pycom05g29490

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
29892132 .. 29892380
249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g29490.1

Sequence Viewer

Length: 249 bp
ATGTGCAACATTCGTGCAAGAAAGGCAAGGAAGACTAGTAGGATCACTCCGGTTAATTATGCTGCAATTAGTAACTCCGTGATGGCTGTCTTCCCATACATGCTTCCATGGTGGCCGACACCAGTTACTAGACTCAAACCAGGCTCTAGCACTTCAAATCATGTTGCGGAAGCAGGTAAGAAGAGGAAAGCCAATGACGAAAGCACAAAGTGGACAACAAGCAAAGCACAGCAGCAGATTTGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.21

Weight (kDa)

10.56

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017244)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 113
AdeI CACNNNGTG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 156
AhlI ACTAGT 1 cut(s) 35
AjnI CCWGG 1 cut(s) 139
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 2 cut(s) 62, 232
BbsI GAAGAC 2 cut(s) 38, 82
BbvI GCAGC 2 cut(s) 49, 244
BccI CCATC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 141
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 3 cut(s) 36, 129, 147
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 2 cut(s) 63, 233
BlsI GCNGC 2 cut(s) 64, 234
Bme1390I CCNGG 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 38, 82
BsaJI CCNNGG 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 122
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 49, 244
BshFI GGCC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 50
BsnI GGCC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 42
Bsp19I CCATGG 1 cut(s) 107
BspACI CCGC 1 cut(s) 167
BspANI GGCC 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 176
BstDSI CCRYGG 1 cut(s) 107
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 49, 244
BstV2I GAAGAC 2 cut(s) 38, 82
BsuRI GGCC 1 cut(s) 115
BtgI CCRYGG 1 cut(s) 107
BveI ACCTGC 1 cut(s) 164
CviAII CATG 3 cut(s) 100, 108, 161
CviJI RGCY 4 cut(s) 86, 115, 144, 191
CviKI_1 RGCY 4 cut(s) 86, 115, 144, 191
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
DraIII CACNNNGTG 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 3 cut(s) 103, 111, 164
FaiI YATR 6 cut(s) 60, 97, 101, 109, 162, 247
FatI CATG 3 cut(s) 99, 107, 160
Fnu4HI GCNGC 2 cut(s) 63, 233
Fsp4HI GCNGC 2 cut(s) 63, 233
FspBI CTAG 3 cut(s) 36, 129, 147
GluI GCNGC 2 cut(s) 63, 233
HaeIII GGCC 1 cut(s) 115
HapII CCGG 1 cut(s) 50
Hin1II CATG 3 cut(s) 103, 111, 164
HinfI GANTC 1 cut(s) 132
HpaII CCGG 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 213
Hpy8I GTNNAC 1 cut(s) 213
HpyCH4V TGCA 3 cut(s) 6, 17, 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 3 cut(s) 103, 111, 164
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 5 cut(s) 63, 126, 135, 153, 159
Lsp1109I GCAGC 2 cut(s) 49, 244
MaeI CTAG 3 cut(s) 36, 129, 147
MaeIII GTNAC 2 cut(s) 71, 124
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 3 cut(s) 43, 82, 193
MluCI AATT 2 cut(s) 55, 66
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 1 cut(s) 177
MseI TTAA 1 cut(s) 54
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 23
NcoI CCATGG 1 cut(s) 107
NdeII GATC 1 cut(s) 42
NlaIII CATG 3 cut(s) 103, 111, 164
NspI RCATGY 1 cut(s) 103
PkrI GCNGC 2 cut(s) 64, 234
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 2 cut(s) 63, 233
Sau3AI GATC 1 cut(s) 42
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 1 cut(s) 141
SetI ASST 1 cut(s) 178
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 2 cut(s) 55, 66
SsiI CCGC 1 cut(s) 167
SspMI CTAG 3 cut(s) 36, 129, 147
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 107
TasI AATT 2 cut(s) 55, 66
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseI GCWGC 2 cut(s) 62, 232
TspGWI ACGGA 1 cut(s) 67
XceI RCATGY 1 cut(s) 103
XspI CTAG 3 cut(s) 36, 129, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.