Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0018797

Physical Location & Seq

Genomic Coordinates Forward (+)

15695713 .. 15697486

Gene Structure 1774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCAGCCGAGCTTATGCATGCGGTTCTGTACGACAGCTATGGTGGAGGACCTTCTAGTTTAAAGCATGTTCAAGTTCCAATTCCAACTCCTAAGAAAAATGAAGTTTTGCTGAAGCTGGAAGCAGCAAGTCTAAATCCAGGTGATTGTAAGATACAGAAAGGCCAGGCACGACCTATTTTCCCACGCAAATTGCCTCACATACCTGTTACTGATGTGGCTGGAGAGGTTGTAGAGCTTGGAGAAGATGTCAAAAACTTCAAAGTGGGTGACAAGGTCGTGGCAATGCCTAGCTATGGTTATGGAGGTGGACTGGGTGAGTTTGCTGCAGCTAATGCCGAAATGGTAGTTGCTAGACCTTCTGAAGTTTCAGCAGCAGATGGTGCAGGCTTACCAGTTGCTGCTCTCAGTGCTCACTGGGCTCTCACCAAAGATGCAGAGATCAAGCTTGATGGAACAGACGAGCCGAAGAACATACTCATTACCGGGGCCTCTGGTAACGTCGGTCTCTATGCAGTCCAACTAGCAAAGCTCGGAAACGCTCATGTCACCGCCACTTGTGGAGCTCGTAACATTGAACTTGTCAAGAGCTCCTTGTTTACTTTTGTTCTTAAGAAACTTACCTTCTCCAAGAAGACACTGGTGCCATTGATCATAAGTCTCAAGGGTGAGAACCTGGATTTTCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACAGTGATCGACTCGACTTTTCCCTTGAGCAAGGCTGAAGAAGCTTGGGCTAAGAGACTTGATGGCAAGAATACTGGAAAGATCATTGTGGAGCAGAAAGTACATGACCTGAACTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

280

Amino Acids

29.66

Weight (kDa)

8.84

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	33 - 120	1.2e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N_2	PF13602	200 - 269	6.3e-12	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018797)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18260 FvH4_2g18300
malus_domestica	MD05G1167100.v1.1
pyrus_communis	pycom10g13560
rosa_multiflora	Rmu_co8075528.1_g000001 Rmu_sc0001521.1_g000008 Rmu_sc0001521.1_g000010 Rmu_sc0002906.1_g000001 Rmu_sc0023365.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AciI	CCGC	2 cut(s)	23, 552
AcuI	CTGAAG	3 cut(s)	134, 384, 774
AfaI	GTAC	2 cut(s)	32, 819
AfiI	CCNNNNNNNGG	1 cut(s)	296
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	3 cut(s)	74, 262, 578
AjnI	CCWGG	3 cut(s)	139, 165, 675
Alw21I	GWGCWC	3 cut(s)	415, 568, 593
Alw26I	GTCTC	3 cut(s)	512, 665, 766
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	2 cut(s)	163, 489
ApeKI	GCWGC	6 cut(s)	5, 125, 326, 329, 374, 401
AspS9I	GGNCC	2 cut(s)	50, 489
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	7 cut(s)	155, 281, 329, 418, 541, 680, 709
AvaII	GGWCC	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	3 cut(s)	424, 568, 593
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	3 cut(s)	415, 568, 593
BbvI	GCAGC	6 cut(s)	17, 137, 313, 341, 386, 388
BccI	CCATC	3 cut(s)	374, 446, 773
BciT130I	CCWGG	3 cut(s)	141, 167, 677
BclI	TGATCA	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	487
BcoDI	GTCTC	3 cut(s)	512, 665, 766
BfaI	CTAG	4 cut(s)	57, 291, 354, 524
BfmI	CTRYAG	1 cut(s)	327
BfrI	CTTAAG	1 cut(s)	611
BisI	GCNGC	6 cut(s)	6, 126, 327, 330, 375, 402
BlsI	GCNGC	6 cut(s)	7, 127, 328, 331, 376, 403
Bme1390I	CCNGG	4 cut(s)	141, 167, 487, 677
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	50, 489
BmiI	GGNNCC	2 cut(s)	490, 645
BmrFI	CCNGG	4 cut(s)	141, 167, 487, 677
BmrI	ACTGGG	2 cut(s)	323, 427
BmsI	GCATC	1 cut(s)	424
BmuI	ACTGGG	2 cut(s)	323, 427
BpiI	GAAGAC	1 cut(s)	641
BpmI	CTGGAG	1 cut(s)	243
BpuEI	CTTGAG	3 cut(s)	647, 698, 763
BpuMI	CCSGG	1 cut(s)	487
BsaI	GGTCTC	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	486
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 234, 246, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	5 cut(s)	318, 395, 422, 645, 796
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	3 cut(s)	141, 167, 677
BseDI	CCNNGG	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	421
BseNI	ACTGG	5 cut(s)	318, 395, 422, 645, 796
BseXI	GCAGC	6 cut(s)	17, 137, 313, 341, 386, 388
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	165, 491
BshNI	GGYRCC	1 cut(s)	643
BsiHKAI	GWGCWC	3 cut(s)	415, 568, 593
BsiSI	CCGG	1 cut(s)	486
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	3 cut(s)	512, 665, 766
BsnI	GGCC	2 cut(s)	165, 491
Bso31I	GGTCTC	1 cut(s)	512
Bsp1286I	GDGCHC	4 cut(s)	415, 424, 568, 593
Bsp143I	GATC	4 cut(s)	441, 651, 723, 798
BspACI	CCGC	2 cut(s)	23, 552
BspANI	GGCC	2 cut(s)	165, 491
BspCNI	CTCAG	1 cut(s)	420
BspLI	GGNNCC	2 cut(s)	490, 645
BspMAI	CTGCAG	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	643
BspTI	CTTAAG	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	5 cut(s)	318, 395, 422, 645, 796
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	4 cut(s)	441, 651, 723, 798
Bst2UI	CCWGG	3 cut(s)	141, 167, 677
Bst4CI	ACNGT	1 cut(s)	721
BstAFI	CTTAAG	1 cut(s)	611
BstAPI	GCANNNNNTGC	2 cut(s)	335, 383
BstC8I	GCNNGC	2 cut(s)	21, 388
BstDEI	CTNAG	4 cut(s)	93, 407, 768, 837
BstKTI	GATC	4 cut(s)	444, 654, 726, 801
BstMAI	GTCTC	3 cut(s)	512, 665, 766
BstMBI	GATC	4 cut(s)	441, 651, 723, 798
BstMWI	GCNNNNNNNGC	5 cut(s)	335, 383, 410, 419, 758
BstNI	CCWGG	3 cut(s)	141, 167, 677
BstNSI	RCATGY	2 cut(s)	23, 71
BstSCI	CCNGG	4 cut(s)	139, 165, 485, 675
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	6 cut(s)	17, 137, 313, 341, 386, 388
BstV2I	GAAGAC	1 cut(s)	641
BsuRI	GGCC	2 cut(s)	165, 491
BtsIMutI	CAGTG	4 cut(s)	415, 415, 638, 726
Cac8I	GCNNGC	2 cut(s)	21, 388
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	50, 489
Csp6I	GTAC	2 cut(s)	31, 818
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	4 cut(s)	20, 68, 545, 821
CviQI	GTAC	2 cut(s)	31, 818
DdeI	CTNAG	4 cut(s)	93, 407, 768, 837
DpnI	GATC	4 cut(s)	443, 653, 725, 800
DpnII	GATC	4 cut(s)	441, 651, 723, 798
DraI	TTTAAA	1 cut(s)	63
Ecl136II	GAGCTC	2 cut(s)	566, 591
Eco24I	GRGCYC	3 cut(s)	424, 568, 593
Eco31I	GGTCTC	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	2 cut(s)	566, 591
Eco57I	CTGAAG	3 cut(s)	134, 384, 774
EcoICRI	GAGCTC	2 cut(s)	566, 591
EcoO109I	RGGNCCY	2 cut(s)	50, 489
EcoRII	CCWGG	3 cut(s)	139, 165, 675
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	3 cut(s)	424, 568, 593
FaeI	CATG	4 cut(s)	23, 71, 548, 824
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FatI	CATG	4 cut(s)	19, 67, 544, 820
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	6 cut(s)	6, 126, 327, 330, 375, 402
FriOI	GRGCYC	3 cut(s)	424, 568, 593
Fsp4HI	GCNGC	6 cut(s)	6, 126, 327, 330, 375, 402
FspBI	CTAG	4 cut(s)	57, 291, 354, 524
GluI	GCNGC	6 cut(s)	6, 126, 327, 330, 375, 402
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	165, 491
HapII	CCGG	1 cut(s)	486
Hin1II	CATG	4 cut(s)	23, 71, 548, 824
HindIII	AAGCTT	2 cut(s)	446, 759
HinfI	GANTC	1 cut(s)	728
HpaII	CCGG	1 cut(s)	486
HphI	GGTGA	7 cut(s)	155, 281, 329, 418, 541, 680, 709
Hpy166II	GTNNAC	2 cut(s)	311, 600
Hpy188I	TCNGA	2 cut(s)	364, 536
Hpy188III	TCNNGA	2 cut(s)	586, 715
Hpy8I	GTNNAC	2 cut(s)	311, 600
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	5 cut(s)	63, 369, 634, 694, 698
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	5 cut(s)	19, 329, 386, 437, 515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	335, 383, 410, 419, 758
HpyF3I	CTNAG	4 cut(s)	93, 407, 768, 837
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	4 cut(s)	23, 71, 548, 824
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	4 cut(s)	441, 651, 723, 798
LmnI	GCTCC	3 cut(s)	563, 596, 808
Lsp1109I	GCAGC	6 cut(s)	17, 137, 313, 341, 386, 388
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	4 cut(s)	57, 291, 354, 524
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	5 cut(s)	208, 269, 497, 547, 569
MalI	GATC	4 cut(s)	443, 653, 725, 800
MboI	GATC	4 cut(s)	441, 651, 723, 798
MboII	GAAGA	4 cut(s)	257, 481, 646, 767
MhlI	GDGCHC	4 cut(s)	415, 424, 568, 593
MluCI	AATT	2 cut(s)	81, 191
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	2 cut(s)	110, 544
MnlI	CCTC	5 cut(s)	41, 207, 220, 299, 502
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	3 cut(s)	62, 612, 690
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	4 cut(s)	141, 167, 487, 677
MvaI	CCWGG	3 cut(s)	141, 167, 677
MwoI	GCNNNNNNNGC	5 cut(s)	335, 383, 410, 419, 758
NciI	CCSGG	1 cut(s)	487
NdeII	GATC	4 cut(s)	441, 651, 723, 798
NlaIII	CATG	4 cut(s)	23, 71, 548, 824
NlaIV	GGNNCC	2 cut(s)	490, 645
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	2 cut(s)	269, 547
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	23, 71
PaeI	GCATGC	1 cut(s)	23
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	6 cut(s)	7, 127, 328, 331, 376, 403
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
PpuMI	RGGWCCY	1 cut(s)	50
Psp124BI	GAGCTC	2 cut(s)	568, 593
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	3 cut(s)	139, 165, 675
PspGI	CCWGG	3 cut(s)	139, 165, 675
PspN4I	GGNNCC	2 cut(s)	490, 645
PspPI	GGNCC	2 cut(s)	50, 489
PspPPI	RGGWCCY	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	401
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	2 cut(s)	32, 819
RsaNI	GTAC	2 cut(s)	31, 818
SacI	GAGCTC	2 cut(s)	568, 593
SaqAI	TTAA	3 cut(s)	62, 612, 690
SatI	GCNGC	6 cut(s)	6, 126, 327, 330, 375, 402
Sau3AI	GATC	4 cut(s)	441, 651, 723, 798
Sau96I	GGNCC	2 cut(s)	50, 489
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	4 cut(s)	141, 167, 487, 677
SduI	GDGCHC	4 cut(s)	415, 424, 568, 593
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	4 cut(s)	611, 662, 713, 742
SmoI	CTYRAG	4 cut(s)	611, 662, 713, 742
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	81, 191
SsiI	CCGC	2 cut(s)	23, 552
SspMI	CTAG	4 cut(s)	57, 291, 354, 524
SstI	GAGCTC	2 cut(s)	568, 593
StyD4I	CCNGG	4 cut(s)	139, 165, 485, 675
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	2 cut(s)	726, 731
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	2 cut(s)	81, 191
TatI	WGTACW	1 cut(s)	817
Tru1I	TTAA	3 cut(s)	62, 612, 690
Tru9I	TTAA	3 cut(s)	62, 612, 690
TscAI	CASTG	4 cut(s)	415, 422, 645, 726
TseFI	GTSAC	2 cut(s)	269, 547
TseI	GCWGC	6 cut(s)	5, 125, 326, 329, 374, 401
Tsp45I	GTSAC	2 cut(s)	269, 547
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	4 cut(s)	415, 422, 645, 726
Tth111I	GACNNNGTC	1 cut(s)	275
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	50
XceI	RCATGY	2 cut(s)	23, 71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XspI	CTAG	4 cut(s)	57, 291, 354, 524
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.