Rorug06G0218500

protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013615
Physical Location & Seq
Forward (+)
34888266 .. 34889498
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0218500.1

Sequence Viewer

Length: 690 bp
ATGGGAAGCGTCACTGAGGAAGAGCTGGTTCAAATGGTGACAGACTTCATTGAATCTTCAGAGTCAGTTCCTGACTCATTATCTTCTCCCAAATCCCCTCGTCAATCCAAGTCTCTAACTCTACAGGAGATAATATGGAAGGCAACACATCATGAGAATGAGATACTTGACAAAATATCAATTTATTTGAGGGACATAGAGAGTATGATTGATCAACCCAAGAATCTGAAGAACAAATGGGTTGTGATGAAACTGAAAATGGATGGTTATGAAGCCTCTCTTTGTAAAACTTCATGGGTTTCTTCTGTTAAACTCCCCAAAGTTTATGAATTTACAGATGACTATGAATATGTTGATGTTATGATGAAGGACAACAATTTACTCAAGGTGACAAGGCTAATAGTGGACATGGATTTCAAGTCACAATTTGAGCTTGCAAGACCATCACCAAGCTACAAAGAGCTGAAAGACATTTTGCCAGACATTTTTGTTGGGACTGAAGAAAAACTTGACAAAGTCATATCTCTGGTTTGCTCAGCTGCGAAGAAATCTCTCAAGAAAATGGGTCTTCATGTTCCTCCATGGAGAAAAGCCCCCTACATGCAATCCAAGTGGCTCTCCAAAGATTGCAAGAAAATCTCAATCTCACCCACAAACATGGAATTGGGTATCATCTCGCAAATGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

229

Amino Acids

26.37

Weight (kDa)

6.91

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 25 - 208 3.6e-51 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 3 cut(s) 42, 248, 519
AgsI TTSAA 3 cut(s) 32, 53, 418
AluBI AGCT 5 cut(s) 25, 433, 453, 463, 539
AluI AGCT 5 cut(s) 25, 433, 453, 463, 539
Alw26I GTCTC 1 cut(s) 117
AlwNI CAGNNNCTG 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 1 cut(s) 329
AsuHPI GGTGA 4 cut(s) 49, 400, 438, 639
BbsI GAAGAC 1 cut(s) 560
BbvI GCAGC 1 cut(s) 526
BccI CCATC 2 cut(s) 257, 451
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 688
BfmI CTRYAG 1 cut(s) 122
BisI GCNGC 1 cut(s) 540
BlpI GCTNAGC 1 cut(s) 535
BlsI GCNGC 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 560
Bpu1102I GCTNAGC 1 cut(s) 535
BpuEI CTTGAG 2 cut(s) 368, 539
BsaJI CCNNGG 1 cut(s) 581
BseDI CCNNGG 1 cut(s) 581
BseGI GGATG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 6, 549
BseXI GCAGC 1 cut(s) 526
BslFI GGGAC 2 cut(s) 206, 508
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 2 cut(s) 206, 508
Bsp143I GATC 1 cut(s) 211
Bsp1720I GCTNAGC 1 cut(s) 535
Bsp19I CCATGG 1 cut(s) 581
BspCNI CTCAG 2 cut(s) 7, 548
BspHI TCATGA 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 581
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 581
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 2 cut(s) 15, 535
BstDSI CCRYGG 1 cut(s) 581
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 604
BstSFI CTRYAG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 560
BstXI CCANNNNNNTGG 1 cut(s) 658
BtgI CCRYGG 1 cut(s) 581
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 435
CaiI CAGNNNCTG 1 cut(s) 71
CciI TCATGA 1 cut(s) 151
CspCI CAANNNNNGTGG 2 cut(s) 593, 628
CviAII CATG 7 cut(s) 152, 294, 409, 572, 582, 601, 658
CviJI RGCY 9 cut(s) 25, 275, 397, 433, 453, 463, 539, 593, 616
CviKI_1 RGCY 9 cut(s) 25, 275, 397, 433, 453, 463, 539, 593, 616
DdeI CTNAG 2 cut(s) 15, 535
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 581
Eco57I CTGAAG 3 cut(s) 42, 248, 519
EcoT14I CCWWGG 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 7 cut(s) 155, 297, 412, 575, 585, 604, 661
FalI AAGNNNNNCTT 4 cut(s) 264, 296, 492, 524
FaqI GGGAC 2 cut(s) 206, 508
FatI CATG 7 cut(s) 151, 293, 408, 571, 581, 600, 657
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 1 cut(s) 688
GluI GCNGC 1 cut(s) 540
Hin1II CATG 7 cut(s) 155, 297, 412, 575, 585, 604, 661
HinfI GANTC 4 cut(s) 53, 62, 74, 223
HphI GGTGA 4 cut(s) 49, 400, 438, 639
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 2 cut(s) 61, 228
Hpy188III TCNNGA 3 cut(s) 71, 152, 556
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 2 cut(s) 133, 361
HpyCH4V TGCA 4 cut(s) 437, 604, 630, 685
HpyF3I CTNAG 2 cut(s) 15, 535
Hsp92II CATG 7 cut(s) 155, 297, 412, 575, 585, 604, 661
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 211
LguI GCTCTTC 1 cut(s) 15
LpnPI CCDG 5 cut(s) 11, 84, 110, 492, 512
Lsp1109I GCAGC 1 cut(s) 526
MaeI CTAG 1 cut(s) 688
MaeIII GTNAC 4 cut(s) 10, 37, 388, 420
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 8 cut(s) 32, 48, 75, 241, 294, 512, 556, 560
MluCI AATT 5 cut(s) 180, 329, 376, 425, 662
MlyI GAGTC 2 cut(s) 68, 71
MnlI CCTC 5 cut(s) 10, 108, 183, 286, 588
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 2 cut(s) 156, 656
MspA1I CMGCKG 1 cut(s) 539
NcoI CCATGG 1 cut(s) 581
NdeII GATC 1 cut(s) 211
NlaIII CATG 7 cut(s) 155, 297, 412, 575, 585, 604, 661
NmuCI GTSAC 4 cut(s) 10, 37, 388, 420
NspI RCATGY 1 cut(s) 604
PagI TCATGA 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 53, 223
PflFI GACNNNGTC 1 cut(s) 515
PkrI GCNGC 1 cut(s) 541
PleI GAGTC 2 cut(s) 68, 70
PpsI GAGTC 2 cut(s) 68, 70
PstNI CAGNNNCTG 1 cut(s) 71
PsyI GACNNNGTC 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 539
RseI CAYNNNNRTG 2 cut(s) 156, 656
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 1 cut(s) 211
SchI GAGTC 2 cut(s) 68, 71
SetI ASST 6 cut(s) 27, 390, 435, 455, 465, 541
SfcI CTRYAG 1 cut(s) 122
SmiMI CAYNNNNRTG 2 cut(s) 156, 656
SmlI CTYRAG 2 cut(s) 383, 554
SmoI CTYRAG 2 cut(s) 383, 554
Sse9I AATT 5 cut(s) 180, 329, 376, 425, 662
SspMI CTAG 1 cut(s) 688
StyI CCWWGG 1 cut(s) 581
TasI AATT 5 cut(s) 180, 329, 376, 425, 662
TfiI GAWTC 2 cut(s) 53, 223
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 4 cut(s) 10, 37, 388, 420
TseI GCWGC 1 cut(s) 539
Tsp45I GTSAC 4 cut(s) 10, 37, 388, 420
TspDTI ATGAA 8 cut(s) 37, 263, 282, 285, 342, 360, 380, 560
TspRI CASTG 1 cut(s) 19
Tth111I GACNNNGTC 1 cut(s) 515
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 604
XspI CTAG 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.