Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023365.1

Orthogroup ID

OG0018797

Physical Location & Seq

Genomic Coordinates Forward (+)

19078 .. 19617

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023365.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atggcagcaaaacttatgcgtgcggttcagtacgacggttatggtggaggaccttccggtctaaagcatgttgaggttccgatcccaactccgaagaaagatgaggttttgctgaaattggaagcggctaccataaatccaattgattggaaagttcagaaaggcgtattccgcccttttattccaagaaagttcccttatatacctggtaattttcctttcaattatcgtcagtgtctggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

81

Amino Acids

9.16

Weight (kDa)

9.72

Isoelectric Point (pI)

20.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018797)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18260 FvH4_2g18300
malus_domestica	MD05G1167100.v1.1
pyrus_communis	pycom10g13560
rosa_multiflora	Rmu_co8075528.1_g000001 Rmu_sc0001521.1_g000008 Rmu_sc0001521.1_g000010 Rmu_sc0002906.1_g000001 Rmu_sc0023365.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	57
AciI	CCGC	3 cut(s)	23, 125, 172
AclWI	GGATC	1 cut(s)	76
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	205
AlwI	GGATC	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	207
BisI	GCNGC	2 cut(s)	6, 126
BlsI	GCNGC	2 cut(s)	7, 127
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	3 cut(s)	23, 125, 172
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	76
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	21
CaiI	CAGNNNCTG	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	1 cut(s)	128
CviKI_1	RGCY	1 cut(s)	128
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DrdI	GACNNNNNNGTC	1 cut(s)	57
DseDI	GACNNNNNNGTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	71
FaiI	YATR	6 cut(s)	17, 42, 69, 134, 201, 203
FatI	CATG	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	6, 126
Fsp4HI	GCNGC	2 cut(s)	6, 126
GluI	GCNGC	2 cut(s)	6, 126
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	1 cut(s)	71
HpaII	CCGG	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	81, 93, 159
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	81
LpnPI	CCDG	4 cut(s)	70, 192, 219, 224
Lsp1109I	GCAGC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	205
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	1 cut(s)	106
MfeI	CAATTG	1 cut(s)	141
MluCI	AATT	4 cut(s)	116, 141, 211, 223
MnlI	CCTC	3 cut(s)	41, 67, 97
MseI	TTAA	1 cut(s)	244
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	171
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	78
NspI	RCATGY	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	7, 127
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PstNI	CAGNNNCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	244
SatI	GCNGC	2 cut(s)	6, 126
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	4 cut(s)	55, 78, 108, 208
SexAI	ACCWGGT	1 cut(s)	205
SgeI	CNNG	6 cut(s)	32, 69, 80, 198, 218, 219
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	4 cut(s)	116, 141, 211, 223
SsiI	CCGC	3 cut(s)	23, 125, 172
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	38
TasI	AATT	4 cut(s)	116, 141, 211, 223
TauI	GCSGC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	244
Tru9I	TTAA	1 cut(s)	244
TscAI	CASTG	1 cut(s)	239
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	50
XceI	RCATGY	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.