Rw6G022510

YIF1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0017243
Physical Location & Seq
Forward (+)
44510194 .. 44512914
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G022510.1

Sequence Viewer

Length: 831 bp
ATGCCCAGTTCTTCTCTCTCTACGGATGAGAATCTAGGATTCCAGTCTGGAGTTCCCATACCGGGACTGAATCCTCCATCAAATCAGTTTGGGAATGCATTTTGTGGAGCTGGGTCGGGACTCATTCGAGAGGGATTGGGTGCTTATGGGAAGAGAATTTGTGGATCGAGTTCACAGTATGTGCAAAGCAATATAATTAAGTGCTTCTCGGATCCTCAATACTACTTCCAAGTGAATGCGCACTATGTCAGGAACAAACTGAAGATAATTCTATTTCCATTTCTTCACAGGGGACACTGGACCAGGATAACAGAGCCAATTGGAGGCAGGCTTTCCTATAATCCTCCAATTAATGACATAAATGCTCCAGATTTATACATTCCATTCATGACATTTGCGACATACTTAGTTCTTGCTGGCATCTCTCTCGGCCTTTCTGGGAAATTTAGTCCAGAAGCCTTAAATTGGCAGTTTGTGAAAGGAATGGCAAGCTGGTTATTCCAAGCAATGTTGTTGAAGGCATCATTGACTTCGCTAGGCGGTGGAGAGGCACCATTGTTGGACATGATAGCATATGCTGGGTATACATTCACGGGGCTGTGTGTGGCTGTTGTAGGGAGAATTACATTAAGCTATGCGTACTACTTGATAGTCATATGGACATCCATGTGCTCAGGCATCTTCTTGGCTAAGACGATTAAGCTAACTTTGTATGCCGAGGCTAGGAGTTACGATGTCACCATCCACAACTATCTCTTGCTAGGTATTGCATTTTCTCCATTCCCATTCATCTTCTGCCTGAGCAACCCTACCGGGAATTGGATTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YIF1

Protein Analysis

276

Amino Acids

30.26

Weight (kDa)

8.83

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YIF1 PF03878 48 - 245 1.6e-50 YIF1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017243)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17570
malus_domestica MD10G1149100.v1.1
prunus_persica Prupe.8G187900_v2.0.a1
pyrus_communis pycom10g12870
rosa_chinensis RchiOBHm_Chr6g0282511
rosa_multiflora Rmu_sc0000283.1_g000013 Rmu_sc0005697.1_g000030
rosa_roxburghii Rroxscaffold_7G00186300
rosa_rugosa Rorug06G0147000
rosa_samantha Rh6AG260400 Rh6CG262600 Rh6DG254500
rosa_wichuraiana Rw6G022510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 550
AccI GTMKAC 1 cut(s) 584
AciI CCGC 1 cut(s) 540
AclWI GGATC 3 cut(s) 172, 206, 219
AcsI RAATTY 2 cut(s) 156, 443
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 1 cut(s) 641
AfiI CCNNNNNNNGG 5 cut(s) 62, 323, 465, 723, 819
AgsI TTSAA 1 cut(s) 517
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 4 cut(s) 110, 492, 633, 703
AluI AGCT 4 cut(s) 110, 492, 633, 703
Alw21I GWGCWC 1 cut(s) 674
AlwI GGATC 3 cut(s) 172, 206, 219
AoxI GGCC 1 cut(s) 430
ApoI RAATTY 2 cut(s) 156, 443
AseI ATTAAT 1 cut(s) 351
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 300
AsuC2I CCSGG 2 cut(s) 63, 814
AsuHPI GGTGA 1 cut(s) 730
AvaII GGWCC 1 cut(s) 300
BamHI GGATCC 1 cut(s) 211
BanI GGYRCC 1 cut(s) 550
Bbv12I GWGCWC 1 cut(s) 674
BccI CCATC 2 cut(s) 85, 749
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 1 cut(s) 304
BcnI CCSGG 2 cut(s) 63, 814
BfaI CTAG 4 cut(s) 35, 536, 723, 761
Bme1390I CCNGG 3 cut(s) 63, 304, 814
Bme18I GGWCC 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 300
BmiI GGNNCC 2 cut(s) 213, 552
BmrFI CCNGG 3 cut(s) 63, 304, 814
BmsI GCATC 3 cut(s) 429, 530, 687
BpmI CTGGAG 2 cut(s) 69, 351
Bpu10I CCTNAGC 2 cut(s) 673, 800
BpuMI CCSGG 2 cut(s) 63, 814
BsaBI GATNNNNATC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 717
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 323, 465, 723, 819
Bse1I ACTGG 3 cut(s) 6, 43, 302
Bse3DI GCAATG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 3 cut(s) 31, 662, 741
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 5 cut(s) 62, 323, 465, 723, 819
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 2 cut(s) 687, 791
BseNI ACTGG 3 cut(s) 6, 43, 302
BseYI CCCAGC 2 cut(s) 110, 578
BshFI GGCC 1 cut(s) 432
BshNI GGYRCC 1 cut(s) 550
BsiHKAI GWGCWC 1 cut(s) 674
BsiSI CCGG 2 cut(s) 62, 813
BslFI GGGAC 3 cut(s) 78, 132, 306
BslI CCNNNNNNNGG 5 cut(s) 62, 323, 465, 723, 819
BsmFI GGGAC 3 cut(s) 78, 132, 306
BsmI GAATGC 2 cut(s) 100, 241
BsnI GGCC 1 cut(s) 432
Bsp1286I GDGCHC 1 cut(s) 674
Bsp143I GATC 2 cut(s) 164, 211
BspACI CCGC 1 cut(s) 540
BspANI GGCC 1 cut(s) 432
BspCNI CTCAG 2 cut(s) 686, 792
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 213, 552
BspPI GGATC 3 cut(s) 172, 206, 219
BspT107I GGYRCC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 3 cut(s) 6, 43, 302
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 2 cut(s) 164, 211
BssNAI GTATAC 1 cut(s) 585
Bst1107I GTATAC 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 3 cut(s) 329, 418, 490
BstDEI CTNAG 4 cut(s) 406, 673, 690, 800
BstF5I GGATG 3 cut(s) 31, 662, 741
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 2 cut(s) 167, 214
BstMBI GATC 2 cut(s) 164, 211
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 3 cut(s) 61, 302, 812
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BstZ17I GTATAC 1 cut(s) 585
BsuRI GGCC 1 cut(s) 432
BtsCI GGATG 3 cut(s) 31, 662, 741
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 3 cut(s) 329, 418, 490
CciI TCATGA 1 cut(s) 387
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 300
Csp6I GTAC 1 cut(s) 640
CviAII CATG 3 cut(s) 388, 565, 667
CviQI GTAC 1 cut(s) 640
DdeI CTNAG 4 cut(s) 406, 673, 690, 800
DpnI GATC 2 cut(s) 166, 213
DpnII GATC 2 cut(s) 164, 211
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 302
EcoT22I ATGCAT 1 cut(s) 100
FaeI CATG 3 cut(s) 391, 568, 670
FaqI GGGAC 3 cut(s) 78, 132, 306
FatI CATG 3 cut(s) 387, 564, 666
FauNDI CATATG 2 cut(s) 574, 656
FblI GTMKAC 1 cut(s) 584
FokI GGATG 3 cut(s) 38, 649, 728
FspAI RTGCGCAY 1 cut(s) 240
FspBI CTAG 4 cut(s) 35, 536, 723, 761
FspI TGCGCA 1 cut(s) 240
GlaI GCGC 1 cut(s) 240
GsaI CCCAGC 2 cut(s) 114, 582
GsuI CTGGAG 2 cut(s) 69, 351
HaeIII GGCC 1 cut(s) 432
HapII CCGG 2 cut(s) 62, 813
HhaI GCGC 1 cut(s) 241
Hin1II CATG 3 cut(s) 391, 568, 670
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HinfI GANTC 4 cut(s) 31, 39, 70, 120
HpaII CCGG 2 cut(s) 62, 813
HphI GGTGA 1 cut(s) 730
Hpy166II GTNNAC 2 cut(s) 173, 585
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 8 cut(s) 48, 117, 128, 250, 368, 388, 452, 828
Hpy8I GTNNAC 2 cut(s) 173, 585
HpyAV CCTTC 1 cut(s) 511
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4V TGCA 3 cut(s) 98, 184, 770
HpyF3I CTNAG 4 cut(s) 406, 673, 690, 800
Hsp92II CATG 3 cut(s) 391, 568, 670
HspAI GCGC 1 cut(s) 239
Kzo9I GATC 2 cut(s) 164, 211
LmnI GCTCC 2 cut(s) 107, 370
LweI GCATC 3 cut(s) 429, 530, 687
MaeI CTAG 4 cut(s) 35, 536, 723, 761
MaeIII GTNAC 2 cut(s) 728, 736
MalI GATC 2 cut(s) 166, 213
MboI GATC 2 cut(s) 164, 211
MboII GAAGA 6 cut(s) 3, 163, 274, 275, 673, 784
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 674
MluCI AATT 9 cut(s) 156, 195, 267, 318, 348, 443, 463, 621, 817
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 7 cut(s) 84, 124, 225, 317, 354, 541, 712
Mph1103I ATGCAT 1 cut(s) 100
MseI TTAA 5 cut(s) 198, 351, 461, 629, 699
MslI CAYNNNNRTG 1 cut(s) 667
MspI CCGG 2 cut(s) 62, 813
MspR9I CCNGG 3 cut(s) 63, 304, 814
MunI CAATTG 1 cut(s) 318
Mva1269I GAATGC 2 cut(s) 100, 241
MvaI CCWGG 1 cut(s) 304
NciI CCSGG 2 cut(s) 63, 814
NdeI CATATG 2 cut(s) 574, 656
NdeII GATC 2 cut(s) 164, 211
NlaIII CATG 3 cut(s) 391, 568, 670
NlaIV GGNNCC 2 cut(s) 213, 552
NmeAIII GCCGAG 2 cut(s) 408, 742
NmuCI GTSAC 1 cut(s) 736
NsbI TGCGCA 1 cut(s) 240
NsiI ATGCAT 1 cut(s) 100
PagI TCATGA 1 cut(s) 387
PctI GAATGC 2 cut(s) 100, 241
PfeI GAWTC 3 cut(s) 31, 39, 70
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
PshBI ATTAAT 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 302
PspFI CCCAGC 2 cut(s) 110, 578
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 2 cut(s) 213, 552
PspPI GGNCC 1 cut(s) 300
PsuI RGATCY 1 cut(s) 211
RsaI GTAC 1 cut(s) 641
RsaNI GTAC 1 cut(s) 640
RseI CAYNNNNRTG 1 cut(s) 667
SaqAI TTAA 5 cut(s) 198, 351, 461, 629, 699
Sau3AI GATC 2 cut(s) 164, 211
Sau96I GGNCC 1 cut(s) 300
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 3 cut(s) 63, 304, 814
SduI GDGCHC 1 cut(s) 674
SetI ASST 5 cut(s) 112, 494, 635, 705, 766
SfaNI GCATC 3 cut(s) 429, 530, 687
SinI GGWCC 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 667
Sse9I AATT 9 cut(s) 156, 195, 267, 318, 348, 443, 463, 621, 817
SsiI CCGC 1 cut(s) 540
SspMI CTAG 4 cut(s) 35, 536, 723, 761
StyD4I CCNGG 3 cut(s) 61, 302, 812
TaaI ACNGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 127, 167
TasI AATT 9 cut(s) 156, 195, 267, 318, 348, 443, 463, 621, 817
TfiI GAWTC 3 cut(s) 31, 39, 70
Tru1I TTAA 5 cut(s) 198, 351, 461, 629, 699
Tru9I TTAA 5 cut(s) 198, 351, 461, 629, 699
TscAI CASTG 1 cut(s) 302
TseFI GTSAC 1 cut(s) 736
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 2 cut(s) 376, 778
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 300
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 2 cut(s) 156, 443
XmiI GTMKAC 1 cut(s) 584
XspI CTAG 4 cut(s) 35, 536, 723, 761
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.