Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0018797

Physical Location & Seq

Genomic Coordinates Forward (+)

29705745 .. 29706471

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1167100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCAGCGAAGCTTATGCATGCGGTTCAGTACAAAAGCTTTGGTGGAGGACCTTCTGGCTTGAAGATTCCAATCCCTACCCTCAAGAAAGATGAGGTTCTATTGAAACTAGAAGCAGCTAGTCTGAATCCAGGTGATTTTAAAATTCAGAAGGGCCTCGCACGCCCATTTTTACTGCACAAATTGCCTCACACACCTGGTAATTTGGTTCTCTTTTGCGTCAGCGCAAATTACAAAGATAATGAGACCTGTTTTGTGATTTATGAATTTGATGTCGTCAAGTCTTGGGCCAGTAGGTTGGACAAGGAGTCAAGAAGTTCTAAGTGGGTGACAAAGTTGTGGCATTACTTAGCTTTAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

121

Amino Acids

13.47

Weight (kDa)

9.52

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018797)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18260 FvH4_2g18300
malus_domestica	MD05G1167100.v1.1
pyrus_communis	pycom10g13560
rosa_multiflora	Rmu_co8075528.1_g000001 Rmu_sc0001521.1_g000008 Rmu_sc0001521.1_g000010 Rmu_sc0002906.1_g000001 Rmu_sc0023365.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AcsI	RAATTY	2 cut(s)	144, 266
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	64, 106
AhdI	GACNNNNNGTC	1 cut(s)	307
AjnI	CCWGG	2 cut(s)	130, 196
AluBI	AGCT	4 cut(s)	13, 39, 119, 353
AluI	AGCT	4 cut(s)	13, 39, 119, 353
Alw26I	GTCTC	1 cut(s)	239
AoxI	GGCC	2 cut(s)	154, 288
ApeKI	GCWGC	2 cut(s)	5, 116
ApoI	RAATTY	2 cut(s)	144, 266
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	3 cut(s)	50, 154, 288
AsuHPI	GGTGA	2 cut(s)	146, 340
AvaII	GGWCC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	17, 128
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	132, 198
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	110, 120
BisI	GCNGC	2 cut(s)	6, 117
BlsI	GCNGC	2 cut(s)	7, 118
Bme1390I	CCNGG	2 cut(s)	132, 198
Bme18I	GGWCC	1 cut(s)	50
BmeRI	GACNNNNNGTC	1 cut(s)	307
BmgT120I	GGNCC	3 cut(s)	50, 154, 288
BmrFI	CCNGG	2 cut(s)	132, 198
BpuEI	CTTGAG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	132, 198
BseJI	GATNNNNATC	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	17, 128
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	2 cut(s)	156, 290
BsmAI	GTCTC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	156, 290
Bso31I	GGTCTC	1 cut(s)	239
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	156, 290
BspTNI	GGTCTC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	132, 198
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	21, 163
BstDEI	CTNAG	2 cut(s)	321, 349
BstHHI	GCGC	1 cut(s)	227
BstMAI	GTCTC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 184
BstNI	CCWGG	2 cut(s)	132, 198
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	130, 196
BstV1I	GCAGC	2 cut(s)	17, 128
BstXI	CCANNNNNNTGG	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	156, 290
Cac8I	GCNNGC	2 cut(s)	21, 163
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	50, 154, 288
CseI	GACGC	1 cut(s)	208
CsiI	ACCWGGT	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	7 cut(s)	13, 39, 60, 119, 156, 290, 353
CviKI_1	RGCY	7 cut(s)	13, 39, 60, 119, 156, 290, 353
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	321, 349
DraI	TTTAAA	1 cut(s)	142
DriI	GACNNNNNGTC	1 cut(s)	307
Eam1105I	GACNNNNNGTC	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	50
EcoO109I	RGGNCCY	2 cut(s)	50, 154
EcoRII	CCWGG	2 cut(s)	130, 196
EcoT22I	ATGCAT	1 cut(s)	21
FaeI	CATG	1 cut(s)	23
FaiI	YATR	3 cut(s)	17, 21, 264
FatI	CATG	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	6, 117
Fsp4HI	GCNGC	2 cut(s)	6, 117
FspBI	CTAG	2 cut(s)	110, 120
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	2 cut(s)	6, 117
HaeIII	GGCC	2 cut(s)	156, 290
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HindIII	AAGCTT	2 cut(s)	11, 37
HinfI	GANTC	3 cut(s)	67, 127, 308
HphI	GGTGA	2 cut(s)	146, 340
Hpy188I	TCNGA	2 cut(s)	126, 150
Hpy188III	TCNNGA	2 cut(s)	85, 312
HpyAV	CCTTC	2 cut(s)	63, 145
HpyCH4V	TGCA	2 cut(s)	19, 178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 184
HpyF3I	CTNAG	2 cut(s)	321, 349
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	1 cut(s)	225
LpnPI	CCDG	7 cut(s)	42, 117, 144, 183, 210, 262, 304
Lsp1109I	GCAGC	2 cut(s)	17, 128
MabI	ACCWGGT	1 cut(s)	196
MaeI	CTAG	2 cut(s)	110, 120
MaeIII	GTNAC	1 cut(s)	328
MboII	GAAGA	1 cut(s)	76
MluCI	AATT	5 cut(s)	144, 182, 202, 229, 266
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	5 cut(s)	41, 88, 92, 167, 198
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	132, 198
MvaI	CCWGG	2 cut(s)	132, 198
MwoI	GCNNNNNNNGC	2 cut(s)	162, 184
NlaIII	CATG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	328
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	67, 127
PkrI	GCNGC	2 cut(s)	7, 118
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	130, 196
PspGI	CCWGG	2 cut(s)	130, 196
PspPI	GGNCC	3 cut(s)	50, 154, 288
PspPPI	RGGWCCY	1 cut(s)	50
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	6, 117
Sau96I	GGNCC	3 cut(s)	50, 154, 288
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	132, 198
SexAI	ACCWGGT	1 cut(s)	196
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	5 cut(s)	144, 182, 202, 229, 266
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	2 cut(s)	110, 120
StyD4I	CCNGG	2 cut(s)	130, 196
TasI	AATT	5 cut(s)	144, 182, 202, 229, 266
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	67, 127
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	5, 116
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	2 cut(s)	144, 266
XceI	RCATGY	1 cut(s)	23
XspI	CTAG	2 cut(s)	110, 120
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.