FvH4_2g23740

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013615
Physical Location & Seq
Reverse (-)
19426797 .. 19431040
4244 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23740.t2

Sequence Viewer

Length: 1122 bp
ATGTCAGTTGCACCAGTTGAGAACATGTCATCTTTGAACACAGACCTTTTCTACGATATATTGAAACGTCTTGATGGACCAACTTTGGCTACTGCAGCATGTACATGTGCAGCATTCTGTTCCATCTCAAAAGAAGAGAGGTTATGGGAAGATGTGTGCTCTTCTATGTGGCCTTCAACTAATAGGGAAGATGTCAAGAGTTTAATATCATCCATTGGTGGGTTCAGAAAGTTCTATGCTGATTGTTTTCCCCTTATTGTAAACAAGGAAGTTACTGACTACCAGTGGAACGACTACCTTGAGTACCCCGAAGAATGGACCGAAGCTGAATACTACGGTGACATGGATGAGTTCGAAAGTATTTCACCATCGGATTTTGTTTCAATTGTGGACATCCGTTACAAGGATAAAATAATCTGCTCAAAAGTTCTTTGGGGGATTCCCAACGCGAACGGCTTCAATGGTTGGTTTTACAACTGCCCATTTCGGATTGATCTTCTTACTTATGCAGCCAGAGATGACGATGATGACGGTGAAGCTTTCCTTTCTGTTGCTAACGGCCTGCCACCGATTGCATCTATGGAGACAGAAAGGAAAGATGGAAAGTTATGGCGGGGGCTTCGTGATGGTCTCCGACTTAGTTGGATTGTTGTAAATAGAAAAATGAAGCAAGCTGCTAATCTTGCTAGCTGGTGCCCAATTGGTGGTCAAAGGCATTGGCCAACAGACAAGGACTTTGTGATTCGCTTCGGATCCATTCTTCCTGCAAGAGACATCCTTCCCTGTCAAGTAGTGGAATGCATCCTCAGCATGAAGTTCCGAGTGATTTGTACAGAGGGAGAAGGCGCTGAGACAACCCTCAAGTTAACAGAATTGAGCATGCAGTTAGAGGACATGGAAGGTTCTCATGTCAATGGAAGAAACAGTTTGCTTATTCTCAAGGAAGCACTGAGCTGCCGCCGCAGCAAAAACTACAGCGAAGTTCTTGAGTCGTGCAATTTGTACTCGAAAGTACAGAACGAGCTCAAAGAGGAAAAGATGAGAAACGAAAGCAGGTTAGATAGACTTTGTATCTTGAGTGGCATTGCTGCATTTGTATCCTTCTGTTACTATGTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

374

Amino Acids

42.57

Weight (kDa)

4.85

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1044
AccB1I GGYRCC 1 cut(s) 693
AccB7I CCANNNNNTGG 1 cut(s) 704
AccII CGCG 1 cut(s) 449
AciI CCGC 3 cut(s) 613, 958, 961
AclWI GGATC 2 cut(s) 747, 760
AcoI YGGCCR 1 cut(s) 719
AfaI GTAC 5 cut(s) 103, 305, 832, 1004, 1014
AfiI CCNNNNNNNGG 4 cut(s) 219, 315, 403, 704
AflIII ACRYGT 2 cut(s) 24, 104
AgsI TTSAA 5 cut(s) 37, 64, 177, 384, 460
AluBI AGCT 6 cut(s) 326, 539, 674, 690, 954, 1024
AluI AGCT 6 cut(s) 326, 539, 674, 690, 954, 1024
Alw21I GWGCWC 2 cut(s) 161, 1026
Alw26I GTCTC 4 cut(s) 578, 635, 765, 845
AlwI GGATC 2 cut(s) 747, 760
AoxI GGCC 3 cut(s) 170, 559, 719
ApeKI GCWGC 7 cut(s) 95, 110, 509, 674, 954, 963, 1088
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
Asp700I GAANNNNTTC 1 cut(s) 455
AspLEI GCGC 1 cut(s) 848
AspS9I GGNCC 2 cut(s) 77, 318
AsuHPI GGTGA 3 cut(s) 350, 357, 545
AsuII TTCGAA 1 cut(s) 354
AsuNHI GCTAGC 1 cut(s) 686
AvaII GGWCC 2 cut(s) 77, 318
BaeGI GKGCMC 1 cut(s) 698
BalI TGGCCA 1 cut(s) 721
BamHI GGATCC 1 cut(s) 752
BanI GGYRCC 1 cut(s) 693
BanII GRGCYC 1 cut(s) 1026
Bbv12I GWGCWC 2 cut(s) 161, 1026
BbvCI CCTCAGC 1 cut(s) 806
BbvI GCAGC 7 cut(s) 107, 122, 521, 661, 941, 975, 1075
BccI CCATC 5 cut(s) 68, 131, 376, 593, 620
BceAI ACGGC 2 cut(s) 469, 574
BciVI GTATCC 1 cut(s) 1108
BcoDI GTCTC 4 cut(s) 578, 635, 765, 845
BfaI CTAG 1 cut(s) 687
BfmI CTRYAG 2 cut(s) 93, 973
BfoI RGCGCY 1 cut(s) 849
BfuAI ACCTGC 1 cut(s) 1044
BfuI GTATCC 1 cut(s) 1108
BisI GCNGC 9 cut(s) 96, 111, 510, 675, 955, 958, 961, 964, 1089
BlsI GCNGC 9 cut(s) 97, 112, 511, 676, 956, 959, 962, 965, 1090
Bme18I GGWCC 2 cut(s) 77, 318
BmgT120I GGNCC 2 cut(s) 77, 318
BmiI GGNNCC 2 cut(s) 695, 754
BmsI GCATC 2 cut(s) 584, 810
BmtI GCTAGC 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 806
Bpu14I TTCGAA 1 cut(s) 354
BpuEI CTTGAG 5 cut(s) 320, 845, 923, 1007, 1096
BsaI GGTCTC 1 cut(s) 635
Bsc4I CCNNNNNNNGG 4 cut(s) 219, 315, 403, 704
Bse1I ACTGG 2 cut(s) 14, 283
Bse3DI GCAATG 1 cut(s) 1083
BseGI GGATG 5 cut(s) 209, 352, 393, 774, 801
BseLI CCNNNNNNNGG 4 cut(s) 219, 315, 403, 704
BseMI GCAATG 1 cut(s) 1083
BseMII CTCAG 3 cut(s) 820, 840, 941
BseNI ACTGG 2 cut(s) 14, 283
BseSI GKGCMC 1 cut(s) 698
BseXI GCAGC 7 cut(s) 107, 122, 521, 661, 941, 975, 1075
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 449
BshFI GGCC 3 cut(s) 172, 561, 721
BshNI GGYRCC 1 cut(s) 693
BsiHKAI GWGCWC 2 cut(s) 161, 1026
BslI CCNNNNNNNGG 4 cut(s) 219, 315, 403, 704
BsmAI GTCTC 4 cut(s) 578, 635, 765, 845
BsmI GAATGC 2 cut(s) 113, 803
BsnI GGCC 3 cut(s) 172, 561, 721
Bso31I GGTCTC 1 cut(s) 635
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 3 cut(s) 161, 698, 1026
Bsp1407I TGTACA 2 cut(s) 101, 830
Bsp143I GATC 2 cut(s) 493, 752
BspACI CCGC 3 cut(s) 613, 958, 961
BspANI GGCC 3 cut(s) 172, 561, 721
BspCNI CTCAG 3 cut(s) 819, 841, 942
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 2 cut(s) 695, 754
BspMAI CTGCAG 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 1044
BspOI GCTAGC 1 cut(s) 690
BspPI GGATC 2 cut(s) 747, 760
BspQI GCTCTTC 1 cut(s) 166
BspT104I TTCGAA 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 693
BspTNI GGTCTC 1 cut(s) 635
BsrDI GCAATG 1 cut(s) 1083
BsrGI TGTACA 2 cut(s) 101, 830
BsrI ACTGG 2 cut(s) 14, 283
BssMI GATC 2 cut(s) 493, 752
Bst4CI ACNGT 3 cut(s) 338, 533, 926
Bst6I CTCTTC 2 cut(s) 129, 166
BstAUI TGTACA 2 cut(s) 101, 830
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 4 cut(s) 563, 672, 688, 881
BstDEI CTNAG 4 cut(s) 638, 806, 849, 950
BstF5I GGATG 5 cut(s) 209, 352, 393, 774, 801
BstFNI CGCG 1 cut(s) 449
BstH2I RGCGCY 1 cut(s) 849
BstHHI GCGC 1 cut(s) 848
BstKTI GATC 2 cut(s) 496, 755
BstMAI GTCTC 4 cut(s) 578, 635, 765, 845
BstMBI GATC 2 cut(s) 493, 752
BstMWI GCNNNNNNNGC 5 cut(s) 95, 683, 807, 960, 963
BstNSI RCATGY 4 cut(s) 28, 102, 108, 883
BstSFI CTRYAG 2 cut(s) 93, 973
BstSLI GKGCMC 1 cut(s) 698
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 7 cut(s) 107, 122, 521, 661, 941, 975, 1075
BstX2I RGATCY 1 cut(s) 752
BstYI RGATCY 1 cut(s) 752
BsuI GTATCC 1 cut(s) 1108
BsuRI GGCC 3 cut(s) 172, 561, 721
BtsCI GGATG 5 cut(s) 209, 352, 393, 774, 801
BtsIMutI CAGTG 2 cut(s) 290, 947
BveI ACCTGC 1 cut(s) 1044
Cac8I GCNNGC 4 cut(s) 563, 672, 688, 881
CfoI GCGC 1 cut(s) 848
Cfr13I GGNCC 2 cut(s) 77, 318
Csp6I GTAC 5 cut(s) 102, 304, 831, 1003, 1013
CviAII CATG 8 cut(s) 25, 99, 105, 343, 811, 880, 895, 908
CviQI GTAC 5 cut(s) 102, 304, 831, 1003, 1013
DdeI CTNAG 4 cut(s) 638, 806, 849, 950
DpnI GATC 2 cut(s) 495, 754
DpnII GATC 2 cut(s) 493, 752
EaeI YGGCCR 1 cut(s) 719
Eam1104I CTCTTC 2 cut(s) 129, 166
EarI CTCTTC 2 cut(s) 129, 166
Ecl136II GAGCTC 1 cut(s) 1024
Eco24I GRGCYC 1 cut(s) 1026
Eco31I GGTCTC 1 cut(s) 635
Eco47I GGWCC 2 cut(s) 77, 318
Eco53kI GAGCTC 1 cut(s) 1024
EcoICRI GAGCTC 1 cut(s) 1024
EcoT22I ATGCAT 1 cut(s) 803
EcoT38I GRGCYC 1 cut(s) 1026
FaeI CATG 8 cut(s) 28, 102, 108, 346, 814, 883, 898, 911
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FatI CATG 8 cut(s) 24, 98, 104, 342, 810, 879, 894, 907
FauI CCCGC 1 cut(s) 606
Fnu4HI GCNGC 9 cut(s) 96, 111, 510, 675, 955, 958, 961, 964, 1089
FokI GGATG 5 cut(s) 196, 359, 380, 761, 788
FriOI GRGCYC 1 cut(s) 1026
Fsp4HI GCNGC 9 cut(s) 96, 111, 510, 675, 955, 958, 961, 964, 1089
FspBI CTAG 1 cut(s) 687
GlaI GCGC 1 cut(s) 847
GluI GCNGC 9 cut(s) 96, 111, 510, 675, 955, 958, 961, 964, 1089
HaeII RGCGCY 1 cut(s) 849
HaeIII GGCC 3 cut(s) 172, 561, 721
HhaI GCGC 1 cut(s) 848
Hin1II CATG 8 cut(s) 28, 102, 108, 346, 814, 883, 898, 911
Hin6I GCGC 1 cut(s) 846
HinP1I GCGC 1 cut(s) 846
HincII GTYRAC 1 cut(s) 867
HindII GTYRAC 1 cut(s) 867
HindIII AAGCTT 1 cut(s) 537
HinfI GANTC 3 cut(s) 439, 742, 989
HpaI GTTAAC 1 cut(s) 867
HphI GGTGA 3 cut(s) 350, 357, 545
Hpy166II GTNNAC 3 cut(s) 262, 391, 867
Hpy188I TCNGA 6 cut(s) 227, 373, 489, 635, 752, 821
Hpy188III TCNNGA 5 cut(s) 71, 196, 623, 986, 1075
Hpy8I GTNNAC 3 cut(s) 262, 391, 867
HpyAV CCTTC 5 cut(s) 183, 788, 836, 893, 1111
HpyCH4III ACNGT 3 cut(s) 338, 533, 926
HpyCH4IV ACGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 683, 807, 960, 963
HpyF3I CTNAG 4 cut(s) 638, 806, 849, 950
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 8 cut(s) 28, 102, 108, 346, 814, 883, 898, 911
HspAI GCGC 1 cut(s) 846
KspAI GTTAAC 1 cut(s) 867
Kzo9I GATC 2 cut(s) 493, 752
LguI GCTCTTC 1 cut(s) 166
LpnPI CCDG 8 cut(s) 27, 296, 526, 575, 676, 777, 796, 1039
Lsp1109I GCAGC 7 cut(s) 107, 122, 521, 661, 941, 975, 1075
LweI GCATC 2 cut(s) 584, 810
MaeI CTAG 1 cut(s) 687
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 4 cut(s) 271, 338, 398, 1106
MalI GATC 2 cut(s) 495, 754
MboI GATC 2 cut(s) 493, 752
MboII GAAGA 8 cut(s) 146, 153, 161, 200, 323, 488, 752, 930
MfeI CAATTG 2 cut(s) 384, 699
MflI RGATCY 1 cut(s) 752
MhlI GDGCHC 3 cut(s) 161, 698, 1026
MlsI TGGCCA 1 cut(s) 721
MluCI AATT 4 cut(s) 384, 699, 872, 997
MluNI TGGCCA 1 cut(s) 721
MlyI GAGTC 1 cut(s) 998
MmeI TCCRAC 2 cut(s) 623, 658
MnlI CCTC 6 cut(s) 132, 815, 829, 869, 883, 1024
Mox20I TGGCCA 1 cut(s) 721
Mph1103I ATGCAT 1 cut(s) 803
MroXI GAANNNNTTC 1 cut(s) 455
MscI TGGCCA 1 cut(s) 721
MseI TTAA 2 cut(s) 203, 866
MslI CAYNNNNRTG 2 cut(s) 103, 912
Msp20I TGGCCA 1 cut(s) 721
MunI CAATTG 2 cut(s) 384, 699
Mva1269I GAATGC 2 cut(s) 113, 803
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 5 cut(s) 95, 683, 807, 960, 963
NdeII GATC 2 cut(s) 493, 752
NheI GCTAGC 1 cut(s) 686
NlaIII CATG 8 cut(s) 28, 102, 108, 346, 814, 883, 898, 911
NlaIV GGNNCC 2 cut(s) 695, 754
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 803
NspI RCATGY 4 cut(s) 28, 102, 108, 883
NspV TTCGAA 1 cut(s) 354
PaeI GCATGC 1 cut(s) 883
PciI ACATGT 2 cut(s) 24, 104
PciSI GCTCTTC 1 cut(s) 166
PctI GAATGC 2 cut(s) 113, 803
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 2 cut(s) 439, 742
PflMI CCANNNNNTGG 1 cut(s) 704
PkrI GCNGC 9 cut(s) 97, 112, 511, 676, 956, 959, 962, 965, 1090
PleI GAGTC 1 cut(s) 997
PpsI GAGTC 1 cut(s) 997
PscI ACATGT 2 cut(s) 24, 104
Psp124BI GAGCTC 1 cut(s) 1026
PspN4I GGNNCC 2 cut(s) 695, 754
PspPI GGNCC 2 cut(s) 77, 318
PstI CTGCAG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 752
RsaI GTAC 5 cut(s) 103, 305, 832, 1004, 1014
RsaNI GTAC 5 cut(s) 102, 304, 831, 1003, 1013
RseI CAYNNNNRTG 2 cut(s) 103, 912
SacI GAGCTC 1 cut(s) 1026
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 203, 866
SatI GCNGC 9 cut(s) 96, 111, 510, 675, 955, 958, 961, 964, 1089
Sau3AI GATC 2 cut(s) 493, 752
Sau96I GGNCC 2 cut(s) 77, 318
SchI GAGTC 1 cut(s) 998
SduI GDGCHC 3 cut(s) 161, 698, 1026
SfaNI GCATC 2 cut(s) 584, 810
SfcI CTRYAG 2 cut(s) 93, 973
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 2 cut(s) 77, 318
SmiMI CAYNNNNRTG 2 cut(s) 103, 912
SmlI CTYRAG 5 cut(s) 299, 860, 938, 986, 1075
SmoI CTYRAG 5 cut(s) 299, 860, 938, 986, 1075
SphI GCATGC 1 cut(s) 883
Sse9I AATT 4 cut(s) 384, 699, 872, 997
SsiI CCGC 3 cut(s) 613, 958, 961
SspMI CTAG 1 cut(s) 687
SstI GAGCTC 1 cut(s) 1026
TaaI ACNGT 3 cut(s) 338, 533, 926
TaiI ACGT 1 cut(s) 70
TaqI TCGA 2 cut(s) 354, 1007
TaqII GACCGA 1 cut(s) 335
TasI AATT 4 cut(s) 384, 699, 872, 997
TatI WGTACW 4 cut(s) 101, 830, 1002, 1012
TauI GCSGC 2 cut(s) 960, 963
TfiI GAWTC 2 cut(s) 439, 742
Tru1I TTAA 2 cut(s) 203, 866
Tru9I TTAA 2 cut(s) 203, 866
TscAI CASTG 2 cut(s) 290, 954
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 7 cut(s) 95, 110, 509, 674, 954, 963, 1088
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 2 cut(s) 680, 827
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 2 cut(s) 290, 954
Van91I CCANNNNNTGG 1 cut(s) 704
VpaK11BI GGWCC 2 cut(s) 77, 318
XceI RCATGY 4 cut(s) 28, 102, 108, 883
XmnI GAANNNNTTC 1 cut(s) 455
XspI CTAG 1 cut(s) 687
Zsp2I ATGCAT 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.