Prupe.1G510400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017244
Physical Location & Seq
Reverse (-)
42035323 .. 42036759
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G510400.1

Sequence Viewer

Length: 516 bp
ATGCAATATGCTGAACTTCCTCCCACCCCAAGTCAATGTCACAAGAGTGTGCGGGTAGGAATCATCTGCAATGTTGTTCCTGACTATAAATTTGAGGAAGATGATTGGAAAGGAAACAACATCCATCTTAATGTTGAGTGTAGGTTCACGGTTGTGAGAATTCTTCCTCCTGTTGAATATGCAAATGATGAGAAGAAAGCTGCTGCTGGCAAAAATTTGTGTTTGAGTAAACGCGGGGTTTATTCCTTCGATCCTGAAATGATTCCGATCAACGCGTATTGCGTAATGATTGCTTTTGATCCAAATAGTAAGGATATTTTTTATCTGCATGTGCGGAGAGATATTATCAAGTGGAACATTCGCACAGGAGAGTGGTCAAAGTTATTTGAACACTGGGCAACACATCGTTACTATTACACAGTTGTGCTCCCGTGGTGGCCGACGCCAGTTCCTAGACTAGCGCAGCAGCATGCGCATCGATCCGTGGCGGAGGAAGTAGCAGCAGCTAGTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

172

Amino Acids

19.93

Weight (kDa)

8.25

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017244)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19900 FvH4_2g19920
prunus_persica Prupe.1G510400_v2.0.a1
pyrus_communis pycom05g29490
rosa_chinensis RchiOBHm_Chr6g0285591
rosa_laevigata RLG00000012624
rosa_multiflora Rmu_co8292461.1_g000001 Rmu_sc0017770.1_g000007
rosa_roxburghii Rroxscaffold_7G00182920
rosa_rugosa Rorug06G0175900
rosa_samantha Rh6BG288600 Rh6BG288700 Rh6CG289800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 474
AccII CGCG 2 cut(s) 234, 275
AciI CCGC 4 cut(s) 52, 234, 334, 488
AclWI GGATC 3 cut(s) 245, 293, 474
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 3 cut(s) 89, 159, 214
AcyI GRCGYC 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 2 cut(s) 176, 389
AleI CACNNNNGTG 3 cut(s) 45, 152, 422
AluBI AGCT 2 cut(s) 200, 506
AluI AGCT 2 cut(s) 200, 506
Alw21I GWGCWC 1 cut(s) 429
AlwI GGATC 3 cut(s) 245, 293, 474
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 6 cut(s) 200, 203, 463, 466, 500, 503
ApoI RAATTY 3 cut(s) 89, 159, 214
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 2 cut(s) 463, 475
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 5 cut(s) 187, 190, 475, 478, 512
BccI CCATC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BfaI CTAG 3 cut(s) 453, 458, 507
BisI GCNGC 6 cut(s) 201, 204, 464, 467, 501, 504
BlsI GCNGC 6 cut(s) 202, 205, 465, 468, 502, 505
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 1 cut(s) 484
BmuI ACTGGG 1 cut(s) 403
Bsa29I ATCGAT 1 cut(s) 478
BsaBI GATNNNNATC 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 431, 483
Bse1I ACTGG 2 cut(s) 398, 446
Bse3DI GCAATG 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 266
BseCI ATCGAT 1 cut(s) 478
BseDI CCNNGG 2 cut(s) 431, 483
BseGI GGATG 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 266
BseMI GCAATG 1 cut(s) 76
BseNI ACTGG 2 cut(s) 398, 446
BseXI GCAGC 5 cut(s) 187, 190, 475, 478, 512
Bsh1236I CGCG 2 cut(s) 234, 275
BshFI GGCC 1 cut(s) 439
BshVI ATCGAT 1 cut(s) 478
BsiHKAI GWGCWC 1 cut(s) 429
BsnI GGCC 1 cut(s) 439
Bsp1286I GDGCHC 1 cut(s) 429
Bsp143I GATC 4 cut(s) 250, 267, 298, 479
BspACI CCGC 4 cut(s) 52, 234, 334, 488
BspANI GGCC 1 cut(s) 439
BspDI ATCGAT 1 cut(s) 478
BspFNI CGCG 2 cut(s) 234, 275
BspPI GGATC 3 cut(s) 245, 293, 474
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 2 cut(s) 398, 446
BssECI CCNNGG 2 cut(s) 431, 483
BssMI GATC 4 cut(s) 250, 267, 298, 479
BssNI GRCGYC 1 cut(s) 443
Bst4CI ACNGT 2 cut(s) 151, 421
BstACI GRCGYC 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 208, 471
BstDSI CCRYGG 2 cut(s) 431, 483
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 2 cut(s) 234, 275
BstHHI GCGC 2 cut(s) 463, 475
BstKTI GATC 4 cut(s) 253, 270, 301, 482
BstMBI GATC 4 cut(s) 250, 267, 298, 479
BstMWI GCNNNNNNNGC 1 cut(s) 472
BstNSI RCATGY 2 cut(s) 332, 473
BstUI CGCG 2 cut(s) 234, 275
BstV1I GCAGC 5 cut(s) 187, 190, 475, 478, 512
Bsu15I ATCGAT 1 cut(s) 478
BsuRI GGCC 1 cut(s) 439
BsuTUI ATCGAT 1 cut(s) 478
BtgI CCRYGG 2 cut(s) 431, 483
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 391
Cac8I GCNNGC 2 cut(s) 208, 471
CfoI GCGC 2 cut(s) 463, 475
ClaI ATCGAT 1 cut(s) 478
CseI GACGC 1 cut(s) 451
CviAII CATG 2 cut(s) 329, 470
CviJI RGCY 3 cut(s) 200, 439, 506
CviKI_1 RGCY 3 cut(s) 200, 439, 506
DpnI GATC 4 cut(s) 252, 269, 300, 481
DpnII GATC 4 cut(s) 250, 267, 298, 479
EaeI YGGCCR 1 cut(s) 437
EciI GGCGGA 1 cut(s) 503
EcoRI GAATTC 1 cut(s) 159
FaeI CATG 2 cut(s) 332, 473
FaiI YATR 5 cut(s) 9, 87, 180, 330, 471
FatI CATG 2 cut(s) 328, 469
FauI CCCGC 2 cut(s) 45, 227
Fnu4HI GCNGC 6 cut(s) 201, 204, 464, 467, 501, 504
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 6 cut(s) 201, 204, 464, 467, 501, 504
FspAI RTGCGCAY 1 cut(s) 474
FspBI CTAG 3 cut(s) 453, 458, 507
FspI TGCGCA 1 cut(s) 474
GlaI GCGC 2 cut(s) 462, 474
GluI GCNGC 6 cut(s) 201, 204, 464, 467, 501, 504
HaeIII GGCC 1 cut(s) 439
HgaI GACGC 1 cut(s) 451
HhaI GCGC 2 cut(s) 463, 475
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 2 cut(s) 332, 473
Hin6I GCGC 2 cut(s) 461, 473
HinP1I GCGC 2 cut(s) 461, 473
HinfI GANTC 2 cut(s) 60, 262
Hpy166II GTNNAC 2 cut(s) 147, 230
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 2 cut(s) 80, 254
Hpy8I GTNNAC 2 cut(s) 147, 230
Hpy99I CGWCG 1 cut(s) 445
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 2 cut(s) 151, 421
HpyCH4V TGCA 4 cut(s) 4, 69, 182, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 472
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 2 cut(s) 332, 473
HspAI GCGC 2 cut(s) 461, 473
Kzo9I GATC 4 cut(s) 250, 267, 298, 479
LmnI GCTCC 1 cut(s) 432
LpnPI CCDG 7 cut(s) 93, 183, 192, 267, 351, 379, 459
Lsp1109I GCAGC 5 cut(s) 187, 190, 475, 478, 512
LweI GCATC 1 cut(s) 484
MaeI CTAG 3 cut(s) 453, 458, 507
MaeIII GTNAC 2 cut(s) 38, 407
MalI GATC 4 cut(s) 252, 269, 300, 481
MboI GATC 4 cut(s) 250, 267, 298, 479
MboII GAAGA 3 cut(s) 110, 155, 205
MhlI GDGCHC 1 cut(s) 429
MluCI AATT 3 cut(s) 89, 159, 214
MluI ACGCGT 1 cut(s) 273
MnlI CCTC 4 cut(s) 30, 88, 177, 484
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 4 cut(s) 45, 129, 152, 422
MvnI CGCG 2 cut(s) 234, 275
MwoI GCNNNNNNNGC 1 cut(s) 472
NdeII GATC 4 cut(s) 250, 267, 298, 479
NlaIII CATG 2 cut(s) 332, 473
NmuCI GTSAC 1 cut(s) 38
NsbI TGCGCA 1 cut(s) 474
NspI RCATGY 2 cut(s) 332, 473
OliI CACNNNNGTG 3 cut(s) 45, 152, 422
PaeI GCATGC 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 60, 262
PkrI GCNGC 6 cut(s) 202, 205, 465, 468, 502, 505
RseI CAYNNNNRTG 4 cut(s) 45, 129, 152, 422
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 6 cut(s) 201, 204, 464, 467, 501, 504
Sau3AI GATC 4 cut(s) 250, 267, 298, 479
SduI GDGCHC 1 cut(s) 429
SetI ASST 3 cut(s) 146, 202, 508
SfaNI GCATC 1 cut(s) 484
SmiMI CAYNNNNRTG 4 cut(s) 45, 129, 152, 422
SphI GCATGC 1 cut(s) 473
Sse9I AATT 3 cut(s) 89, 159, 214
SsiI CCGC 4 cut(s) 52, 234, 334, 488
SspMI CTAG 3 cut(s) 453, 458, 507
TaaI ACNGT 2 cut(s) 151, 421
TaqI TCGA 2 cut(s) 249, 478
TasI AATT 3 cut(s) 89, 159, 214
TfiI GAWTC 2 cut(s) 60, 262
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 398
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 6 cut(s) 200, 203, 463, 466, 500, 503
Tsp45I GTSAC 1 cut(s) 38
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 1 cut(s) 398
XapI RAATTY 3 cut(s) 89, 159, 214
XceI RCATGY 2 cut(s) 332, 473
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 3 cut(s) 453, 458, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.