FvH4_2g19920

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017244
Physical Location & Seq
Forward (+)
16805358 .. 16806653
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19920.t1

Sequence Viewer

Length: 1296 bp
ATGAATATTGATGATCTGCCTGGCGTGGTATTGGTTGAGATCCTTTCTCGACTTCCTTGCTATAAACTTGTTTTTCAATCCAAGTGTGTCTCCAAGCGTTGGTGCGCTCTCATCTCAGATCCTTACTTCATTGGCCGCTTTCTATACCATCTCCAAAGTACTGCTATGGAAGCGCCACTACTAATCCGTACTTTGATAAACCCCAAAGGGGTGGAACTGTCATGCTCACCATCCTGCTGGTCGTCCAATTTGCTAGCACCGGTATTCAGAAAACTCATGAGTTTCCATGGATTGAAACATGAGCCTATTGTGAAAGCTACTTATAACGACTTAGTTTTGTGCTGCGAAGATGAGATGGAGTTCTACTACATTTGCAATCCATACACACTGGAATTTGTTGCTCTTCCTCCCTCTCCTCGGTCCTATGCTTGGCCCCCAAGGAAAGCACCAGCAGCAATCATCTGTGATCACAACTACTATGATTACACGAAGGAAGGAACAGGACACAACACCATCCTGCTTAAGGCTGATTATAGGTGCAAGATTGTCAGAATACTTCCATTTGTAGTAGGGGAAGATCCTTATCAATCTTCCAAGTTTACAGTAGAGATATTTTCTTCTGAGACTGGTGAGTGGAAAGAGTCGATCATAGCCTCCCCTATACCTTTGTATTTGAACACAAGCCATATTAGCTTTGCTTACAATGGAATGTTGTATTGGTGGGATTCTTTTACCAACCGTCATGTTGGGATGGATCCTTTTATGATCAACAGTTATGGTAACAGTGATCATTATAAACTTCGTTTCATGGAATTTGATGGTGAAGTTTTAGATCACCGCGACACCATTAACTGCTTTGGGGTGTGCCGAGCGGGTCTGCGTATGTGTTACTACCAGGAGGAAGAAGATATTTTGTATGTTTGGGACTGGAGAGAAGAAGGATATGGTGATCAGAATGGAGCTGGCATCAGTGAATTGTGTTGGAAACAGACTGGAGTTTATTCACCGGGATTAGAACCTGATAGTGTTTTGGAATTGTTAGCGTTTGATCCAAATAATGATGACATGTTGTATCTTCTTGATGTTCATGAAGAAATTTGTCTATGCAACATTCGAACAGGAGATTTGTCAAGGCTCGTTGGAAAGGATCATGTGAATGTTTTCCACTTCTTTCCATTAGTTCTTCCATGGTGGCCAACACCAGTTCCTAGACTACCAAAGCCTTCATGGCTCTCAAAGTTTATGAAGAAGTTGAGGCTAGTAGCCTACTGTATAGTTTCCATTTGCTCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

432

Amino Acids

49.8

Weight (kDa)

5.43

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 100 - 377 1.5e-12 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017244)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19900 FvH4_2g19920
prunus_persica Prupe.1G510400_v2.0.a1
pyrus_communis pycom05g29490
rosa_chinensis RchiOBHm_Chr6g0285591
rosa_laevigata RLG00000012624
rosa_multiflora Rmu_co8292461.1_g000001 Rmu_sc0017770.1_g000007
rosa_roxburghii Rroxscaffold_7G00182920
rosa_rugosa Rorug06G0175900
rosa_samantha Rh6BG288600 Rh6BG288700 Rh6CG289800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 324, 795
AccB7I CCANNNNNTGG 1 cut(s) 99
AccBSI CCGCTC 1 cut(s) 872
AccII CGCG 1 cut(s) 840
AciI CCGC 3 cut(s) 136, 838, 872
AclWI GGATC 7 cut(s) 34, 113, 572, 749, 762, 1043, 1155
AcoI YGGCCR 2 cut(s) 133, 1193
AcsI RAATTY 3 cut(s) 392, 812, 1095
AfaI GTAC 2 cut(s) 160, 190
AfiI CCNNNNNNNGG 5 cut(s) 99, 208, 417, 429, 523
AflII CTTAAG 1 cut(s) 521
AflIII ACRYGT 1 cut(s) 1065
AgeI ACCGGT 1 cut(s) 259
AgsI TTSAA 3 cut(s) 77, 295, 676
AjnI CCWGG 2 cut(s) 19, 894
AjuI GAANNNNNNNTTGG 2 cut(s) 700, 732
AluBI AGCT 3 cut(s) 317, 693, 962
AluI AGCT 3 cut(s) 317, 693, 962
Alw26I GTCTC 2 cut(s) 94, 617
AlwI GGATC 7 cut(s) 34, 113, 572, 749, 762, 1043, 1155
AoxI GGCC 3 cut(s) 133, 431, 1193
ApeKI GCWGC 2 cut(s) 342, 452
ApoI RAATTY 3 cut(s) 392, 812, 1095
AsiGI ACCGGT 1 cut(s) 259
Asp700I GAANNNNTTC 1 cut(s) 1160
AspLEI GCGC 2 cut(s) 107, 175
AspS9I GGNCC 2 cut(s) 420, 432
AsuC2I CCSGG 1 cut(s) 1008
AsuHPI GGTGA 6 cut(s) 219, 641, 827, 833, 959, 996
AsuII TTCGAA 1 cut(s) 1114
AsuNHI GCTAGC 1 cut(s) 253
AvaII GGWCC 1 cut(s) 420
BalI TGGCCA 1 cut(s) 1195
BamHI GGATCC 1 cut(s) 754
BarI GAAGNNNNNNTAC 2 cut(s) 162, 194
BbvI GCAGC 2 cut(s) 329, 464
BccI CCATC 6 cut(s) 156, 238, 349, 521, 745, 812
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BciT130I CCWGG 2 cut(s) 21, 896
BclI TGATCA 4 cut(s) 466, 765, 787, 949
BcnI CCSGG 1 cut(s) 1008
BcoDI GTCTC 2 cut(s) 94, 617
BfaI CTAG 3 cut(s) 254, 1209, 1259
BfoI RGCGCY 1 cut(s) 176
BfrI CTTAAG 1 cut(s) 521
BglI GCCNNNNNGGC 1 cut(s) 1228
BisI GCNGC 3 cut(s) 136, 343, 453
BlsI GCNGC 3 cut(s) 137, 344, 454
BmcAI AGTACT 1 cut(s) 160
Bme1390I CCNGG 3 cut(s) 21, 896, 1008
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 2 cut(s) 420, 432
BmiI GGNNCC 2 cut(s) 434, 756
BmrFI CCNGG 3 cut(s) 21, 896, 1008
BmsI GCATC 1 cut(s) 975
BmtI GCTAGC 1 cut(s) 257
BpmI CTGGAG 2 cut(s) 949, 1014
Bpu14I TTCGAA 1 cut(s) 1114
BpuMI CCSGG 1 cut(s) 1008
BsaBI GATNNNNATC 1 cut(s) 582
BsaJI CCNNGG 4 cut(s) 286, 416, 437, 1187
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 208, 417, 429, 523
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 5 cut(s) 393, 631, 932, 997, 1202
Bse8I GATNNNNATC 1 cut(s) 582
BseBI CCWGG 2 cut(s) 21, 896
BseDI CCNNGG 4 cut(s) 286, 416, 437, 1187
BseGI GGATG 3 cut(s) 230, 513, 756
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 5 cut(s) 99, 208, 417, 429, 523
BseMII CTCAG 3 cut(s) 129, 612, 1281
BseNI ACTGG 5 cut(s) 393, 631, 932, 997, 1202
BseRI GAGGAG 1 cut(s) 405
BseXI GCAGC 2 cut(s) 329, 464
Bsh1236I CGCG 1 cut(s) 840
BshFI GGCC 3 cut(s) 135, 433, 1195
BshTI ACCGGT 1 cut(s) 259
BsiSI CCGG 2 cut(s) 260, 1007
BslFI GGGAC 1 cut(s) 938
BslI CCNNNNNNNGG 5 cut(s) 99, 208, 417, 429, 523
BsmAI GTCTC 2 cut(s) 94, 617
BsmFI GGGAC 1 cut(s) 938
BsnI GGCC 3 cut(s) 135, 433, 1195
Bsp119I TTCGAA 1 cut(s) 1114
Bsp19I CCATGG 2 cut(s) 286, 1187
BspACI CCGC 3 cut(s) 136, 838, 872
BspANI GGCC 3 cut(s) 135, 433, 1195
BspCNI CTCAG 3 cut(s) 128, 613, 1282
BspFNI CGCG 1 cut(s) 840
BspHI TCATGA 2 cut(s) 276, 1087
BspLI GGNNCC 2 cut(s) 434, 756
BspOI GCTAGC 1 cut(s) 257
BspPI GGATC 7 cut(s) 34, 113, 572, 749, 762, 1043, 1155
BspQI GCTCTTC 1 cut(s) 408
BspT104I TTCGAA 1 cut(s) 1114
BspTI CTTAAG 1 cut(s) 521
BsrBI CCGCTC 1 cut(s) 872
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 5 cut(s) 393, 631, 932, 997, 1202
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 4 cut(s) 286, 416, 437, 1187
BssT1I CCWWGG 3 cut(s) 286, 437, 1187
Bst2UI CCWGG 2 cut(s) 21, 896
Bst4CI ACNGT 6 cut(s) 219, 604, 740, 773, 785, 1271
Bst6I CTCTTC 1 cut(s) 408
BstAFI CTTAAG 1 cut(s) 521
BstBI TTCGAA 1 cut(s) 1114
BstC8I GCNNGC 2 cut(s) 255, 964
BstDEI CTNAG 4 cut(s) 115, 331, 621, 1290
BstDSI CCRYGG 2 cut(s) 286, 1187
BstENI CCTNNNNNAGG 1 cut(s) 521
BstF5I GGATG 3 cut(s) 230, 513, 756
BstFNI CGCG 1 cut(s) 840
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 2 cut(s) 107, 175
BstMAI GTCTC 2 cut(s) 94, 617
BstMWI GCNNNNNNNGC 4 cut(s) 170, 452, 690, 1228
BstNI CCWGG 2 cut(s) 21, 896
BstNSI RCATGY 1 cut(s) 1069
BstSCI CCNGG 3 cut(s) 19, 894, 1006
BstUI CGCG 1 cut(s) 840
BstV1I GCAGC 2 cut(s) 329, 464
BstX2I RGATCY 4 cut(s) 39, 118, 577, 754
BstXI CCANNNNNNTGG 2 cut(s) 211, 237
BstYI RGATCY 4 cut(s) 39, 118, 577, 754
BsuRI GGCC 3 cut(s) 135, 433, 1195
BtgI CCRYGG 2 cut(s) 286, 1187
BtsCI GGATG 3 cut(s) 230, 513, 756
BtsIMutI CAGTG 3 cut(s) 386, 790, 976
Cac8I GCNNGC 2 cut(s) 255, 964
CciI TCATGA 2 cut(s) 276, 1087
CfoI GCGC 2 cut(s) 107, 175
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 420, 432
Csp6I GTAC 2 cut(s) 159, 189
CspAI ACCGGT 1 cut(s) 259
CviQI GTAC 2 cut(s) 159, 189
DdeI CTNAG 4 cut(s) 115, 331, 621, 1290
EaeI YGGCCR 2 cut(s) 133, 1193
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco130I CCWWGG 3 cut(s) 286, 437, 1187
Eco47I GGWCC 1 cut(s) 420
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 19, 894
EcoT14I CCWWGG 3 cut(s) 286, 437, 1187
ErhI CCWWGG 3 cut(s) 286, 437, 1187
FaqI GGGAC 1 cut(s) 938
FauI CCCGC 1 cut(s) 865
FbaI TGATCA 4 cut(s) 466, 765, 787, 949
Fnu4HI GCNGC 3 cut(s) 136, 343, 453
FokI GGATG 3 cut(s) 217, 500, 763
Fsp4HI GCNGC 3 cut(s) 136, 343, 453
FspBI CTAG 3 cut(s) 254, 1209, 1259
GlaI GCGC 2 cut(s) 106, 174
GluI GCNGC 3 cut(s) 136, 343, 453
GsuI CTGGAG 2 cut(s) 949, 1014
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 3 cut(s) 135, 433, 1195
HapII CCGG 2 cut(s) 260, 1007
HhaI GCGC 2 cut(s) 107, 175
Hin6I GCGC 2 cut(s) 105, 173
HinP1I GCGC 2 cut(s) 105, 173
HinfI GANTC 2 cut(s) 641, 725
HpaII CCGG 2 cut(s) 260, 1007
HphI GGTGA 6 cut(s) 219, 641, 827, 833, 959, 996
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 6 cut(s) 118, 269, 551, 622, 954, 1291
Hpy188III TCNNGA 4 cut(s) 48, 277, 1079, 1088
Hpy8I GTNNAC 1 cut(s) 600
HpyAV CCTTC 4 cut(s) 484, 488, 932, 1233
HpyCH4III ACNGT 6 cut(s) 219, 604, 740, 773, 785, 1271
HpyCH4V TGCA 3 cut(s) 375, 540, 1107
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 452, 690, 1228
HpyF3I CTNAG 4 cut(s) 115, 331, 621, 1290
HspAI GCGC 2 cut(s) 105, 173
Ksp22I TGATCA 4 cut(s) 466, 765, 787, 949
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 1 cut(s) 959
Lsp1109I GCAGC 2 cut(s) 329, 464
LweI GCATC 1 cut(s) 975
MaeI CTAG 3 cut(s) 254, 1209, 1259
MaeIII GTNAC 2 cut(s) 779, 887
MbiI CCGCTC 1 cut(s) 872
MflI RGATCY 4 cut(s) 39, 118, 577, 754
MlsI TGGCCA 1 cut(s) 1195
MluCI AATT 6 cut(s) 247, 392, 812, 974, 1034, 1095
MluNI TGGCCA 1 cut(s) 1195
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 2 cut(s) 962, 1120
MnlI CCTC 6 cut(s) 417, 421, 426, 664, 892, 1248
Mox20I TGGCCA 1 cut(s) 1195
MroXI GAANNNNTTC 1 cut(s) 1160
MscI TGGCCA 1 cut(s) 1195
MseI TTAA 2 cut(s) 522, 849
MslI CAYNNNNRTG 1 cut(s) 1155
Msp20I TGGCCA 1 cut(s) 1195
MspCI CTTAAG 1 cut(s) 521
MspI CCGG 2 cut(s) 260, 1007
MspR9I CCNGG 3 cut(s) 21, 896, 1008
MvaI CCWGG 2 cut(s) 21, 896
MvnI CGCG 1 cut(s) 840
MwoI GCNNNNNNNGC 4 cut(s) 170, 452, 690, 1228
NciI CCSGG 1 cut(s) 1008
NcoI CCATGG 2 cut(s) 286, 1187
NheI GCTAGC 1 cut(s) 253
NlaIV GGNNCC 2 cut(s) 434, 756
NmeAIII GCCGAG 1 cut(s) 893
NspI RCATGY 1 cut(s) 1069
NspV TTCGAA 1 cut(s) 1114
PagI TCATGA 2 cut(s) 276, 1087
PciI ACATGT 1 cut(s) 1065
PciSI GCTCTTC 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 1160
PfeI GAWTC 1 cut(s) 725
PflMI CCANNNNNTGG 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 259
PkrI GCNGC 3 cut(s) 137, 344, 454
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
PscI ACATGT 1 cut(s) 1065
PsiI TTATAA 2 cut(s) 324, 795
Psp6I CCWGG 2 cut(s) 19, 894
PspGI CCWGG 2 cut(s) 19, 894
PspN4I GGNNCC 2 cut(s) 434, 756
PspPI GGNCC 2 cut(s) 420, 432
PsuI RGATCY 4 cut(s) 39, 118, 577, 754
RsaI GTAC 2 cut(s) 160, 190
RsaNI GTAC 2 cut(s) 159, 189
RseI CAYNNNNRTG 1 cut(s) 1155
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 2 cut(s) 522, 849
SatI GCNGC 3 cut(s) 136, 343, 453
Sau96I GGNCC 2 cut(s) 420, 432
ScaI AGTACT 1 cut(s) 160
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 3 cut(s) 21, 896, 1008
SetI ASST 6 cut(s) 319, 539, 667, 695, 964, 1021
SfaNI GCATC 1 cut(s) 975
SfuI TTCGAA 1 cut(s) 1114
SinI GGWCC 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 1155
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 6 cut(s) 247, 392, 812, 974, 1034, 1095
SsiI CCGC 3 cut(s) 136, 838, 872
SspI AATATT 1 cut(s) 7
SspMI CTAG 3 cut(s) 254, 1209, 1259
StyD4I CCNGG 3 cut(s) 19, 894, 1006
StyI CCWWGG 3 cut(s) 286, 437, 1187
TaaI ACNGT 6 cut(s) 219, 604, 740, 773, 785, 1271
TaqI TCGA 3 cut(s) 49, 644, 1114
TaqII GACCGA 1 cut(s) 408
TasI AATT 6 cut(s) 247, 392, 812, 974, 1034, 1095
TatI WGTACW 1 cut(s) 158
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 1 cut(s) 725
Tru1I TTAA 2 cut(s) 522, 849
Tru9I TTAA 2 cut(s) 522, 849
TscAI CASTG 3 cut(s) 393, 790, 976
TseI GCWGC 2 cut(s) 342, 452
TspDTI ATGAA 7 cut(s) 17, 118, 796, 1076, 1104, 1215, 1259
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 3 cut(s) 393, 790, 976
Van91I CCANNNNNTGG 1 cut(s) 99
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 420
XagI CCTNNNNNAGG 1 cut(s) 521
XapI RAATTY 3 cut(s) 392, 812, 1095
XceI RCATGY 1 cut(s) 1069
XcmI CCANNNNNNNNNTGG 1 cut(s) 1224
XmnI GAANNNNTTC 1 cut(s) 1160
XspI CTAG 3 cut(s) 254, 1209, 1259
ZrmI AGTACT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.