Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008838

Physical Location & Seq

Genomic Coordinates Reverse (-)

22590729 .. 22591175

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012812

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTTTGTTCCTTCTCAAACTCATCTTCTTCGCAGTGAGTCTCGTATCGAATTTGGTTTCGCGGTTGATATTCTCTACCATTGCTCACCTTCTAGTGTTATTGATTCATGGATTCAAACTTCCAGGTCAAGCCATCCATGGTGGATTAGGACTAGTGTCAGAGGCCATCAAGTCATGTTTGGAGTACTTTCTTGGGCTTATCATGGAAGCAATCAGTGCTCTAATATCTACTTTCTTTGATTATCTGATAGAAAGTGTTACAGGGTCTGCTGCAGTTACCACATCTACAATTTGGGATCTCTTGGAAAAAACAAAGACTTCACTTGATGCGCTCAAAAGTTTCCAGGAGGCTTTCGAGGGACTACCGGAGATGATTTTTAACATTGTGATGGATTTGTGGAACAATTACAATGATGCTTTAGGATATGTTGTAGAAAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.28

Weight (kDa)

4.71

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18250 FvH4_2g18301
malus_domestica	MD05G1166900.v1.1 MD10G1156800.v1.1
prunus_persica	Prupe.8G195200_v2.0.a1 Prupe.8G195400_v2.0.a1
pyrus_communis	pycom10g13500
rosa_chinensis	RchiOBHm_Chr6g0283621 RchiOBHm_Chr6g0283651
rosa_laevigata	RLG00000012808 RLG00000012812
rosa_multiflora	Rmu_sc0002906.1_g000012 Rmu_sc0005719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00185340
rosa_rugosa	Rorug06G0156200
rosa_samantha	Rh6AG268000 Rh6AG268300 Rh6BG270500 Rh6BG270800 Rh6CG270300 Rh6CG270700 Rh6DG264000 Rh6DG264300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	64
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	118
AhlI	ACTAGT	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	124, 345
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	306
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	3 cut(s)	143, 176, 385
BciT130I	CCWGG	2 cut(s)	126, 347
BcoDI	GTCTC	1 cut(s)	47
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	2 cut(s)	95, 155
BfmI	CTRYAG	1 cut(s)	273
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	126, 347
BmrFI	CCNGG	2 cut(s)	126, 347
BmsI	GCATC	2 cut(s)	319, 406
BoxI	GACNNNNGTC	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	126, 347
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	375
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	126, 347
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	2 cut(s)	126, 347
BstPAI	GACNNNNGTC	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	124, 345
BstSFI	CTRYAG	1 cut(s)	273
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 223
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	110, 140, 177, 205
CviJI	RGCY	5 cut(s)	5, 134, 167, 199, 353
CviKI_1	RGCY	5 cut(s)	5, 134, 167, 199, 353
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	124, 345
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	4 cut(s)	113, 143, 180, 208
FaiI	YATR	5 cut(s)	111, 141, 178, 206, 429
FaqI	GGGAC	1 cut(s)	375
FatI	CATG	4 cut(s)	109, 139, 176, 204
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	95, 155
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	368
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	4 cut(s)	113, 143, 180, 208
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	3 cut(s)	40, 106, 114
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	1 cut(s)	80
Hpy188I	TCNGA	2 cut(s)	163, 249
HpyAV	CCTTC	2 cut(s)	23, 101
HpyCH4V	TGCA	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
Hsp92II	CATG	4 cut(s)	113, 143, 180, 208
HspAI	GCGC	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	111, 138, 249, 332, 359, 381
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	2 cut(s)	319, 406
MaeI	CTAG	2 cut(s)	95, 155
MaeIII	GTNAC	2 cut(s)	259, 277
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	2 cut(s)	19, 22
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	3 cut(s)	52, 291, 406
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	3 cut(s)	157, 343, 352
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	389
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	126, 347
MvaI	CCWGG	2 cut(s)	126, 347
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	4 cut(s)	113, 143, 180, 208
PfeI	GAWTC	2 cut(s)	106, 114
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PshAI	GACNNNNGTC	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	124, 345
PspGI	CCWGG	2 cut(s)	124, 345
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	298
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	298
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	126, 347
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	2 cut(s)	93, 130
SfaNI	GCATC	2 cut(s)	319, 406
SfcI	CTRYAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	389
SpeI	ACTAGT	1 cut(s)	154
Sse9I	AATT	3 cut(s)	52, 291, 406
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	2 cut(s)	95, 155
StyD4I	CCNGG	2 cut(s)	124, 345
StyI	CCWWGG	1 cut(s)	139
TaqI	TCGA	2 cut(s)	50, 357
TasI	AATT	3 cut(s)	52, 291, 406
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	2 cut(s)	106, 114
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	2 cut(s)	42, 223
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	42, 223
XapI	RAATTY	1 cut(s)	52
XspI	CTAG	2 cut(s)	95, 155
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.