Rroxscaffold_7G00185340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008838
Physical Location & Seq
Reverse (-)
24739557 .. 24740003
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185340.1

Sequence Viewer

Length: 447 bp
ATGGTTTTGTTCCTTCTCAAGCTCATCTTCTACGCAGTGAGTCTCGTATCGAATTTGGTTTCGCGGTTGATCTTCTCTACCATTGCTCACTTTCTAGTGTTATTGATTCATGGATTCAAACTTCCAGGCCAAGCCATCCATGGTGGATTAGGACAAGTCTCAGAGGCCATCAAGTCATGTTTGGAGTACTTTCTTGGGCTTATTATGGAAGCAATCAGTGCTCTAATATCTACTTTCTTTGATTATCTGATAGACAGTGTTACAGGGTCTGCTGCAGTTACCACATCTACAATTTGGGATCTCTTGGAAAAAACAAAGACTTCACTTGATGAGCTCAAACGTCTCCAGGAGGCTTTCGAGGGACTACCGGAGATGATTTTTAACATTGTGATGGATTTGTGGAACAATTACAAGGATGCTTTAGGATATGTTGTAGAAAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.47

Weight (kDa)

4.88

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 64
AciI CCGC 1 cut(s) 64
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 52
AfaI GTAC 1 cut(s) 188
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 2 cut(s) 124, 345
AluBI AGCT 2 cut(s) 22, 334
AluI AGCT 2 cut(s) 22, 334
Alw21I GWGCWC 2 cut(s) 223, 336
Alw26I GTCTC 3 cut(s) 47, 163, 347
AlwI GGATC 1 cut(s) 306
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 2 cut(s) 127, 165
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 52
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 223, 336
BbvI GCAGC 1 cut(s) 259
BccI CCATC 3 cut(s) 143, 176, 385
BciT130I CCWGG 2 cut(s) 126, 347
BcoDI GTCTC 3 cut(s) 47, 163, 347
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 126, 347
BmrFI CCNGG 2 cut(s) 126, 347
BmsI GCATC 1 cut(s) 406
BpmI CTGGAG 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 367
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 2 cut(s) 126, 347
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 2 cut(s) 135, 421
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 129, 167
BsiHKAI GWGCWC 2 cut(s) 223, 336
BsiSI CCGG 1 cut(s) 368
BslFI GGGAC 1 cut(s) 375
BsmAI GTCTC 3 cut(s) 47, 163, 347
BsmBI CGTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 2 cut(s) 129, 167
Bsp1286I GDGCHC 2 cut(s) 223, 336
Bsp143I GATC 2 cut(s) 69, 298
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 1 cut(s) 64
BspANI GGCC 2 cut(s) 129, 167
BspCNI CTCAG 1 cut(s) 173
BspFNI CGCG 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 2 cut(s) 69, 298
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 126, 347
Bst4CI ACNGT 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 218
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 2 cut(s) 135, 421
BstFNI CGCG 1 cut(s) 64
BstKTI GATC 2 cut(s) 72, 301
BstMAI GTCTC 3 cut(s) 47, 163, 347
BstMBI GATC 2 cut(s) 69, 298
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 2 cut(s) 126, 347
BstSCI CCNGG 2 cut(s) 124, 345
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 2 cut(s) 129, 167
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 2 cut(s) 135, 421
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 3 cut(s) 42, 223, 262
CaiI CAGNNNCTG 1 cut(s) 269
Csp6I GTAC 1 cut(s) 187
CviAII CATG 3 cut(s) 110, 140, 177
CviJI RGCY 7 cut(s) 22, 129, 134, 167, 199, 334, 353
CviKI_1 RGCY 7 cut(s) 22, 129, 134, 167, 199, 334, 353
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 160
DpnI GATC 2 cut(s) 71, 300
DpnII GATC 2 cut(s) 69, 298
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 124, 345
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 3 cut(s) 113, 143, 180
FaiI YATR 5 cut(s) 111, 141, 178, 206, 429
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 1 cut(s) 375
FatI CATG 3 cut(s) 109, 139, 176
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 2 cut(s) 122, 428
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 95
GluI GCNGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 2 cut(s) 129, 167
HapII CCGG 1 cut(s) 368
Hin1II CATG 3 cut(s) 113, 143, 180
HinfI GANTC 3 cut(s) 40, 106, 114
HpaII CCGG 1 cut(s) 368
Hpy188I TCNGA 2 cut(s) 163, 249
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 3 cut(s) 113, 143, 180
Kzo9I GATC 2 cut(s) 69, 298
LpnPI CCDG 6 cut(s) 111, 138, 249, 332, 359, 381
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 259, 277
MalI GATC 2 cut(s) 71, 300
MboI GATC 2 cut(s) 69, 298
MboII GAAGA 2 cut(s) 19, 64
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 2 cut(s) 223, 336
MluCI AATT 3 cut(s) 52, 291, 406
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 3 cut(s) 157, 343, 352
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 389
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 126, 347
MvaI CCWGG 2 cut(s) 126, 347
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 218
NcoI CCATGG 1 cut(s) 139
NdeII GATC 2 cut(s) 69, 298
NlaIII CATG 3 cut(s) 113, 143, 180
PfeI GAWTC 2 cut(s) 106, 114
PfoI TCCNGGA 1 cut(s) 345
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 124, 345
PspGI CCWGG 2 cut(s) 124, 345
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 389
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 2 cut(s) 69, 298
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 2 cut(s) 126, 347
SduI GDGCHC 2 cut(s) 223, 336
SetI ASST 3 cut(s) 24, 336, 343
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 3 cut(s) 52, 291, 406
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 95
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 124, 345
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 343
TaqI TCGA 2 cut(s) 50, 357
TasI AATT 3 cut(s) 52, 291, 406
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 2 cut(s) 106, 114
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 3 cut(s) 42, 223, 262
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 3 cut(s) 42, 223, 262
XapI RAATTY 1 cut(s) 52
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XspI CTAG 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.