RchiOBHm_Chr6g0283651

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008838
Physical Location & Seq
Forward (+)
46879680 .. 46880126
447 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25435

Sequence Viewer

Length: 447 bp
ATGGCTTTCTTCCTTCTCAAGTTCGTCTTCTTCACATTGAGATTCATATCGAACTTGGTTTCGCGCTTGATCTTATCTGCCACTGCCCATCTTCTGGTGTTATTCATCCACGGATTCAGAGCACCAGGCCAAGCCACCCATGGTGCAATACAACAAGTCTCAGAGGTCATCAAGTCATGGTTTGAGTACTTGTTGGAGCTTATAATGGAAGCAATAAGTGCTCTAATTTCTACCTTGTTTGATTATCTAATAGAAGGTCTCACAGCGTCTGCTTCAGGTGCCACTTCAGCAATTGGAGGTCTCATTGAGAAAACAAAGAATTCGCTCGACCGGCTCACAGACTTCCCAGAAATTTTTGAGGGAGTTCCTGAGATGGTTTTTGAAATGGTGATGGACTTGTGGAACAATTGCAAGGATGCTTTAGGATATGTTATAGAGCATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.51

Weight (kDa)

4.93

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 94
AccII CGCG 1 cut(s) 64
AcsI RAATTY 2 cut(s) 319, 351
AcuI CTGAAG 2 cut(s) 258, 270
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 1 cut(s) 383
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 2 cut(s) 124, 223
Alw26I GTCTC 3 cut(s) 163, 263, 305
AlwNI CAGNNNCTG 1 cut(s) 269
AoxI GGCC 1 cut(s) 127
ApoI RAATTY 2 cut(s) 319, 351
AspLEI GCGC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 400
BanI GGYRCC 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 19
Bbv12I GWGCWC 2 cut(s) 124, 223
BccI CCATC 3 cut(s) 96, 367, 385
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 3 cut(s) 163, 263, 305
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 19
BsaBI GATNNNNATC 1 cut(s) 46
BsaI GGTCTC 2 cut(s) 263, 305
BsaJI CCNNGG 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 46
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 109, 139
BseGI GGATG 2 cut(s) 105, 421
BseJI GATNNNNATC 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 2 cut(s) 174, 360
Bsh1236I CGCG 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 331
BshFI GGCC 1 cut(s) 129
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 124, 223
BsiSI CCGG 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 3 cut(s) 163, 263, 305
BsnI GGCC 1 cut(s) 129
Bso31I GGTCTC 2 cut(s) 263, 305
Bsp1286I GDGCHC 2 cut(s) 124, 223
Bsp143I GATC 1 cut(s) 69
Bsp19I CCATGG 1 cut(s) 139
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 2 cut(s) 173, 361
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 2 cut(s) 263, 305
BsrFI RCCGGY 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 2 cut(s) 109, 139
BssMI GATC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 126
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 2 cut(s) 160, 369
BstDSI CCRYGG 2 cut(s) 109, 139
BstF5I GGATG 2 cut(s) 105, 421
BstFNI CGCG 1 cut(s) 64
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 3 cut(s) 163, 263, 305
BstMBI GATC 1 cut(s) 69
BstMCI CGRYCG 1 cut(s) 331
BstMWI GCNNNNNNNGC 4 cut(s) 218, 278, 287, 331
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 124
BstUI CGCG 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 129
BtgI CCRYGG 2 cut(s) 109, 139
BtsCI GGATG 2 cut(s) 105, 421
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 441
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 330
CseI GACGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 187
CviAII CATG 3 cut(s) 140, 177, 440
CviJI RGCY 5 cut(s) 5, 129, 134, 199, 334
CviKI_1 RGCY 5 cut(s) 5, 129, 134, 199, 334
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 160, 369
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 139
Eco31I GGTCTC 2 cut(s) 263, 305
Eco57I CTGAAG 2 cut(s) 258, 270
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 3 cut(s) 143, 180, 443
FaiI YATR 7 cut(s) 47, 141, 178, 203, 429, 434, 441
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 3 cut(s) 139, 176, 439
FokI GGATG 2 cut(s) 92, 428
GlaI GCGC 1 cut(s) 65
HaeIII GGCC 1 cut(s) 129
HapII CCGG 1 cut(s) 331
HgaI GACGC 1 cut(s) 255
HhaI GCGC 1 cut(s) 66
Hin1II CATG 3 cut(s) 143, 180, 443
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 2 cut(s) 42, 114
HpaII CCGG 1 cut(s) 331
HphI GGTGA 1 cut(s) 400
Hpy188I TCNGA 2 cut(s) 119, 163
Hpy188III TCNNGA 1 cut(s) 368
HpyAV CCTTC 2 cut(s) 23, 248
HpyCH4V TGCA 2 cut(s) 146, 411
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 278, 287, 331
HpyF3I CTNAG 2 cut(s) 160, 369
Hsp92II CATG 3 cut(s) 143, 180, 443
HspAI GCGC 1 cut(s) 64
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 7 cut(s) 80, 111, 138, 261, 344, 360, 381
LweI GCATC 1 cut(s) 406
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 3 cut(s) 19, 22, 83
MfeI CAATTG 2 cut(s) 291, 406
MhlI GDGCHC 2 cut(s) 124, 223
MluCI AATT 5 cut(s) 225, 291, 319, 351, 406
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 3 cut(s) 157, 290, 352
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 2 cut(s) 291, 406
MvaI CCWGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 4 cut(s) 218, 278, 287, 331
NcoI CCATGG 1 cut(s) 139
NdeII GATC 1 cut(s) 69
NlaIII CATG 3 cut(s) 143, 180, 443
NlaIV GGNNCC 1 cut(s) 280
NspI RCATGY 1 cut(s) 443
PaeI GCATGC 1 cut(s) 443
PfeI GAWTC 2 cut(s) 42, 114
PflMI CCANNNNNTGG 1 cut(s) 94
PsiI TTATAA 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 269
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 69
ScaI AGTACT 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 2 cut(s) 124, 223
SetI ASST 6 cut(s) 168, 201, 236, 259, 280, 301
SfaNI GCATC 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SphI GCATGC 1 cut(s) 443
Sse9I AATT 5 cut(s) 225, 291, 319, 351, 406
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 1 cut(s) 139
TaqI TCGA 2 cut(s) 50, 327
TasI AATT 5 cut(s) 225, 291, 319, 351, 406
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 2 cut(s) 42, 114
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 34, 94
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 88
Van91I CCANNNNNTGG 1 cut(s) 94
XapI RAATTY 2 cut(s) 319, 351
XceI RCATGY 1 cut(s) 443
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.