cut(s) 444
PceI AGGCCT 1 cut(s) 489
PdiI GCCGGC 1 cut(s) 66
PfeI GAWTC 4 cut(s) 88, 96, 127, 678
PflMI CCANNNNNTGG 1 cut(s) 522
PkrI GCNGC 2 cut(s) 555, 570
PsiI TTATAA 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 780
Psp6I CCWGG 2 cut(s) 118, 741
PspFI CCCAGC 1 cut(s) 592
PspGI CCWGG 2 cut(s) 118, 741
PspN4I GGNNCC 2 cut(s) 372, 609
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 2 cut(s) 724, 786
SacI GAGCTC 1 cut(s) 780
SatI GCNGC 2 cut(s) 554, 569
Sau3AI GATC 1 cut(s) 268
ScaI AGTACT 1 cut(s) 260
ScrFI CCNGG 3 cut(s) 120, 509, 743
SduI GDGCHC 2 cut(s) 731, 780
SetI ASST 7 cut(s) 169, 173, 190, 403, 613, 692, 780
SfaNI GCATC 6 cut(s) 486, 555, 587, 744, 781, 811
SmiMI CAYNNNNRTG 2 cut(s) 724, 786
Sse9I AATT 6 cut(s) 143, 213, 324, 500, 520, 874
SseBI AGGCCT 1 cut(s) 489
SsiI CCGC 1 cut(s) 600
SspMI CTAG 4 cut(s) 92, 168, 485, 671
SstI GAGCTC 1 cut(s) 780
StuI AGGCCT 1 cut(s) 489
StyD4I CCNGG 3 cut(s) 118, 507, 741
TaaI ACNGT 1 cut(s) 837
TaqI TCGA 1 cut(s) 71
TasI AATT 6 cut(s) 143, 213, 324, 500, 520, 874
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 4 cut(s) 88, 96, 127, 678
TscAI CASTG 1 cut(s) 415
TseI GCWGC 2 cut(s) 553, 568
TspDTI ATGAA 1 cut(s) 433
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 1 cut(s) 415
Van91I CCANNNNNTGG 1 cut(s) 522
XapI RAATTY 2 cut(s) 213, 500
XceI RCATGY 2 cut(s) 422, 802
XspI CTAG 4 cut(s) 92, 168, 485, 671
ZrmI AGTACT 1 cut(s) 260
Zsp2I ATGCAT 2 cut(s) 697, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.