Rmu_co8292461.1_g000001

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8292461.1
OG0017244
Physical Location & Seq
Reverse (-)
2 .. 874
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8292461.1_g000001.1.cds

Sequence Viewer

Length: 873 bp
cttccttcctctcctaggtcctatacttggccacagaggaaagcaccagcagcaatcatctgcgatcgtaagtactatgattacacgaaggaaggaagaggacacaacaccatcacgcttaatgctgattacaggtgcaaggttgtcagaatacttccatttgcaggagacgatccacattatcatttctccaggttcactgtggagatcttttcttctgagactaatgagtggatagagtcggtcgtagcttcccctgtacctttggatttgaccacaagccgtattagctttgcttacaatggaatgttgtattggtgggattcttcaaccaaccgttatcttggcatggatccttttatgataaacagtaatggtaatggtgatccttataaacttcgttttatggaatttaatgatgaagttttaggtctccacggcaccactaactgccttggtgtgtgtggagggggtctacgtatgtgtcactaccgggaggaagaggatactctatatgtttgggactggaaagaagagcacgattgtgatcagaatggagctggcagcagtgaattgtgttggaaacagactggagtttattcactgggactgagaatgcctactattgcggatttgtttgcttttgatccaaataatgatgacttgttgtatctcgatgttgatgaagaaatttgcctgtgcaacattcgaacaggaaatttgtcaaagctcgttggaatggatcacgttaatgttaatggctacttctttccattagtgctcccatggtggccgacaccagttcctagactactaaagccttcatggctctcaaagttgatgaagaagttgaggatagtagctaactattta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

291

Amino Acids

33.52

Weight (kDa)

5.39

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017244)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19900 FvH4_2g19920
prunus_persica Prupe.1G510400_v2.0.a1
pyrus_communis pycom05g29490
rosa_chinensis RchiOBHm_Chr6g0285591
rosa_laevigata RLG00000012624
rosa_multiflora Rmu_co8292461.1_g000001 Rmu_sc0017770.1_g000007
rosa_roxburghii Rroxscaffold_7G00182920
rosa_rugosa Rorug06G0175900
rosa_samantha Rh6BG288600 Rh6BG288700 Rh6CG289800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
AccB1I GGYRCC 1 cut(s) 440
AccI GTMKAC 1 cut(s) 475
AciI CCGC 1 cut(s) 629
AclWI GGATC 6 cut(s) 167, 347, 360, 380, 641, 750
AcoI YGGCCR 2 cut(s) 29, 791
AcsI RAATTY 3 cut(s) 410, 690, 718
AfaI GTAC 2 cut(s) 74, 261
AfiI CCNNNNNNNGG 3 cut(s) 15, 27, 164
AgsI TTSAA 1 cut(s) 330
AjnI CCWGG 1 cut(s) 191
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AleI CACNNNNGTG 1 cut(s) 543
AluBI AGCT 5 cut(s) 251, 291, 560, 730, 863
AluI AGCT 5 cut(s) 251, 291, 560, 730, 863
Alw21I GWGCWC 2 cut(s) 540, 783
Alw26I GTCTC 3 cut(s) 162, 215, 437
AlwI GGATC 6 cut(s) 167, 347, 360, 380, 641, 750
AoxI GGCC 2 cut(s) 29, 791
ApeKI GCWGC 2 cut(s) 50, 564
ApoI RAATTY 3 cut(s) 410, 690, 718
AspA2I CCTAGG 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 709
AvaII GGWCC 1 cut(s) 18
AvrII CCTAGG 1 cut(s) 14
BalI TGGCCA 1 cut(s) 31
BamHI GGATCC 1 cut(s) 352
BanI GGYRCC 1 cut(s) 440
Bbv12I GWGCWC 2 cut(s) 540, 783
BbvI GCAGC 2 cut(s) 62, 576
BccI CCATC 1 cut(s) 119
BceAI ACGGC 2 cut(s) 267, 454
BciT130I CCWGG 1 cut(s) 193
BciVI GTATCC 1 cut(s) 499
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 3 cut(s) 162, 215, 437
BfaI CTAG 2 cut(s) 15, 807
BfuI GTATCC 1 cut(s) 499
BglI GCCNNNNNGGC 1 cut(s) 826
BglII AGATCT 1 cut(s) 207
BisI GCNGC 2 cut(s) 51, 565
BlnI CCTAGG 1 cut(s) 14
BlsI GCNGC 2 cut(s) 52, 566
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 2 cut(s) 193, 494
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 2 cut(s) 354, 442
BmrFI CCNGG 2 cut(s) 193, 494
BmrI ACTGGG 1 cut(s) 614
BmuI ACTGGG 1 cut(s) 614
BpmI CTGGAG 2 cut(s) 175, 612
Bpu14I TTCGAA 1 cut(s) 709
BpuMI CCSGG 1 cut(s) 494
BsaAI YACGTR 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 4 cut(s) 14, 436, 454, 785
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 27, 164
Bse1I ACTGG 4 cut(s) 530, 595, 609, 800
Bse8I GATNNNNATC 1 cut(s) 546
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 4 cut(s) 14, 436, 454, 785
BseJI GATNNNNATC 1 cut(s) 546
BseLI CCNNNNNNNGG 3 cut(s) 15, 27, 164
BseMII CTCAG 2 cut(s) 210, 602
BseNI ACTGG 4 cut(s) 530, 595, 609, 800
BseXI GCAGC 2 cut(s) 62, 576
Bsh1285I CGRYCG 2 cut(s) 67, 246
BshFI GGCC 2 cut(s) 31, 793
BshNI GGYRCC 1 cut(s) 440
BsiEI CGRYCG 2 cut(s) 67, 246
BsiHKAI GWGCWC 2 cut(s) 540, 783
BsiSI CCGG 1 cut(s) 493
BslFI GGGAC 2 cut(s) 536, 621
BslI CCNNNNNNNGG 3 cut(s) 15, 27, 164
BsmAI GTCTC 3 cut(s) 162, 215, 437
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 2 cut(s) 536, 621
BsmI GAATGC 1 cut(s) 621
BsnI GGCC 2 cut(s) 31, 793
Bso31I GGTCTC 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 709
Bsp1286I GDGCHC 2 cut(s) 540, 783
Bsp143I GATC 8 cut(s) 64, 172, 207, 352, 385, 547, 646, 742
Bsp19I CCATGG 1 cut(s) 785
BspACI CCGC 1 cut(s) 629
BspANI GGCC 2 cut(s) 31, 793
BspCNI CTCAG 2 cut(s) 211, 603
BspLI GGNNCC 2 cut(s) 354, 442
BspPI GGATC 6 cut(s) 167, 347, 360, 380, 641, 750
BspQI GCTCTTC 1 cut(s) 528
BspT104I TTCGAA 1 cut(s) 709
BspT107I GGYRCC 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 437
BsrI ACTGG 4 cut(s) 530, 595, 609, 800
BssECI CCNNGG 4 cut(s) 14, 436, 454, 785
BssMI GATC 8 cut(s) 64, 172, 207, 352, 385, 547, 646, 742
BssT1I CCWWGG 3 cut(s) 14, 454, 785
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 3 cut(s) 202, 338, 371
Bst6I CTCTTC 3 cut(s) 91, 495, 528
BstBAI YACGTR 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 709
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 2 cut(s) 219, 611
BstDSI CCRYGG 2 cut(s) 436, 785
BstENI CCTNNNNNAGG 1 cut(s) 13
BstKTI GATC 8 cut(s) 67, 175, 210, 355, 388, 550, 649, 745
BstMAI GTCTC 3 cut(s) 162, 215, 437
BstMBI GATC 8 cut(s) 64, 172, 207, 352, 385, 547, 646, 742
BstMCI CGRYCG 2 cut(s) 67, 246
BstMWI GCNNNNNNNGC 3 cut(s) 50, 288, 826
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 191, 492
BstSNI TACGTA 1 cut(s) 479
BstV1I GCAGC 2 cut(s) 62, 576
BstX2I RGATCY 2 cut(s) 207, 352
BstYI RGATCY 2 cut(s) 207, 352
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 2 cut(s) 31, 793
BtgI CCRYGG 2 cut(s) 436, 785
BtsI GCAGTG 1 cut(s) 574
BtsIMutI CAGTG 3 cut(s) 198, 574, 602
Cac8I GCNNGC 1 cut(s) 562
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 2 cut(s) 73, 260
CviAII CATG 3 cut(s) 349, 786, 825
CviQI GTAC 2 cut(s) 73, 260
DdeI CTNAG 2 cut(s) 219, 611
DpnI GATC 8 cut(s) 66, 174, 209, 354, 387, 549, 648, 744
DpnII GATC 8 cut(s) 64, 172, 207, 352, 385, 547, 646, 742
EaeI YGGCCR 2 cut(s) 29, 791
Eam1104I CTCTTC 3 cut(s) 91, 495, 528
EarI CTCTTC 3 cut(s) 91, 495, 528
Eco105I TACGTA 1 cut(s) 479
Eco130I CCWWGG 3 cut(s) 14, 454, 785
Eco31I GGTCTC 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 3 cut(s) 14, 454, 785
ErhI CCWWGG 3 cut(s) 14, 454, 785
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 3 cut(s) 352, 789, 828
FaqI GGGAC 2 cut(s) 536, 621
FatI CATG 3 cut(s) 348, 785, 824
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 51, 565
Fsp4HI GCNGC 2 cut(s) 51, 565
FspBI CTAG 2 cut(s) 15, 807
GluI GCNGC 2 cut(s) 51, 565
GsuI CTGGAG 2 cut(s) 175, 612
HaeIII GGCC 2 cut(s) 31, 793
HapII CCGG 1 cut(s) 493
Hin1II CATG 3 cut(s) 352, 789, 828
HinfI GANTC 2 cut(s) 239, 323
HpaII CCGG 1 cut(s) 493
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 2 cut(s) 198, 476
Hpy188I TCNGA 3 cut(s) 149, 220, 552
Hpy188III TCNNGA 1 cut(s) 674
Hpy8I GTNNAC 2 cut(s) 198, 476
HpyAV CCTTC 4 cut(s) 15, 82, 86, 831
HpyCH4III ACNGT 3 cut(s) 202, 338, 371
HpyCH4IV ACGT 2 cut(s) 478, 747
HpyCH4V TGCA 3 cut(s) 138, 164, 702
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 288, 826
HpyF3I CTNAG 2 cut(s) 219, 611
HpySE526I ACGT 2 cut(s) 478, 747
Hsp92II CATG 3 cut(s) 352, 789, 828
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 8 cut(s) 64, 172, 207, 352, 385, 547, 646, 742
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 2 cut(s) 557, 786
Lsp1109I GCAGC 2 cut(s) 62, 576
MaeI CTAG 2 cut(s) 15, 807
MaeII ACGT 2 cut(s) 478, 747
MaeIII GTNAC 1 cut(s) 485
MalI GATC 8 cut(s) 66, 174, 209, 354, 387, 549, 648, 744
MboI GATC 8 cut(s) 64, 172, 207, 352, 385, 547, 646, 742
MboII GAAGA 7 cut(s) 108, 207, 318, 512, 545, 698, 856
MflI RGATCY 2 cut(s) 207, 352
MhlI GDGCHC 2 cut(s) 540, 783
MlsI TGGCCA 1 cut(s) 31
MluCI AATT 4 cut(s) 410, 572, 690, 718
MluNI TGGCCA 1 cut(s) 31
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 560, 715
MnlI CCTC 7 cut(s) 19, 30, 92, 461, 490, 496, 846
Mox20I TGGCCA 1 cut(s) 31
MscI TGGCCA 1 cut(s) 31
MseI TTAA 4 cut(s) 120, 414, 750, 756
MslI CAYNNNNRTG 2 cut(s) 543, 750
Msp20I TGGCCA 1 cut(s) 31
MspI CCGG 1 cut(s) 493
MspR9I CCNGG 2 cut(s) 193, 494
Mva1269I GAATGC 1 cut(s) 621
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 3 cut(s) 50, 288, 826
NciI CCSGG 1 cut(s) 494
NcoI CCATGG 1 cut(s) 785
NdeII GATC 8 cut(s) 64, 172, 207, 352, 385, 547, 646, 742
NlaIII CATG 3 cut(s) 352, 789, 828
NlaIV GGNNCC 2 cut(s) 354, 442
NmuCI GTSAC 1 cut(s) 485
NspV TTCGAA 1 cut(s) 709
OliI CACNNNNGTG 1 cut(s) 543
PciSI GCTCTTC 1 cut(s) 528
PctI GAATGC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 2 cut(s) 52, 566
Ple19I CGATCG 1 cut(s) 67
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Ppu21I YACGTR 1 cut(s) 479
PpuMI RGGWCCY 1 cut(s) 18
PsiI TTATAA 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 354, 442
PspPI GGNCC 1 cut(s) 18
PspPPI RGGWCCY 1 cut(s) 18
PsuI RGATCY 2 cut(s) 207, 352
PvuI CGATCG 1 cut(s) 67
RsaI GTAC 2 cut(s) 74, 261
RsaNI GTAC 2 cut(s) 73, 260
RseI CAYNNNNRTG 2 cut(s) 543, 750
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 4 cut(s) 120, 414, 750, 756
SatI GCNGC 2 cut(s) 51, 565
Sau3AI GATC 8 cut(s) 64, 172, 207, 352, 385, 547, 646, 742
Sau96I GGNCC 1 cut(s) 18
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 193, 494
SduI GDGCHC 2 cut(s) 540, 783
SfuI TTCGAA 1 cut(s) 709
SinI GGWCC 1 cut(s) 18
SmiMI CAYNNNNRTG 2 cut(s) 543, 750
SnaBI TACGTA 1 cut(s) 479
Sse9I AATT 4 cut(s) 410, 572, 690, 718
SsiI CCGC 1 cut(s) 629
SspMI CTAG 2 cut(s) 15, 807
StyD4I CCNGG 2 cut(s) 191, 492
StyI CCWWGG 3 cut(s) 14, 454, 785
TaaI ACNGT 3 cut(s) 202, 338, 371
TaiI ACGT 2 cut(s) 481, 750
TaqI TCGA 2 cut(s) 675, 709
TaqII GACCGA 1 cut(s) 232
TasI AATT 4 cut(s) 410, 572, 690, 718
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 4 cut(s) 120, 414, 750, 756
Tru9I TTAA 4 cut(s) 120, 414, 750, 756
TscAI CASTG 3 cut(s) 205, 574, 609
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 2 cut(s) 50, 564
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 4 cut(s) 435, 699, 813, 857
TspRI CASTG 3 cut(s) 205, 574, 609
VpaK11BI GGWCC 1 cut(s) 18
XagI CCTNNNNNAGG 1 cut(s) 13
XapI RAATTY 3 cut(s) 410, 690, 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmaJI CCTAGG 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 475
XspI CTAG 2 cut(s) 15, 807
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.