Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013615

Physical Location & Seq

Genomic Coordinates Reverse (-)

21205390 .. 21209038

Gene Structure 3649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G242700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTCAGTTGCACCAGTTGAGAATATGGCATCTTTGAGCACAGATCTTTTCTACGATATATTGAGGCGTCTTGATGGACCAACGTTGGCTAGTGCAGCATGTGCTTGTGCAGCATTCTGTTCCATCTCAAAAGAAGAGAGATTATGGGAAGATGTGTGCTCTTCTATGTGGCCTTCGACTAATAGGGAGGATGTCAAAAGTTTAATATTATCCATTGGTGGATTCAGAAAGTTCTATGCTGATTGTTTTCCCCTTATTGTAAACAAGGAAGTTTCAGGGTATCAATGGAATGACTACCTTGAATACCCTGAGGAGTGGACTGAGGCCGAATACTACGGCGACATGGATGAATTTGAAAGTATTTCACCGTCGGATTTTGTTTCTCTTGTGGACATCAGGTACAAGGATAAAATAATCTGCTCAAAAGTTCTTTGGGGCATTCCAAATGCAAATGGCTTCAATGGTTGGTTTTACAACTGCCCCTTTCGGATTGATCTTCTTACTTATGCTGATAGAGATGATGACAACGATGGTGAGGTTTTCCTTTCTGTTGCTAATGGTCTTCCACCAATTACTTCTATGGAGACAGAAAGGAAAGACGGGAAGTTGTGGCGGGGGCTTCGTGATGGACTCCGGCTTAGTTGGATTGTTGTAAATAAGAAAATAAAGCAAGCTGCAAATCTTGCTAGCTGGTGCCCTCTTGGAGGTCAAAGGCATTGGCCAACAGACAAGGATTTTGTGATTCGCTTTGGATCCATCCTTCCCGCCAGAGACATCCTTCCATGTCAAGTAGTAGAATGCATCCTTAGTATGAAGTTCAGAGTGATTTATACTGAGGGTGAAGGTGTTCAGACAACTCTTAAGTTAACAGAATTAAGCATGCAGCTGGAAGACATGGAAGGTTCTCACGTCAATGGAAGAAACAGTTTGCTTATTCTTAAGGAAGCATTAAGCTGCCGTCGGAGCAAAAACTACAGCGAAGTTCTTGAGTCTTGTCACTTATACTCGAAGGTACAGAACGAGCTAAAAGAGGAGAAGATGAGAAACGAAAGCAGGTTAGATAGACTTTGTATCTTAAGTGGCATTGCTGCATTCGTAAGCTTCTGTTACTATGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

374

Amino Acids

42.63

Weight (kDa)

4.98

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013615)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23740 FvH4_2g23740
malus_domestica	MD03G1267000.v1.1
prunus_persica	Prupe.8G242700_v2.0.a1 Prupe.8G242700_v2.0.a1 Prupe.8G242700_v2.0.a1 Prupe.8G242700_v2.0.a1
pyrus_communis	pycom03g21330
rosa_chinensis	RchiOBHm_Chr6g0291231
rosa_laevigata	RLG00000012131
rosa_multiflora	Rmu_sc0013203.1_g000025
rosa_roxburghii	Rroxscaffold_7G00176220
rosa_rugosa	Rorug06G0218500
rosa_samantha	Rh6AG329500 Rh6BG336800 Rh6CG343100 Rh6DG330200
rosa_wichuraiana	Rw6G028640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1044
AccB1I	GGYRCC	1 cut(s)	693
AciI	CCGC	2 cut(s)	613, 765
AclI	AACGTT	1 cut(s)	83
AclWI	GGATC	2 cut(s)	747, 760
AcoI	YGGCCR	1 cut(s)	719
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	2 cut(s)	401, 1014
AfiI	CCNNNNNNNGG	1 cut(s)	704
AflII	CTTAAG	3 cut(s)	860, 938, 1075
AgsI	TTSAA	3 cut(s)	302, 356, 460
AjiI	CACGTC	1 cut(s)	910
AluBI	AGCT	6 cut(s)	674, 690, 886, 954, 1024, 1101
AluI	AGCT	6 cut(s)	674, 690, 886, 954, 1024, 1101
Alw21I	GWGCWC	2 cut(s)	41, 161
Alw26I	GTCTC	2 cut(s)	578, 765
AlwI	GGATC	2 cut(s)	747, 760
AoxI	GGCC	3 cut(s)	170, 324, 719
ApeKI	GCWGC	6 cut(s)	95, 110, 674, 883, 954, 1088
ApoI	RAATTY	1 cut(s)	350
ArsI	GACNNNNNNTTYG	2 cut(s)	719, 751
Asp700I	GAANNNNTTC	1 cut(s)	846
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	3 cut(s)	357, 545, 851
AsuNHI	GCTAGC	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	77
AxyI	CCTNAGG	1 cut(s)	309
BaeGI	GKGCMC	1 cut(s)	698
BalI	TGGCCA	1 cut(s)	721
BamHI	GGATCC	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	693
BbsI	GAAGAC	2 cut(s)	554, 897
Bbv12I	GWGCWC	2 cut(s)	41, 161
BbvI	GCAGC	6 cut(s)	107, 122, 661, 895, 941, 1075
BccI	CCATC	5 cut(s)	68, 131, 524, 620, 764
BceAI	ACGGC	2 cut(s)	352, 942
BcoDI	GTCTC	2 cut(s)	578, 765
BfaI	CTAG	2 cut(s)	90, 687
BfmI	CTRYAG	1 cut(s)	973
BfrI	CTTAAG	3 cut(s)	860, 938, 1075
BfuAI	ACCTGC	1 cut(s)	1044
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	6 cut(s)	96, 111, 675, 884, 955, 1089
BlsI	GCNGC	6 cut(s)	97, 112, 676, 885, 956, 1090
Bme18I	GGWCC	1 cut(s)	77
BmgBI	CACGTC	1 cut(s)	910
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	695, 754
BmsI	GCATC	2 cut(s)	38, 810
BmtI	GCTAGC	1 cut(s)	690
BpiI	GAAGAC	2 cut(s)	554, 897
BpuEI	CTTGAG	1 cut(s)	1007
BsaHI	GRCGYC	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse1I	ACTGG	1 cut(s)	14
Bse21I	CCTNAGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	1083
BseGI	GGATG	5 cut(s)	196, 352, 756, 774, 801
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMI	GCAATG	1 cut(s)	1083
BseMII	CTCAG	3 cut(s)	300, 312, 825
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	2 cut(s)	326, 1046
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	6 cut(s)	107, 122, 661, 895, 941, 1075
BsgI	GTGCAG	2 cut(s)	114, 129
BshFI	GGCC	3 cut(s)	172, 326, 721
BshNI	GGYRCC	1 cut(s)	693
BsiHKAI	GWGCWC	2 cut(s)	41, 161
BsiSI	CCGG	1 cut(s)	634
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmAI	GTCTC	2 cut(s)	578, 765
BsmI	GAATGC	4 cut(s)	113, 438, 803, 1091
BsnI	GGCC	3 cut(s)	172, 326, 721
Bsp1286I	GDGCHC	3 cut(s)	41, 161, 698
Bsp143I	GATC	3 cut(s)	43, 493, 752
BspACI	CCGC	2 cut(s)	613, 765
BspANI	GGCC	3 cut(s)	172, 326, 721
BspCNI	CTCAG	3 cut(s)	301, 313, 826
BspLI	GGNNCC	2 cut(s)	695, 754
BspMI	ACCTGC	1 cut(s)	1044
BspOI	GCTAGC	1 cut(s)	690
BspPI	GGATC	2 cut(s)	747, 760
BspQI	GCTCTTC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	693
BspTI	CTTAAG	3 cut(s)	860, 938, 1075
BsrDI	GCAATG	1 cut(s)	1083
BsrI	ACTGG	1 cut(s)	14
BssMI	GATC	3 cut(s)	43, 493, 752
BssNI	GRCGYC	1 cut(s)	67
Bst4CI	ACNGT	2 cut(s)	369, 926
Bst6I	CTCTTC	2 cut(s)	129, 166
BstACI	GRCGYC	1 cut(s)	67
BstAFI	CTTAAG	3 cut(s)	860, 938, 1075
BstAPI	GCANNNNNTGC	2 cut(s)	101, 683
BstC8I	GCNNGC	3 cut(s)	672, 688, 881
BstDEI	CTNAG	5 cut(s)	309, 321, 638, 806, 834
BstENI	CCTNNNNNAGG	1 cut(s)	702
BstF5I	GGATG	5 cut(s)	196, 352, 756, 774, 801
BstKTI	GATC	3 cut(s)	46, 496, 755
BstMAI	GTCTC	2 cut(s)	578, 765
BstMBI	GATC	3 cut(s)	43, 493, 752
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 101, 110, 683, 963
BstNSI	RCATGY	2 cut(s)	102, 883
BstSFI	CTRYAG	1 cut(s)	973
BstSLI	GKGCMC	1 cut(s)	698
BstV1I	GCAGC	6 cut(s)	107, 122, 661, 895, 941, 1075
BstV2I	GAAGAC	2 cut(s)	554, 897
BstX2I	RGATCY	2 cut(s)	43, 752
BstYI	RGATCY	2 cut(s)	43, 752
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	172, 326, 721
BtrI	CACGTC	1 cut(s)	910
BtsCI	GGATG	5 cut(s)	196, 352, 756, 774, 801
BveI	ACCTGC	1 cut(s)	1044
Cac8I	GCNNGC	3 cut(s)	672, 688, 881
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	400, 1013
CviAII	CATG	5 cut(s)	99, 343, 783, 880, 895
CviQI	GTAC	2 cut(s)	400, 1013
DdeI	CTNAG	5 cut(s)	309, 321, 638, 806, 834
DpnI	GATC	3 cut(s)	45, 495, 754
DpnII	GATC	3 cut(s)	43, 493, 752
EaeI	YGGCCR	1 cut(s)	719
Eam1104I	CTCTTC	2 cut(s)	129, 166
EarI	CTCTTC	2 cut(s)	129, 166
Eco47I	GGWCC	1 cut(s)	77
Eco81I	CCTNAGG	1 cut(s)	309
EcoNI	CCTNNNNNAGG	1 cut(s)	702
EcoT22I	ATGCAT	1 cut(s)	803
FaeI	CATG	5 cut(s)	102, 346, 786, 883, 898
FatI	CATG	5 cut(s)	98, 342, 782, 879, 894
FauI	CCCGC	2 cut(s)	606, 772
Fnu4HI	GCNGC	6 cut(s)	96, 111, 675, 884, 955, 1089
FokI	GGATG	5 cut(s)	203, 359, 743, 761, 788
Fsp4HI	GCNGC	6 cut(s)	96, 111, 675, 884, 955, 1089
FspBI	CTAG	2 cut(s)	90, 687
GluI	GCNGC	6 cut(s)	96, 111, 675, 884, 955, 1089
HaeIII	GGCC	3 cut(s)	172, 326, 721
HapII	CCGG	1 cut(s)	634
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	5 cut(s)	102, 346, 786, 883, 898
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HindIII	AAGCTT	1 cut(s)	1099
HinfI	GANTC	4 cut(s)	222, 630, 742, 989
HpaI	GTTAAC	1 cut(s)	867
HpaII	CCGG	1 cut(s)	634
HphI	GGTGA	3 cut(s)	357, 545, 851
Hpy166II	GTNNAC	4 cut(s)	262, 318, 391, 867
Hpy188I	TCNGA	6 cut(s)	227, 373, 489, 821, 852, 963
Hpy188III	TCNNGA	3 cut(s)	71, 623, 986
Hpy8I	GTNNAC	4 cut(s)	262, 318, 391, 867
Hpy99I	CGWCG	2 cut(s)	373, 963
HpyAV	CCTTC	6 cut(s)	183, 770, 788, 836, 893, 1003
HpyCH4III	ACNGT	2 cut(s)	369, 926
HpyCH4IV	ACGT	2 cut(s)	83, 909
HpyCH4V	TGCA	8 cut(s)	11, 95, 110, 449, 677, 801, 883, 1091
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 101, 110, 683, 963
HpyF3I	CTNAG	5 cut(s)	309, 321, 638, 806, 834
HpySE526I	ACGT	2 cut(s)	83, 909
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	5 cut(s)	102, 346, 786, 883, 898
KspAI	GTTAAC	1 cut(s)	867
Kzo9I	GATC	3 cut(s)	43, 493, 752
LguI	GCTCTTC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	963
LpnPI	CCDG	9 cut(s)	27, 261, 321, 382, 647, 676, 781, 872, 1039
Lsp1109I	GCAGC	6 cut(s)	107, 122, 661, 895, 941, 1075
LweI	GCATC	2 cut(s)	38, 810
MaeI	CTAG	2 cut(s)	90, 687
MaeII	ACGT	2 cut(s)	83, 909
MaeIII	GTNAC	2 cut(s)	995, 1106
MalI	GATC	3 cut(s)	45, 495, 754
MboI	GATC	3 cut(s)	43, 493, 752
MboII	GAAGA	8 cut(s)	146, 153, 161, 488, 554, 902, 930, 1048
MflI	RGATCY	2 cut(s)	43, 752
MhlI	GDGCHC	3 cut(s)	41, 161, 698
MlsI	TGGCCA	1 cut(s)	721
MluCI	AATT	3 cut(s)	350, 570, 872
MluNI	TGGCCA	1 cut(s)	721
MlyI	GAGTC	2 cut(s)	624, 998
MmeI	TCCRAC	3 cut(s)	351, 623, 941
MnlI	CCTC	9 cut(s)	57, 181, 304, 316, 529, 698, 708, 829, 1024
Mox20I	TGGCCA	1 cut(s)	721
Mph1103I	ATGCAT	1 cut(s)	803
MroXI	GAANNNNTTC	1 cut(s)	846
MscI	TGGCCA	1 cut(s)	721
MseI	TTAA	7 cut(s)	203, 861, 866, 875, 939, 950, 1076
MslI	CAYNNNNRTG	1 cut(s)	912
Msp20I	TGGCCA	1 cut(s)	721
MspA1I	CMGCKG	1 cut(s)	886
MspCI	CTTAAG	3 cut(s)	860, 938, 1075
MspI	CCGG	1 cut(s)	634
Mva1269I	GAATGC	4 cut(s)	113, 438, 803, 1091
MwoI	GCNNNNNNNGC	5 cut(s)	95, 101, 110, 683, 963
NdeII	GATC	3 cut(s)	43, 493, 752
NheI	GCTAGC	1 cut(s)	686
NlaIII	CATG	5 cut(s)	102, 346, 786, 883, 898
NlaIV	GGNNCC	2 cut(s)	695, 754
NmuCI	GTSAC	1 cut(s)	995
NsiI	ATGCAT	1 cut(s)	803
NspI	RCATGY	2 cut(s)	102, 883
PaeI	GCATGC	1 cut(s)	883
PciSI	GCTCTTC	1 cut(s)	166
PctI	GAATGC	4 cut(s)	113, 438, 803, 1091
PdmI	GAANNNNTTC	1 cut(s)	846
PfeI	GAWTC	2 cut(s)	222, 742
PkrI	GCNGC	6 cut(s)	97, 112, 676, 885, 956, 1090
PleI	GAGTC	2 cut(s)	624, 997
PpsI	GAGTC	2 cut(s)	624, 997
Psp1406I	AACGTT	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	695, 754
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	2 cut(s)	43, 752
PvuII	CAGCTG	1 cut(s)	886
RsaI	GTAC	2 cut(s)	401, 1014
RsaNI	GTAC	2 cut(s)	400, 1013
RseI	CAYNNNNRTG	1 cut(s)	912
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	7 cut(s)	203, 861, 866, 875, 939, 950, 1076
SatI	GCNGC	6 cut(s)	96, 111, 675, 884, 955, 1089
Sau3AI	GATC	3 cut(s)	43, 493, 752
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	2 cut(s)	624, 998
SduI	GDGCHC	3 cut(s)	41, 161, 698
SfaNI	GCATC	2 cut(s)	38, 810
SfcI	CTRYAG	1 cut(s)	973
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	912
SmlI	CTYRAG	4 cut(s)	860, 938, 986, 1075
SmoI	CTYRAG	4 cut(s)	860, 938, 986, 1075
SphI	GCATGC	1 cut(s)	883
Sse9I	AATT	3 cut(s)	350, 570, 872
SsiI	CCGC	2 cut(s)	613, 765
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	2 cut(s)	90, 687
TaaI	ACNGT	2 cut(s)	369, 926
TaiI	ACGT	2 cut(s)	86, 912
TaqI	TCGA	2 cut(s)	176, 1007
TasI	AATT	3 cut(s)	350, 570, 872
TfiI	GAWTC	2 cut(s)	222, 742
Tru1I	TTAA	7 cut(s)	203, 861, 866, 875, 939, 950, 1076
Tru9I	TTAA	7 cut(s)	203, 861, 866, 875, 939, 950, 1076
TseFI	GTSAC	1 cut(s)	995
TseI	GCWGC	6 cut(s)	95, 110, 674, 883, 954, 1088
Tsp45I	GTSAC	1 cut(s)	995
TspDTI	ATGAA	2 cut(s)	363, 827
Vha464I	CTTAAG	3 cut(s)	860, 938, 1075
VpaK11BI	GGWCC	1 cut(s)	77
XagI	CCTNNNNNAGG	1 cut(s)	702
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	2 cut(s)	102, 883
XmnI	GAANNNNTTC	1 cut(s)	846
XspI	CTAG	2 cut(s)	90, 687
Zsp2I	ATGCAT	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.