Rh6BG288600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017244
Physical Location & Seq
Forward (+)
51382842 .. 51383771
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG288600.1

Sequence Viewer

Length: 930 bp
ATGATCTGCCTGGCCTTGTATTGGTTGAGATTCTTTGTAGACTTCCTTGCTGTAAACTTGTTTTTCAGTCCAAGTGTGTCTCCAAGCGTTGGTGCTCTCATCTCAGATCCTTACTTTATCGGCCGCTTTATATGCCATCTCCGAAGTAGTGATATGGAAGCGCCACCAATAATCCGTACTCTGATAAACCGCAAAGGGGAGGAACTGTCATGGTCACCATCGTGGTGGTCGTCCAATTTGCTAGCACCGGTATTCAGAAGACTCATGAGTTTCCATGGATTGAAATATGAGCCAATTGTGAAAGCGACTTATAATGACTTGGTTTTGTGCCGCGAAGACGGGATGGACTTCTACTACATTTGCAATCCATCCACTGTGGAATGGGTTGCTCTTCCTTCCTCTCCTAGGTCCTATACTTGGCCACAGAGGAAAGCACCAGCAGCAATCATCTGCGATCGTAAGTACTATGATTACACGAAGGAAGGAAGAGGACACAACACCATCACGCTTAATGCTGATTACAGGTGCAAGGTTGTCAGAATACTTCCATTTGCAGGAGAGGATCCACATTATCATTTCTCCAGGTTCACTGTGGAGATCTTTTCTTCTGAGACTGGTGAGTGGATAGAGTCGGTCGTAGCTTCCCCTGTACCTTTGGATTTGACCACAAGCCGTATTAGCTTTGCTTACAATGGAATGTTGTATTGGTGGGATTCTTCAACCAACCGTTATCTTGGGATGGATCCTTTTATGATAAACAGTAATGGTGATCCTTATAAACTTCGTTTTATGGAATTTAATGATGAAGTTTTAGGTCTCCACGGCACCACTAACTGCCTTGGTGTGTGTGGAGGGGGTCTACGTATGTGTCACTACCGGGAGGAAGAGGATACTCTATGTTTGGGACTGGCAAGAAGAGCAAGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

309

Amino Acids

35.61

Weight (kDa)

6.39

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 99 - 242 1.9e-10 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017244)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19900 FvH4_2g19920
prunus_persica Prupe.1G510400_v2.0.a1
pyrus_communis pycom05g29490
rosa_chinensis RchiOBHm_Chr6g0285591
rosa_laevigata RLG00000012624
rosa_multiflora Rmu_co8292461.1_g000001 Rmu_sc0017770.1_g000007
rosa_roxburghii Rroxscaffold_7G00182920
rosa_rugosa Rorug06G0175900
rosa_samantha Rh6BG288600 Rh6BG288700 Rh6CG289800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 312, 777
AccB1I GGYRCC 1 cut(s) 824
AccB7I CCANNNNNTGG 1 cut(s) 89
AccI GTMKAC 2 cut(s) 39, 859
AccII CGCG 1 cut(s) 333
AciI CCGC 3 cut(s) 124, 190, 331
AclWI GGATC 6 cut(s) 101, 557, 570, 737, 750, 764
AcoI YGGCCR 2 cut(s) 121, 419
AcsI RAATTY 1 cut(s) 794
AfaI GTAC 3 cut(s) 178, 464, 651
AfiI CCNNNNNNNGG 6 cut(s) 21, 89, 196, 405, 417, 554
AgeI ACCGGT 1 cut(s) 247
AgsI TTSAA 2 cut(s) 283, 720
AjnI CCWGG 2 cut(s) 9, 581
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AleI CACNNNNGTG 1 cut(s) 220
AluBI AGCT 2 cut(s) 641, 681
AluI AGCT 2 cut(s) 641, 681
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 3 cut(s) 84, 605, 821
AlwI GGATC 6 cut(s) 101, 557, 570, 737, 750, 764
AoxI GGCC 3 cut(s) 12, 121, 419
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 794
AsiGI ACCGGT 1 cut(s) 247
AspA2I CCTAGG 1 cut(s) 404
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 408
AsuC2I CCSGG 1 cut(s) 878
AsuHPI GGTGA 3 cut(s) 207, 629, 779
AsuNHI GCTAGC 1 cut(s) 241
AvaII GGWCC 1 cut(s) 408
AvrII CCTAGG 1 cut(s) 404
BalI TGGCCA 1 cut(s) 421
BamHI GGATCC 2 cut(s) 562, 742
BanI GGYRCC 1 cut(s) 824
BbsI GAAGAC 2 cut(s) 265, 342
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 452
BccI CCATC 6 cut(s) 144, 226, 337, 376, 509, 733
BceAI ACGGC 2 cut(s) 657, 838
BciT130I CCWGG 2 cut(s) 11, 583
BciVI GTATCC 1 cut(s) 883
BcnI CCSGG 1 cut(s) 878
BcoDI GTCTC 3 cut(s) 84, 605, 821
BfaI CTAG 2 cut(s) 242, 405
BfoI RGCGCY 1 cut(s) 164
BfuI GTATCC 1 cut(s) 883
BglII AGATCT 1 cut(s) 597
BisI GCNGC 3 cut(s) 124, 331, 441
BlnI CCTAGG 1 cut(s) 404
BlsI GCNGC 3 cut(s) 125, 332, 442
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 3 cut(s) 11, 583, 878
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 3 cut(s) 564, 744, 826
BmrFI CCNGG 3 cut(s) 11, 583, 878
BmtI GCTAGC 1 cut(s) 245
BpiI GAAGAC 2 cut(s) 265, 342
BpmI CTGGAG 1 cut(s) 565
BpuMI CCSGG 1 cut(s) 878
BsaAI YACGTR 1 cut(s) 863
BsaI GGTCTC 1 cut(s) 821
BsaJI CCNNGG 4 cut(s) 274, 404, 820, 838
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 6 cut(s) 21, 89, 196, 405, 417, 554
Bse118I RCCGGY 1 cut(s) 247
Bse1I ACTGG 2 cut(s) 619, 912
BseBI CCWGG 2 cut(s) 11, 583
BseDI CCNNGG 4 cut(s) 274, 404, 820, 838
BseGI GGATG 3 cut(s) 348, 368, 744
BseLI CCNNNNNNNGG 6 cut(s) 21, 89, 196, 405, 417, 554
BseMII CTCAG 2 cut(s) 117, 600
BseNI ACTGG 2 cut(s) 619, 912
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 452
Bsh1236I CGCG 1 cut(s) 333
Bsh1285I CGRYCG 3 cut(s) 124, 457, 636
BshFI GGCC 3 cut(s) 14, 123, 421
BshNI GGYRCC 1 cut(s) 824
BshTI ACCGGT 1 cut(s) 247
BsiEI CGRYCG 3 cut(s) 124, 457, 636
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 2 cut(s) 248, 877
BslFI GGGAC 1 cut(s) 918
BslI CCNNNNNNNGG 6 cut(s) 21, 89, 196, 405, 417, 554
BsmAI GTCTC 3 cut(s) 84, 605, 821
BsmFI GGGAC 1 cut(s) 918
BsnI GGCC 3 cut(s) 14, 123, 421
Bso31I GGTCTC 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 7 cut(s) 3, 106, 454, 562, 597, 742, 769
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 3 cut(s) 124, 190, 331
BspANI GGCC 3 cut(s) 14, 123, 421
BspCNI CTCAG 2 cut(s) 116, 601
BspFNI CGCG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 3 cut(s) 564, 744, 826
BspOI GCTAGC 1 cut(s) 245
BspPI GGATC 6 cut(s) 101, 557, 570, 737, 750, 764
BspQI GCTCTTC 2 cut(s) 396, 910
BspT107I GGYRCC 1 cut(s) 824
BspTNI GGTCTC 1 cut(s) 821
BsrFI RCCGGY 1 cut(s) 247
BsrI ACTGG 2 cut(s) 619, 912
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 4 cut(s) 274, 404, 820, 838
BssMI GATC 7 cut(s) 3, 106, 454, 562, 597, 742, 769
BssT1I CCWWGG 3 cut(s) 274, 404, 838
Bst2UI CCWGG 2 cut(s) 11, 583
Bst4CI ACNGT 5 cut(s) 207, 376, 592, 728, 761
Bst6I CTCTTC 4 cut(s) 396, 481, 879, 910
BstBAI YACGTR 1 cut(s) 863
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 103, 609
BstDSI CCRYGG 2 cut(s) 274, 820
BstEII GGTNACC 1 cut(s) 213
BstENI CCTNNNNNAGG 1 cut(s) 403
BstF5I GGATG 3 cut(s) 348, 368, 744
BstFNI CGCG 1 cut(s) 333
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 7 cut(s) 6, 109, 457, 565, 600, 745, 772
BstMAI GTCTC 3 cut(s) 84, 605, 821
BstMBI GATC 7 cut(s) 3, 106, 454, 562, 597, 742, 769
BstMCI CGRYCG 3 cut(s) 124, 457, 636
BstMWI GCNNNNNNNGC 4 cut(s) 132, 440, 678, 917
BstNI CCWGG 2 cut(s) 11, 583
BstPI GGTNACC 1 cut(s) 213
BstSCI CCNGG 3 cut(s) 9, 581, 876
BstSNI TACGTA 1 cut(s) 863
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 2 cut(s) 265, 342
BstX2I RGATCY 4 cut(s) 106, 562, 597, 742
BstXI CCANNNNNNTGG 1 cut(s) 225
BstYI RGATCY 4 cut(s) 106, 562, 597, 742
BstZI CGGCCG 1 cut(s) 121
BsuI GTATCC 1 cut(s) 883
BsuRI GGCC 3 cut(s) 14, 123, 421
BtgI CCRYGG 2 cut(s) 274, 820
BtsCI GGATG 3 cut(s) 348, 368, 744
BtsIMutI CAGTG 2 cut(s) 372, 588
Cac8I GCNNGC 1 cut(s) 243
CciI TCATGA 1 cut(s) 264
CfoI GCGC 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 408
Csp6I GTAC 3 cut(s) 177, 463, 650
CspAI ACCGGT 1 cut(s) 247
CviAII CATG 3 cut(s) 210, 265, 275
CviJI RGCY 7 cut(s) 14, 123, 292, 421, 641, 672, 681
CviKI_1 RGCY 7 cut(s) 14, 123, 292, 421, 641, 672, 681
CviQI GTAC 3 cut(s) 177, 463, 650
DdeI CTNAG 2 cut(s) 103, 609
DpnI GATC 7 cut(s) 5, 108, 456, 564, 599, 744, 771
DpnII GATC 7 cut(s) 3, 106, 454, 562, 597, 742, 769
EaeI YGGCCR 2 cut(s) 121, 419
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 4 cut(s) 396, 481, 879, 910
EarI CTCTTC 4 cut(s) 396, 481, 879, 910
EclXI CGGCCG 1 cut(s) 121
Eco105I TACGTA 1 cut(s) 863
Eco130I CCWWGG 3 cut(s) 274, 404, 838
Eco31I GGTCTC 1 cut(s) 821
Eco47I GGWCC 1 cut(s) 408
Eco52I CGGCCG 1 cut(s) 121
Eco91I GGTNACC 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 408
EcoO65I GGTNACC 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 9, 581
EcoT14I CCWWGG 3 cut(s) 274, 404, 838
ErhI CCWWGG 3 cut(s) 274, 404, 838
FaeI CATG 3 cut(s) 213, 268, 278
FaqI GGGAC 1 cut(s) 918
FatI CATG 3 cut(s) 209, 264, 274
FblI GTMKAC 2 cut(s) 39, 859
Fnu4HI GCNGC 3 cut(s) 124, 331, 441
FokI GGATG 3 cut(s) 355, 355, 751
Fsp4HI GCNGC 3 cut(s) 124, 331, 441
FspBI CTAG 2 cut(s) 242, 405
GlaI GCGC 1 cut(s) 162
GluI GCNGC 3 cut(s) 124, 331, 441
GsuI CTGGAG 1 cut(s) 565
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 3 cut(s) 14, 123, 421
HapII CCGG 2 cut(s) 248, 877
HhaI GCGC 1 cut(s) 163
Hin1II CATG 3 cut(s) 213, 268, 278
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 4 cut(s) 30, 261, 629, 713
HpaII CCGG 2 cut(s) 248, 877
HphI GGTGA 3 cut(s) 207, 629, 779
Hpy166II GTNNAC 4 cut(s) 40, 55, 588, 860
Hpy188I TCNGA 6 cut(s) 106, 143, 183, 257, 539, 610
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 4 cut(s) 40, 55, 588, 860
HpyAV CCTTC 3 cut(s) 405, 472, 476
HpyCH4III ACNGT 5 cut(s) 207, 376, 592, 728, 761
HpyCH4IV ACGT 1 cut(s) 862
HpyCH4V TGCA 3 cut(s) 363, 528, 554
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 440, 678, 917
HpyF3I CTNAG 2 cut(s) 103, 609
HpySE526I ACGT 1 cut(s) 862
Hsp92II CATG 3 cut(s) 213, 268, 278
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 7 cut(s) 3, 106, 454, 562, 597, 742, 769
LguI GCTCTTC 2 cut(s) 396, 910
Lsp1109I GCAGC 1 cut(s) 452
MaeI CTAG 2 cut(s) 242, 405
MaeII ACGT 1 cut(s) 862
MaeIII GTNAC 2 cut(s) 213, 869
MalI GATC 7 cut(s) 5, 108, 456, 564, 599, 744, 771
MboI GATC 7 cut(s) 3, 106, 454, 562, 597, 742, 769
MboII GAAGA 8 cut(s) 270, 347, 383, 498, 597, 708, 896, 927
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 4 cut(s) 106, 562, 597, 742
MhlI GDGCHC 1 cut(s) 97
MlsI TGGCCA 1 cut(s) 421
MluCI AATT 3 cut(s) 235, 294, 794
MluNI TGGCCA 1 cut(s) 421
MlyI GAGTC 2 cut(s) 255, 638
MnlI CCTC 8 cut(s) 193, 409, 420, 482, 553, 845, 874, 880
Mox20I TGGCCA 1 cut(s) 421
MscI TGGCCA 1 cut(s) 421
MseI TTAA 2 cut(s) 510, 798
MslI CAYNNNNRTG 2 cut(s) 220, 223
Msp20I TGGCCA 1 cut(s) 421
MspI CCGG 2 cut(s) 248, 877
MspR9I CCNGG 3 cut(s) 11, 583, 878
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 2 cut(s) 11, 583
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 4 cut(s) 132, 440, 678, 917
NciI CCSGG 1 cut(s) 878
NcoI CCATGG 1 cut(s) 274
NdeII GATC 7 cut(s) 3, 106, 454, 562, 597, 742, 769
NheI GCTAGC 1 cut(s) 241
NlaIII CATG 3 cut(s) 213, 268, 278
NlaIV GGNNCC 3 cut(s) 564, 744, 826
NmuCI GTSAC 2 cut(s) 213, 869
OliI CACNNNNGTG 1 cut(s) 220
PagI TCATGA 1 cut(s) 264
PciSI GCTCTTC 2 cut(s) 396, 910
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PfeI GAWTC 2 cut(s) 30, 713
PflMI CCANNNNNTGG 1 cut(s) 89
PinAI ACCGGT 1 cut(s) 247
PkrI GCNGC 3 cut(s) 125, 332, 442
Ple19I CGATCG 1 cut(s) 457
PleI GAGTC 2 cut(s) 255, 637
PpsI GAGTC 2 cut(s) 255, 637
Ppu21I YACGTR 1 cut(s) 863
PpuMI RGGWCCY 1 cut(s) 408
PsiI TTATAA 2 cut(s) 312, 777
Psp5II RGGWCCY 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 9, 581
PspEI GGTNACC 1 cut(s) 213
PspGI CCWGG 2 cut(s) 9, 581
PspN4I GGNNCC 3 cut(s) 564, 744, 826
PspPI GGNCC 1 cut(s) 408
PspPPI RGGWCCY 1 cut(s) 408
PsuI RGATCY 4 cut(s) 106, 562, 597, 742
PvuI CGATCG 1 cut(s) 457
RsaI GTAC 3 cut(s) 178, 464, 651
RsaNI GTAC 3 cut(s) 177, 463, 650
RseI CAYNNNNRTG 2 cut(s) 220, 223
SapI GCTCTTC 2 cut(s) 396, 910
SaqAI TTAA 2 cut(s) 510, 798
SatI GCNGC 3 cut(s) 124, 331, 441
Sau3AI GATC 7 cut(s) 3, 106, 454, 562, 597, 742, 769
Sau96I GGNCC 1 cut(s) 408
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 2 cut(s) 255, 638
ScrFI CCNGG 3 cut(s) 11, 583, 878
SduI GDGCHC 1 cut(s) 97
SetI ASST 9 cut(s) 410, 527, 534, 587, 643, 655, 683, 817, 865
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 220, 223
SnaBI TACGTA 1 cut(s) 863
Sse9I AATT 3 cut(s) 235, 294, 794
SsiI CCGC 3 cut(s) 124, 190, 331
SspMI CTAG 2 cut(s) 242, 405
StyD4I CCNGG 3 cut(s) 9, 581, 876
StyI CCWWGG 3 cut(s) 274, 404, 838
TaaI ACNGT 5 cut(s) 207, 376, 592, 728, 761
TaiI ACGT 1 cut(s) 865
TaqII GACCGA 1 cut(s) 622
TasI AATT 3 cut(s) 235, 294, 794
TatI WGTACW 1 cut(s) 462
TauI GCSGC 2 cut(s) 126, 333
TfiI GAWTC 2 cut(s) 30, 713
Tru1I TTAA 2 cut(s) 510, 798
Tru9I TTAA 2 cut(s) 510, 798
TscAI CASTG 2 cut(s) 379, 595
TseFI GTSAC 2 cut(s) 213, 869
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 2 cut(s) 213, 869
TspDTI ATGAA 1 cut(s) 819
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 2 cut(s) 379, 595
Van91I CCANNNNNTGG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 403
XapI RAATTY 1 cut(s) 794
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XmaJI CCTAGG 1 cut(s) 404
XmiI GTMKAC 2 cut(s) 39, 859
XspI CTAG 2 cut(s) 242, 405
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.