Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008838

Physical Location & Seq

Genomic Coordinates Forward (+)

15626246 .. 15626722

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTTTGTTCCTTCTTAAACTCATCTTCTTCGTAGTGAGCCTTGTAGCGAATTTGGTTTCGCGGTTGATCTTCTCTACCATTGCTCATCTTCTAGTGTTACTGATTCATGGATGTAAACTTCCAGGCCAAGCCATCCATGGTGGATTAGGACAAGTCTCAGAGGCCATCAAGTCATGTTTGGAGTACTTTCTTGGGCTTATCATGGAAGTAATCAGTGCTCTAATCTCTACTTTCTTTGATTATCTGATAGAAAGTGTTACAGGCTCTGCTGCAGCTGCCACATCTACAGTTTGGGATCTCTTGGAAAAAACAAAGACTTCACTTGATGCGCTCAAAAGTTTCCAGGAGGCTTTTGAGGGACTACCAGAGATGACTTTTGACATAGTGAAGGATTTGTGGAACAATTACAAGGATGCTTTAGGATATGTTGTAGAAAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.22

Weight (kDa)

4.88

Isoelectric Point (pI)

26.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18250 FvH4_2g18301
malus_domestica	MD05G1166900.v1.1 MD10G1156800.v1.1
prunus_persica	Prupe.8G195200_v2.0.a1 Prupe.8G195400_v2.0.a1
pyrus_communis	pycom10g13500
rosa_chinensis	RchiOBHm_Chr6g0283621 RchiOBHm_Chr6g0283651
rosa_laevigata	RLG00000012808 RLG00000012812
rosa_multiflora	Rmu_sc0002906.1_g000012 Rmu_sc0005719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00185340
rosa_rugosa	Rorug06G0156200
rosa_samantha	Rh6AG268000 Rh6AG268300 Rh6BG270500 Rh6BG270800 Rh6CG270300 Rh6CG270700 Rh6DG264000 Rh6DG264300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	64
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	124, 345
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	306
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	127, 165
ApeKI	GCWGC	3 cut(s)	272, 275, 278
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	3 cut(s)	259, 265, 287
BccI	CCATC	2 cut(s)	143, 176
BciT130I	CCWGG	2 cut(s)	126, 347
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	2 cut(s)	273, 288
BisI	GCNGC	3 cut(s)	273, 276, 279
BlsI	GCNGC	3 cut(s)	274, 277, 280
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	126, 347
BmrFI	CCNGG	2 cut(s)	126, 347
BmsI	GCATC	2 cut(s)	319, 406
BsaJI	CCNNGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	126, 347
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	3 cut(s)	119, 135, 421
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	174
BseXI	GCAGC	3 cut(s)	259, 265, 287
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	129, 167
BsiHKAI	GWGCWC	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	375
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	129, 167
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	69, 298
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	2 cut(s)	129, 167
BspCNI	CTCAG	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	2 cut(s)	69, 298
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	126, 347
Bst4CI	ACNGT	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	160
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	3 cut(s)	119, 135, 421
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	2 cut(s)	72, 301
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	69, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	2 cut(s)	126, 347
BstSCI	CCNGG	2 cut(s)	124, 345
BstSFI	CTRYAG	2 cut(s)	273, 288
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	3 cut(s)	259, 265, 287
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	129, 167
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	3 cut(s)	119, 135, 421
BtsIMutI	CAGTG	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	110, 140, 177, 205
CviJI	RGCY	9 cut(s)	5, 42, 129, 134, 167, 199, 267, 278, 353
CviKI_1	RGCY	9 cut(s)	5, 42, 129, 134, 167, 199, 267, 278, 353
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	2 cut(s)	71, 300
DpnII	GATC	2 cut(s)	69, 298
Eco130I	CCWWGG	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	124, 345
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	4 cut(s)	113, 143, 180, 208
FaiI	YATR	6 cut(s)	111, 141, 178, 206, 386, 429
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	4 cut(s)	109, 139, 176, 204
Fnu4HI	GCNGC	3 cut(s)	273, 276, 279
FokI	GGATG	3 cut(s)	122, 126, 428
Fsp4HI	GCNGC	3 cut(s)	273, 276, 279
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	3 cut(s)	273, 276, 279
HaeIII	GGCC	2 cut(s)	129, 167
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	4 cut(s)	113, 143, 180, 208
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	163, 249
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	23, 385
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	113, 143, 180, 208
HspAI	GCGC	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	69, 298
LpnPI	CCDG	6 cut(s)	111, 138, 249, 332, 359, 381
Lsp1109I	GCAGC	3 cut(s)	259, 265, 287
LweI	GCATC	2 cut(s)	319, 406
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	99, 259
MalI	GATC	2 cut(s)	71, 300
MboI	GATC	2 cut(s)	69, 298
MboII	GAAGA	4 cut(s)	19, 22, 64, 83
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	2 cut(s)	52, 406
MnlI	CCTC	3 cut(s)	157, 343, 352
MseI	TTAA	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	126, 347
MvaI	CCWGG	2 cut(s)	126, 347
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	2 cut(s)	69, 298
NlaIII	CATG	4 cut(s)	113, 143, 180, 208
PfeI	GAWTC	1 cut(s)	106
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	274, 277, 280
Psp6I	CCWGG	2 cut(s)	124, 345
PspGI	CCWGG	2 cut(s)	124, 345
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	3 cut(s)	273, 276, 279
Sau3AI	GATC	2 cut(s)	69, 298
ScaI	AGTACT	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	126, 347
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	1 cut(s)	280
SfaNI	GCATC	2 cut(s)	319, 406
SfcI	CTRYAG	2 cut(s)	273, 288
Sse9I	AATT	2 cut(s)	52, 406
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	124, 345
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	292
TasI	AATT	2 cut(s)	52, 406
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	3 cut(s)	272, 275, 278
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XspI	CTAG	1 cut(s)	95
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.