FvH4_2g20250

Ammonium transporter 1 member

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
17030331 .. 17031809
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20250.t1

Sequence Viewer

Length: 1479 bp
ATGGCAGCCATCACTTGCTCCGCCACCGACCTCCAGCCCCTCCTCGGCCCCAACGCCACCGCGGCGGCAGAATACATCTGCAGCCGCTTTGGTGCCATGTCGAACAAGTTTGTCGACACGGGTTATGCAATTGACAACACGTACCTTCTCTTCTCTGCGTACCTTGTTTTTTCCATGCAGCTCGGCTTTGCTATGCTCTGCGCCGGCTCCGTTCGTGCCAAAAACACCATGAATATTATGCTCACCAACGTCCTCGACGCTGCCACCGGCGGCATCTTCTACTACCTTTTCGGGTTTGCCTTCGCCTATGGAACTCCCTCCAATGGCTTCATTGGCAAGCAGTTCTTTGGCCTCAGCCATTTTCCTTCCCCCTCTTTCGACTACGGCTTCTTCCTCTACCAATGGGCCTTTGCCATTGCGGCTGCCGGAATCACTAGTGGCTCCATAGCCGAACGGACTCAGTTCGTGGCCTATTTGATATACTCATCTTTCTTGACAGGGTTTGTGTACCCTATTGTGTCACATTGGTTTTGGTCTTCCGACGGTTGGGCTAGCCCTGCTCGTGCTGAGAATCTCTTGTTTGGTTCCGGTGTGATTGACTTTGCAGGCTCCGGGGTTGTGCACTTGGTCGGAGGCATTGCCGGATTGTGGGGTGCCCTGATTGAGGGGCCTAGGATCGGCAGGTTTGATCATGAAGGCCGGTCCGTGACAATGCGTGGACATAGTGGCACATTGGTTGTGTTGGGGACTTTTTTGTTGTGGTTTGGTTGGTATGGTTTCAATGCAGGTTCTTTTCTCAACATATTGAAGGTTTACGGTGATAGTGGATCTTCCTATGGACAATGGAGCGCTGTGGGAAGGACTGCCGTGACAACCACCTTGGCCGGATGCGCAGCAGCATTGACTACTCTATTCGGAAAGCGCATGCTCTCCGGGCATTGGAATGTCACCGATGTTTGCAATGGCTTGCTTGGCGGGTTTGCAGCTATCACATCTGGCTGTTCTGTGGTTGATCCTTGGGCAGCAATTATTTGTGGGATTGTGGCTGCTTGGGTTTTGATAGGTTGTAACAAGCTTGCCGAGAAGTTGAAGTTTGATGACCCTTTGGAGGCTGCACAACTTCATGGAGGGTGTGGGACTTGGGGGATCATATTCACGGCCTTGTTTGCCAAGAAGGCTTATGTGAATGAGGTCTATCCAGGGCACCCGGAGAGGCCATTTGGATTGTTTATAGGCGGCGGTGCCAAGCTGTTGGCTGCGCATTTGGTGCAGATTGTGGCGGTAGCTGCGTTTGTGAGTGTAACAATGGGGACATTGTTTTTCTTGCTGCACAAGTTGGAGCTGTTGAGGATTTCATCAGACGACGAAATGGCAGGAATGGATGTGACAAGTCATGGGGGATTGGCTTATGTCTATACTGATGGAGATGACATGAATTCTGGATATATGGTTTCTAGGGGTGGTCCTCCAAATGTTTGA

Protein Analysis

493

Amino Acids

52.36

Weight (kDa)

6.1

Isoelectric Point (pI)

20.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 48 - 470 6.3e-128 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28700
fragaria_vesca FvH4_2g20250
malus_domestica MD05G1186200.v1.1
prunus_persica Prupe.1G573000_v2.0.a1 Prupe.8G213000_v2.0.a1
pyrus_communis pycom05g17070
rosa_chinensis RchiOBHm_Chr6g0286021
rosa_laevigata RLG00000012589
rosa_roxburghii Rroxscaffold_7G00182520
rosa_rugosa Rorug06G0178300
rosa_samantha Rh6AG290300 Rh6CG293300 Rh6DG285400
rosa_wichuraiana Rw6G025020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 892, 1260
Acc36I ACCTGC 2 cut(s) 672, 776
AccB1I GGYRCC 4 cut(s) 92, 653, 1203, 1241
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 62
AclWI GGATC 4 cut(s) 683, 835, 1007, 1154
AcoI YGGCCR 1 cut(s) 882
AcsI RAATTY 1 cut(s) 1435
AfaI GTAC 3 cut(s) 143, 161, 509
AfeI AGCGCT 1 cut(s) 850
AfiI CCNNNNNNNGG 8 cut(s) 44, 323, 546, 648, 664, 677, 939, 1108
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 3 cut(s) 781, 808, 1090
AhlI ACTAGT 1 cut(s) 434
AjnI CCWGG 1 cut(s) 1198
AluBI AGCT 6 cut(s) 181, 986, 1075, 1249, 1286, 1342
AluI AGCT 6 cut(s) 181, 986, 1075, 1249, 1286, 1342
Alw21I GWGCWC 1 cut(s) 624
Alw44I GTGCAC 1 cut(s) 620
AlwI GGATC 4 cut(s) 683, 835, 1007, 1154
Aor51HI AGCGCT 1 cut(s) 850
AoxI GGCC 9 cut(s) 46, 349, 405, 468, 668, 697, 882, 1158, 1214
ApaLI GTGCAC 1 cut(s) 620
ApoI RAATTY 1 cut(s) 1435
AspA2I CCTAGG 1 cut(s) 671
AspLEI GCGC 5 cut(s) 203, 851, 893, 924, 1261
AspS9I GGNCC 5 cut(s) 47, 405, 668, 702, 1463
AsuC2I CCSGG 3 cut(s) 613, 934, 1208
AsuHPI GGTGA 3 cut(s) 235, 830, 940
AsuNHI GCTAGC 1 cut(s) 551
AvaII GGWCC 2 cut(s) 702, 1463
AvrII CCTAGG 1 cut(s) 671
BaeGI GKGCMC 3 cut(s) 624, 658, 1206
BanI GGYRCC 4 cut(s) 92, 653, 1203, 1241
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BauI CACGAG 1 cut(s) 561
BbsI GAAGAC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 624
BbvCI CCTCAGC 1 cut(s) 353
BccI CCATC 2 cut(s) 17, 1415
BceAI ACGGC 3 cut(s) 400, 851, 1173
BciT130I CCWGG 1 cut(s) 1200
BclI TGATCA 1 cut(s) 688
BcnI CCSGG 3 cut(s) 613, 934, 1208
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 4 cut(s) 435, 552, 672, 1455
BfmI CTRYAG 1 cut(s) 79
BfoI RGCGCY 1 cut(s) 852
BfuAI ACCTGC 2 cut(s) 672, 776
BglI GCCNNNNNGGC 3 cut(s) 62, 419, 1175
BlnI CCTAGG 1 cut(s) 671
Bme1390I CCNGG 4 cut(s) 613, 934, 1200, 1208
Bme18I GGWCC 2 cut(s) 702, 1463
BmgT120I GGNCC 5 cut(s) 47, 405, 668, 702, 1463
BmrFI CCNGG 4 cut(s) 613, 934, 1200, 1208
BmsI GCATC 2 cut(s) 282, 878
BmtI GCTAGC 1 cut(s) 555
BpiI GAAGAC 1 cut(s) 528
BpmI CTGGAG 1 cut(s) 17
Bpu10I CCTNAGC 1 cut(s) 353
BpuMI CCSGG 3 cut(s) 613, 934, 1208
BsaAI YACGTR 1 cut(s) 141
BsaJI CCNNGG 7 cut(s) 43, 60, 612, 671, 879, 1016, 1199
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 8 cut(s) 44, 323, 546, 648, 664, 677, 939, 1108
Bse118I RCCGGY 3 cut(s) 203, 266, 699
Bse3DI GCAATG 3 cut(s) 414, 636, 967
BseBI CCWGG 1 cut(s) 1200
BseDI CCNNGG 7 cut(s) 43, 60, 612, 671, 879, 1016, 1199
BseGI GGATG 2 cut(s) 893, 1387
BseLI CCNNNNNNNGG 8 cut(s) 44, 323, 546, 648, 664, 677, 939, 1108
BseMI GCAATG 3 cut(s) 414, 636, 967
BseMII CTCAG 3 cut(s) 367, 473, 558
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 3 cut(s) 624, 658, 1206
BsgI GTGCAG 3 cut(s) 1098, 1289, 1313
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 9 cut(s) 48, 351, 407, 470, 670, 699, 884, 1160, 1216
BshNI GGYRCC 4 cut(s) 92, 653, 1203, 1241
BsiHKAI GWGCWC 1 cut(s) 624
BslFI GGGAC 3 cut(s) 760, 1150, 1324
BslI CCNNNNNNNGG 8 cut(s) 44, 323, 546, 648, 664, 677, 939, 1108
BsmFI GGGAC 3 cut(s) 760, 1150, 1324
BsnI GGCC 9 cut(s) 48, 351, 407, 470, 670, 699, 884, 1160, 1216
Bsp1286I GDGCHC 3 cut(s) 624, 658, 1206
Bsp143I GATC 5 cut(s) 675, 688, 827, 1012, 1146
BspANI GGCC 9 cut(s) 48, 351, 407, 470, 670, 699, 884, 1160, 1216
BspCNI CTCAG 3 cut(s) 366, 472, 559
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 691
BspMAI CTGCAG 1 cut(s) 83
BspMI ACCTGC 2 cut(s) 672, 776
BspOI GCTAGC 1 cut(s) 555
BspPI GGATC 4 cut(s) 683, 835, 1007, 1154
BspT107I GGYRCC 4 cut(s) 92, 653, 1203, 1241
BsrDI GCAATG 3 cut(s) 414, 636, 967
BsrFI RCCGGY 3 cut(s) 203, 266, 699
BssAI RCCGGY 3 cut(s) 203, 266, 699
BssECI CCNNGG 7 cut(s) 43, 60, 612, 671, 879, 1016, 1199
BssMI GATC 5 cut(s) 675, 688, 827, 1012, 1146
BssSI CACGAG 1 cut(s) 561
BssT1I CCWWGG 3 cut(s) 671, 879, 1016
Bst2BI CACGAG 1 cut(s) 561
Bst2UI CCWGG 1 cut(s) 1200
Bst4CI ACNGT 2 cut(s) 545, 818
Bst6I CTCTTC 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 1267
BstBAI YACGTR 1 cut(s) 141
BstC8I GCNNGC 7 cut(s) 205, 338, 553, 607, 926, 968, 1077
BstDEI CTNAG 3 cut(s) 353, 459, 567
BstDSI CCRYGG 1 cut(s) 60
BstENI CCTNNNNNAGG 1 cut(s) 662
BstF5I GGATG 2 cut(s) 893, 1387
BstFNI CGCG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 852
BstHHI GCGC 5 cut(s) 203, 851, 893, 924, 1261
BstKTI GATC 5 cut(s) 678, 691, 830, 1015, 1149
BstMBI GATC 5 cut(s) 675, 688, 827, 1012, 1146
BstNI CCWGG 1 cut(s) 1200
BstNSI RCATGY 1 cut(s) 928
BstSCI CCNGG 4 cut(s) 611, 932, 1198, 1206
BstSFI CTRYAG 1 cut(s) 79
BstSLI GKGCMC 3 cut(s) 624, 658, 1206
BstUI CGCG 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 528
BstX2I RGATCY 1 cut(s) 827
BstXI CCANNNNNNTGG 1 cut(s) 1252
BstYI RGATCY 1 cut(s) 827
BsuRI GGCC 9 cut(s) 48, 351, 407, 470, 670, 699, 884, 1160, 1216
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 893, 1387
BveI ACCTGC 2 cut(s) 672, 776
Cac8I GCNNGC 7 cut(s) 205, 338, 553, 607, 926, 968, 1077
CciI TCATGA 1 cut(s) 691
CfoI GCGC 5 cut(s) 203, 851, 893, 924, 1261
Cfr10I RCCGGY 3 cut(s) 203, 266, 699
Cfr13I GGNCC 5 cut(s) 47, 405, 668, 702, 1463
Cfr42I CCGCGG 1 cut(s) 63
CpoI CGGWCCG 1 cut(s) 702
CseI GACGC 1 cut(s) 266
Csp6I GTAC 3 cut(s) 142, 160, 508
CspI CGGWCCG 1 cut(s) 702
CviAII CATG 8 cut(s) 97, 175, 229, 692, 925, 1124, 1394, 1432
CviQI GTAC 3 cut(s) 142, 160, 508
DdeI CTNAG 3 cut(s) 353, 459, 567
DpnI GATC 5 cut(s) 677, 690, 829, 1014, 1148
DpnII GATC 5 cut(s) 675, 688, 827, 1012, 1146
EaeI YGGCCR 1 cut(s) 882
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EciI GGCGGA 1 cut(s) 10
Eco130I CCWWGG 3 cut(s) 671, 879, 1016
Eco47I GGWCC 2 cut(s) 702, 1463
Eco47III AGCGCT 1 cut(s) 850
EcoNI CCTNNNNNAGG 1 cut(s) 662
EcoO109I RGGNCCY 1 cut(s) 668
EcoRI GAATTC 1 cut(s) 1435
EcoRII CCWGG 1 cut(s) 1198
EcoT14I CCWWGG 3 cut(s) 671, 879, 1016
ErhI CCWWGG 3 cut(s) 671, 879, 1016
FaeI CATG 8 cut(s) 100, 178, 232, 695, 928, 1127, 1397, 1435
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 3 cut(s) 760, 1150, 1324
FatI CATG 8 cut(s) 96, 174, 228, 691, 924, 1123, 1393, 1431
FauI CCCGC 1 cut(s) 968
FbaI TGATCA 1 cut(s) 688
FblI GTMKAC 1 cut(s) 114
FokI GGATG 2 cut(s) 900, 1394
FspBI CTAG 4 cut(s) 435, 552, 672, 1455
FspI TGCGCA 2 cut(s) 892, 1260
GlaI GCGC 5 cut(s) 202, 850, 892, 923, 1260
GsuI CTGGAG 1 cut(s) 17
HaeII RGCGCY 1 cut(s) 852
HaeIII GGCC 9 cut(s) 48, 351, 407, 470, 670, 699, 884, 1160, 1216
HgaI GACGC 1 cut(s) 266
HhaI GCGC 5 cut(s) 203, 851, 893, 924, 1261
Hin1II CATG 8 cut(s) 100, 178, 232, 695, 928, 1127, 1397, 1435
Hin6I GCGC 5 cut(s) 201, 849, 891, 922, 1259
HinP1I GCGC 5 cut(s) 201, 849, 891, 922, 1259
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 1073
HinfI GANTC 3 cut(s) 429, 457, 571
HphI GGTGA 3 cut(s) 235, 830, 940
Hpy166II GTNNAC 5 cut(s) 115, 508, 622, 719, 814
Hpy188I TCNGA 4 cut(s) 541, 632, 917, 1360
Hpy188III TCNNGA 3 cut(s) 493, 692, 1440
Hpy8I GTNNAC 5 cut(s) 115, 508, 622, 719, 814
Hpy99I CGWCG 3 cut(s) 260, 545, 1367
HpyAV CCTTC 7 cut(s) 155, 310, 375, 689, 802, 852, 1168
HpyCH4III ACNGT 2 cut(s) 545, 818
HpyCH4IV ACGT 2 cut(s) 140, 249
HpyF3I CTNAG 3 cut(s) 353, 459, 567
HpySE526I ACGT 2 cut(s) 140, 249
Hsp92II CATG 8 cut(s) 100, 178, 232, 695, 928, 1127, 1397, 1435
HspAI GCGC 5 cut(s) 201, 849, 891, 922, 1259
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 688
KspI CCGCGG 1 cut(s) 63
Kzo9I GATC 5 cut(s) 675, 688, 827, 1012, 1146
LmnI GCTCC 6 cut(s) 23, 212, 446, 614, 846, 1339
LweI GCATC 2 cut(s) 282, 878
MaeI CTAG 4 cut(s) 435, 552, 672, 1455
MaeII ACGT 2 cut(s) 140, 249
MaeIII GTNAC 7 cut(s) 519, 706, 868, 946, 1067, 1300, 1384
MalI GATC 5 cut(s) 677, 690, 829, 1014, 1148
MboI GATC 5 cut(s) 675, 688, 827, 1012, 1146
MboII GAAGA 5 cut(s) 142, 268, 382, 528, 822
MfeI CAATTG 1 cut(s) 129
MflI RGATCY 1 cut(s) 827
MhlI GDGCHC 3 cut(s) 624, 658, 1206
MluCI AATT 3 cut(s) 129, 1026, 1435
MlyI GAGTC 1 cut(s) 451
MmeI TCCRAC 3 cut(s) 564, 610, 1317
MroNI GCCGGC 1 cut(s) 203
MslI CAYNNNNRTG 1 cut(s) 942
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 4 cut(s) 613, 934, 1200, 1208
MunI CAATTG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 1200
MvnI CGCG 1 cut(s) 62
NaeI GCCGGC 1 cut(s) 205
NciI CCSGG 3 cut(s) 613, 934, 1208
NdeII GATC 5 cut(s) 675, 688, 827, 1012, 1146
NgoMIV GCCGGC 1 cut(s) 203
NheI GCTAGC 1 cut(s) 551
NlaIII CATG 8 cut(s) 100, 178, 232, 695, 928, 1127, 1397, 1435
NmeAIII GCCGAG 3 cut(s) 24, 162, 1105
NmuCI GTSAC 5 cut(s) 519, 706, 868, 946, 1384
NsbI TGCGCA 2 cut(s) 892, 1260
NspI RCATGY 1 cut(s) 928
PaeI GCATGC 1 cut(s) 928
PagI TCATGA 1 cut(s) 691
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 429, 571
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
Ppu21I YACGTR 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 1198
PspGI CCWGG 1 cut(s) 1198
PspPI GGNCC 5 cut(s) 47, 405, 668, 702, 1463
PstI CTGCAG 1 cut(s) 83
PsuI RGATCY 1 cut(s) 827
RsaI GTAC 3 cut(s) 143, 161, 509
RsaNI GTAC 3 cut(s) 142, 160, 508
RseI CAYNNNNRTG 1 cut(s) 942
Rsr2I CGGWCCG 1 cut(s) 702
RsrII CGGWCCG 1 cut(s) 702
SacII CCGCGG 1 cut(s) 63
SalI GTCGAC 1 cut(s) 113
Sau3AI GATC 5 cut(s) 675, 688, 827, 1012, 1146
Sau96I GGNCC 5 cut(s) 47, 405, 668, 702, 1463
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 4 cut(s) 613, 934, 1200, 1208
SduI GDGCHC 3 cut(s) 624, 658, 1206
SfaNI GCATC 2 cut(s) 282, 878
SfcI CTRYAG 1 cut(s) 79
Sfr303I CCGCGG 1 cut(s) 63
SgrAI CRCCGGYG 1 cut(s) 266
SgrBI CCGCGG 1 cut(s) 63
SinI GGWCC 2 cut(s) 702, 1463
SmiMI CAYNNNNRTG 1 cut(s) 942
SpeI ACTAGT 1 cut(s) 434
SphI GCATGC 1 cut(s) 928
Sse9I AATT 3 cut(s) 129, 1026, 1435
SspI AATATT 1 cut(s) 235
SspMI CTAG 4 cut(s) 435, 552, 672, 1455
StyD4I CCNGG 4 cut(s) 611, 932, 1198, 1206
StyI CCWWGG 3 cut(s) 671, 879, 1016
TaaI ACNGT 2 cut(s) 545, 818
TaiI ACGT 2 cut(s) 143, 252
TaqI TCGA 4 cut(s) 101, 114, 255, 378
TasI AATT 3 cut(s) 129, 1026, 1435
TauI GCSGC 6 cut(s) 65, 68, 87, 273, 422, 1239
TfiI GAWTC 2 cut(s) 429, 571
TseFI GTSAC 5 cut(s) 519, 706, 868, 946, 1384
Tsp45I GTSAC 5 cut(s) 519, 706, 868, 946, 1384
TspDTI ATGAA 6 cut(s) 245, 319, 708, 1112, 1344, 1448
TspGWI ACGGA 3 cut(s) 199, 469, 694
VneI GTGCAC 1 cut(s) 620
VpaK11BI GGWCC 2 cut(s) 702, 1463
XagI CCTNNNNNAGG 1 cut(s) 662
XapI RAATTY 1 cut(s) 1435
XceI RCATGY 1 cut(s) 928
XmaJI CCTAGG 1 cut(s) 671
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 4 cut(s) 435, 552, 672, 1455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.