Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008838

Physical Location & Seq

Genomic Coordinates Forward (+)

24547591 .. 24549341

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1156800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGGATTAAGAAGTTTCGCAAGAAACTTTGCGTTGAGGTTTACAGACAGATCAGACTCATGGAGAAAAATTACTGCAGTTCCTCCTGTTTCACAAGATGTCAGTTTGTTGCAAAACAGGGGTGCATTCTTGAGTGGAGTTGTGTATTGGATTGCAAACGGGAGTTCTGGGAGTGTCATACCAACTCAAGGATGCTGGAATCAAGATGCATCGTTCTGACCTTCCTTATGTCGATGCTTATAGGATTAAAAGCACCAGGCCAAGGCGTCCATGGCATGTTACAACTAGTCACAGAGGTCATCAGGTCATGTTCCGAGTACTTTGTGGGACTTGTAATGGAAGCAATAAGTGCTATAATCTCCACTTTCTTTGATTTTTTAAAGGGAAGTGTAAAAGGTTCTGCTGGCGTTACAACTTCTGCAGTTGTAGATCTTGTGGAGAAAACAAAGACTACGCTTGAATCGCTCGATGGGTTGCTCACTGATTATCCGGAGATTTCCGAAGGGTTTTTCGAGATGGTTTATAGTATTGTGAATGATATGTGGAATAATTACAAGGATGCGTTTGGATATGTTACGGAGAACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

22.32

Weight (kDa)

6.72

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18250 FvH4_2g18301
malus_domestica	MD05G1166900.v1.1 MD10G1156800.v1.1
prunus_persica	Prupe.8G195200_v2.0.a1 Prupe.8G195400_v2.0.a1
pyrus_communis	pycom10g13500
rosa_chinensis	RchiOBHm_Chr6g0283621 RchiOBHm_Chr6g0283651
rosa_laevigata	RLG00000012808 RLG00000012812
rosa_multiflora	Rmu_sc0002906.1_g000012 Rmu_sc0005719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00185340
rosa_rugosa	Rorug06G0156200
rosa_samantha	Rh6AG268000 Rh6AG268300 Rh6BG270500 Rh6BG270800 Rh6CG270300 Rh6CG270700 Rh6DG264000 Rh6DG264300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	490
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	189, 263
AgsI	TTSAA	1 cut(s)	461
AhlI	ACTAGT	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	256
Aor13HI	TCCGGA	1 cut(s)	490
AoxI	GGCC	1 cut(s)	259
BccI	CCATC	2 cut(s)	464, 511
BciT130I	CCWGG	1 cut(s)	258
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	2 cut(s)	76, 420
BglII	AGATCT	1 cut(s)	430
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	5 cut(s)	183, 197, 219, 225, 550
BpuEI	CTTGAG	2 cut(s)	152, 172
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	262, 271
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 263
BseAI	TCCGGA	1 cut(s)	490
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	262, 271
BseGI	GGATG	2 cut(s)	198, 565
BseLI	CCNNNNNNNGG	2 cut(s)	189, 263
BshFI	GGCC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	491
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	189, 263
BsmFI	GGGAC	1 cut(s)	342
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	261
Bsp13I	TCCGGA	1 cut(s)	490
Bsp143I	GATC	2 cut(s)	51, 430
Bsp19I	CCATGG	1 cut(s)	271
BspANI	GGCC	1 cut(s)	261
BspEI	TCCGGA	1 cut(s)	490
BspMAI	CTGCAG	2 cut(s)	80, 424
BssECI	CCNNGG	2 cut(s)	262, 271
BssMI	GATC	2 cut(s)	51, 430
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	262, 271
Bst2UI	CCWGG	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	198, 565
BstKTI	GATC	2 cut(s)	54, 433
BstMBI	GATC	2 cut(s)	51, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 350, 463
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	2 cut(s)	76, 420
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	198, 565
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	406
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	319
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	4 cut(s)	61, 272, 277, 309
CviJI	RGCY	1 cut(s)	261
CviKI_1	RGCY	1 cut(s)	261
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	2 cut(s)	53, 432
DpnII	GATC	2 cut(s)	51, 430
DraI	TTTAAA	1 cut(s)	381
Eco130I	CCWWGG	2 cut(s)	262, 271
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	262, 271
EcoT22I	ATGCAT	1 cut(s)	212
ErhI	CCWWGG	2 cut(s)	262, 271
FaeI	CATG	4 cut(s)	64, 275, 280, 312
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	4 cut(s)	60, 271, 276, 308
FokI	GGATG	2 cut(s)	205, 572
FspBI	CTAG	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	491
HgaI	GACGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	4 cut(s)	64, 275, 280, 312
HinfI	GANTC	3 cut(s)	57, 200, 461
HpaII	CCGG	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	4 cut(s)	56, 219, 316, 502
Hpy188III	TCNNGA	4 cut(s)	131, 204, 491, 514
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	232, 497
HpyCH4V	TGCA	6 cut(s)	78, 113, 126, 156, 210, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 350, 463
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	64, 275, 280, 312
Kpn2I	TCCGGA	1 cut(s)	490
Kzo9I	GATC	2 cut(s)	51, 430
LpnPI	CCDG	9 cut(s)	100, 104, 154, 182, 243, 270, 289, 390, 504
LweI	GCATC	5 cut(s)	183, 197, 219, 225, 550
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	4 cut(s)	279, 289, 409, 574
MalI	GATC	2 cut(s)	53, 432
MboI	GATC	2 cut(s)	51, 430
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	2 cut(s)	70, 550
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	3 cut(s)	31, 94, 289
Mph1103I	ATGCAT	1 cut(s)	212
MroI	TCCGGA	1 cut(s)	490
MseI	TTAA	3 cut(s)	9, 248, 380
MspI	CCGG	1 cut(s)	491
MspR9I	CCNGG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	3 cut(s)	273, 350, 463
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	2 cut(s)	51, 430
NlaIII	CATG	4 cut(s)	64, 275, 280, 312
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	212
NspI	RCATGY	1 cut(s)	280
PctI	GAATGC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	200, 461
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PstI	CTGCAG	2 cut(s)	80, 424
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SaqAI	TTAA	3 cut(s)	9, 248, 380
Sau3AI	GATC	2 cut(s)	51, 430
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	5 cut(s)	42, 224, 300, 308, 400
SfaNI	GCATC	5 cut(s)	183, 197, 219, 225, 550
SfcI	CTRYAG	2 cut(s)	76, 420
SmlI	CTYRAG	2 cut(s)	131, 187
SmoI	CTYRAG	2 cut(s)	131, 187
SpeI	ACTAGT	1 cut(s)	286
Sse9I	AATT	2 cut(s)	70, 550
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	2 cut(s)	262, 271
TaqI	TCGA	3 cut(s)	233, 468, 513
TasI	AATT	2 cut(s)	70, 550
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	200, 461
Tru1I	TTAA	3 cut(s)	9, 248, 380
Tru9I	TTAA	3 cut(s)	9, 248, 380
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspRI	CASTG	1 cut(s)	487
XceI	RCATGY	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XspI	CTAG	1 cut(s)	287
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.