Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001521.1

Orthogroup ID

OG0018797

Physical Location & Seq

Genomic Coordinates Forward (+)

25377 .. 27624

Gene Structure 2248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001521.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atggcaaaaaagctcatgcatgcccttcaatacaatgcttatggtggaggtccttcaggcttaaagcatgttgaagttccagttcccactccaaataaagatgaagtattgatgaaattggaggcagcgagtctaaatccatttgattggaaggttcagaaaggcatgatttggcctttgctgcctcgcaagtttccacatatacctggcactgatgtggcaggagaggttgtagaggttggaccagaagtcaaaaatttcaaagccggtgacaaagttgtagccatggttaatcctcttttggcggttggcacccttcatcctgccaaagtcaatctcaaaattctcgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

117

Amino Acids

12.7

Weight (kDa)

9.19

Isoelectric Point (pI)

27.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018797)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18260 FvH4_2g18300
malus_domestica	MD05G1167100.v1.1
pyrus_communis	pycom10g13560
rosa_multiflora	Rmu_co8075528.1_g000001 Rmu_sc0001521.1_g000008 Rmu_sc0001521.1_g000010 Rmu_sc0002906.1_g000001 Rmu_sc0023365.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AciI	CCGC	1 cut(s)	305
AcsI	RAATTY	2 cut(s)	256, 342
AcuI	CTGAAG	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	29, 74, 262
AhdI	GACNNNNNGTC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	205
AleI	CACNNNNGTG	1 cut(s)	215
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	125, 181
ApoI	RAATTY	2 cut(s)	256, 342
AspS9I	GGNCC	2 cut(s)	50, 242
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	2 cut(s)	50, 242
BanI	GGYRCC	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	137, 168
BciT130I	CCWGG	1 cut(s)	207
BfaI	CTAG	1 cut(s)	352
BisI	GCNGC	2 cut(s)	126, 182
BlsI	GCNGC	2 cut(s)	127, 183
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	50, 242
BmeRI	GACNNNNNGTC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	50, 242
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	319
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	137, 168
BshFI	GGCC	1 cut(s)	175
BshNI	GGYRCC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	267
BsnI	GGCC	1 cut(s)	175
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	2 cut(s)	23, 71
BstSCI	CCNGG	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	137, 168
BstXI	CCANNNNNNTGG	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	50, 242
CviAII	CATG	5 cut(s)	16, 20, 68, 166, 286
CviJI	RGCY	5 cut(s)	13, 60, 175, 266, 284
CviKI_1	RGCY	5 cut(s)	13, 60, 175, 266, 284
DriI	GACNNNNNGTC	1 cut(s)	248
Eam1105I	GACNNNNNGTC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	50, 242
Eco57I	CTGAAG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	5 cut(s)	19, 23, 71, 169, 289
FaiI	YATR	8 cut(s)	17, 21, 42, 69, 167, 201, 203, 287
FatI	CATG	5 cut(s)	15, 19, 67, 165, 285
Fnu4HI	GCNGC	2 cut(s)	126, 182
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	126, 182
FspBI	CTAG	1 cut(s)	352
GluI	GCNGC	2 cut(s)	126, 182
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	267
Hin1II	CATG	5 cut(s)	19, 23, 71, 169, 289
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	347
HpyAV	CCTTC	4 cut(s)	35, 63, 145, 326
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
Hsp92II	CATG	5 cut(s)	19, 23, 71, 169, 289
LpnPI	CCDG	8 cut(s)	42, 93, 192, 207, 219, 258, 280, 336
Lsp1109I	GCAGC	2 cut(s)	137, 168
MaeI	CTAG	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	269
MluCI	AATT	3 cut(s)	116, 256, 342
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	6 cut(s)	41, 115, 195, 220, 229, 306
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	2 cut(s)	62, 291
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	285
NlaIII	CATG	5 cut(s)	19, 23, 71, 169, 289
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	23, 71
OliI	CACNNNNGTG	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	127, 183
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	2 cut(s)	50, 242
PspPPI	RGGWCCY	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	62, 291
SatI	GCNGC	2 cut(s)	126, 182
Sau96I	GGNCC	2 cut(s)	50, 242
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	6 cut(s)	15, 52, 156, 208, 231, 240
SinI	GGWCC	2 cut(s)	50, 242
SmiMI	CAYNNNNRTG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	3 cut(s)	116, 256, 342
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	285
TaqI	TCGA	1 cut(s)	348
TasI	AATT	3 cut(s)	116, 256, 342
Tru1I	TTAA	2 cut(s)	62, 291
Tru9I	TTAA	2 cut(s)	62, 291
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	2 cut(s)	125, 181
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	3 cut(s)	117, 128, 308
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	50, 242
XapI	RAATTY	2 cut(s)	256, 342
XceI	RCATGY	2 cut(s)	23, 71
XspI	CTAG	1 cut(s)	352
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.