Rroxscaffold_7G00176220

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013615
Physical Location & Seq
Forward (+)
15693147 .. 15694265
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176220.1

Sequence Viewer

Length: 1119 bp
ATGTCAGTTGCACCAGTTGAGAACATGGCATCTTTGAACACGGACCTTTTCTATGATATATTGAGACGTCTCGATGGACCAACTTTAGCTACTGCAGCATGTACATGTGCAGCGTTCTGTTCCATCTCAAAAGAAGAGAGGTTATGGGAAGATGTATGCTCTTCTATGTGGCCTTCAACTAATAGGGAAGATGTCAAGAGTTTAATATCGTCCATTGGTGGGTTCAGAAAGTTCTATGCTGATTGTTTTCCCCTTATTGTAAACAAGGAAGTTACTGACTACCAATGGAATGACTACCTTGAGTACCCTGAAGAATGGACCGAAGCTGAATATTACGGTGACATGGATGAGTTCGAAAGTATATCACCATCAGATTTTGTTTCAATTGTGGACATCCGGTACAAGGATAAACTAATTTGCTCAAAAGTTCTCTGGGGGATTCCAAATGCAAACGGCTTCAATGGTTGGTTTTACAATTGCCCATTTCGAATTGATCTTCTTACTTATGCAGCTAGAGATGATGATGACGGGGAAGCTTTCCTTTCTGTTGCTAACGGCCTGCCACCAATCACATCTATGGAGACAGAAAGGAAAGATGGGAAGTTATGGCGGGGGCTTCGTGATGGCCTCCGGCTTAGTTGGATTGTCGTAAATAGAAAAATGAAGCAAGCTGCTAATCTTGCTAGCTGGTGCCCTATTGGTGGTCAAAGGCATTGGCCAACAGACAAGGACTTTGTGATTCGCTTCGGATCCATTCTTCCTGCTAGAGACATCCTTCCTTGTCAAGTAGTGGAATGCATCCTCAGCATGAAGTTCCGAGTGATTTGTACTGAGGGAGAAGGTGCTGAGACAACCCTCAAGTTAACAGAATTGAGCATGCAGTTAGAAGACATGGAAGGTTCTCATGTCAACGGAAGAAACAGTTTGCTAATTCTAAAGGAAGCGCTGAGCTGCCGCCGTAGCAAAAACTACAGTGAAGTTCTTGAGTCGTGCAATTTGTACTCGAAAGTGCAGAACGAGCTCAAAGAGGAGAAGATGAGAAGCGAAAGCAGGTTAGATAGACTTTGTATCTTGAGTGGCATTGCTGCATTTATATCCTTCTGTTACTATGTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

372

Amino Acids

42.48

Weight (kDa)

4.89

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 1041
AccB1I GGYRCC 1 cut(s) 690
AciI CCGC 2 cut(s) 610, 955
AclWI GGATC 2 cut(s) 744, 757
AcoI YGGCCR 1 cut(s) 716
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 5 cut(s) 103, 305, 401, 829, 1001
AfeI AGCGCT 1 cut(s) 945
AfiI CCNNNNNNNGG 3 cut(s) 219, 403, 701
AflIII ACRYGT 1 cut(s) 104
AgsI TTSAA 4 cut(s) 37, 177, 384, 460
AluBI AGCT 8 cut(s) 89, 326, 512, 536, 671, 687, 951, 1021
AluI AGCT 8 cut(s) 89, 326, 512, 536, 671, 687, 951, 1021
Alw21I GWGCWC 1 cut(s) 1023
Alw26I GTCTC 5 cut(s) 58, 74, 575, 762, 842
AlwI GGATC 2 cut(s) 744, 757
Aor51HI AGCGCT 1 cut(s) 945
AoxI GGCC 4 cut(s) 170, 556, 625, 716
ApeKI GCWGC 6 cut(s) 95, 110, 509, 671, 951, 1085
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
AspLEI GCGC 1 cut(s) 946
AspS9I GGNCC 3 cut(s) 43, 77, 318
AsuHPI GGTGA 2 cut(s) 350, 357
AsuII TTCGAA 2 cut(s) 354, 487
AsuNHI GCTAGC 1 cut(s) 683
AvaII GGWCC 3 cut(s) 43, 77, 318
BaeGI GKGCMC 1 cut(s) 695
BalI TGGCCA 1 cut(s) 718
BamHI GGATCC 1 cut(s) 749
BanI GGYRCC 1 cut(s) 690
BanII GRGCYC 1 cut(s) 1023
BbsI GAAGAC 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 1023
BbvCI CCTCAGC 1 cut(s) 803
BbvI GCAGC 6 cut(s) 107, 122, 521, 658, 938, 1072
BccI CCATC 5 cut(s) 68, 131, 376, 590, 617
BceAI ACGGC 3 cut(s) 469, 571, 942
BcoDI GTCTC 5 cut(s) 58, 74, 575, 762, 842
BfaI CTAG 3 cut(s) 513, 684, 765
BfmI CTRYAG 2 cut(s) 93, 970
BfoI RGCGCY 1 cut(s) 947
BfuAI ACCTGC 1 cut(s) 1041
BisI GCNGC 7 cut(s) 96, 111, 510, 672, 952, 955, 1086
BlpI GCTNAGC 1 cut(s) 947
BlsI GCNGC 7 cut(s) 97, 112, 511, 673, 953, 956, 1087
Bme18I GGWCC 3 cut(s) 43, 77, 318
BmgT120I GGNCC 3 cut(s) 43, 77, 318
BmiI GGNNCC 2 cut(s) 692, 751
BmsI GCATC 2 cut(s) 38, 807
BmtI GCTAGC 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 894
Bpu10I CCTNAGC 1 cut(s) 803
Bpu1102I GCTNAGC 1 cut(s) 947
Bpu14I TTCGAA 2 cut(s) 354, 487
BpuEI CTTGAG 4 cut(s) 320, 842, 1004, 1093
BsaHI GRCGYC 1 cut(s) 67
BsaWI WCCGGW 1 cut(s) 396
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 403, 701
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 1080
BseGI GGATG 4 cut(s) 352, 393, 771, 798
BseLI CCNNNNNNNGG 3 cut(s) 219, 403, 701
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 4 cut(s) 817, 822, 837, 938
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 1043
BseSI GKGCMC 1 cut(s) 695
BseXI GCAGC 6 cut(s) 107, 122, 521, 658, 938, 1072
BsgI GTGCAG 2 cut(s) 129, 1031
BshFI GGCC 4 cut(s) 172, 558, 627, 718
BshNI GGYRCC 1 cut(s) 690
BsiHKAI GWGCWC 1 cut(s) 1023
BsiSI CCGG 2 cut(s) 397, 631
BslI CCNNNNNNNGG 3 cut(s) 219, 403, 701
BsmAI GTCTC 5 cut(s) 58, 74, 575, 762, 842
BsmBI CGTCTC 2 cut(s) 58, 74
BsmI GAATGC 1 cut(s) 800
BsnI GGCC 4 cut(s) 172, 558, 627, 718
Bsp119I TTCGAA 2 cut(s) 354, 487
Bsp1286I GDGCHC 2 cut(s) 695, 1023
Bsp1407I TGTACA 1 cut(s) 101
Bsp143I GATC 2 cut(s) 493, 749
Bsp1720I GCTNAGC 1 cut(s) 947
BspACI CCGC 2 cut(s) 610, 955
BspANI GGCC 4 cut(s) 172, 558, 627, 718
BspCNI CTCAG 4 cut(s) 816, 823, 838, 939
BspLI GGNNCC 2 cut(s) 692, 751
BspMAI CTGCAG 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 1041
BspOI GCTAGC 1 cut(s) 687
BspPI GGATC 2 cut(s) 744, 757
BspQI GCTCTTC 1 cut(s) 166
BspT104I TTCGAA 2 cut(s) 354, 487
BspT107I GGYRCC 1 cut(s) 690
BsrDI GCAATG 1 cut(s) 1080
BsrGI TGTACA 1 cut(s) 101
BsrI ACTGG 1 cut(s) 14
BssMI GATC 2 cut(s) 493, 749
BssNI GRCGYC 1 cut(s) 67
Bst4CI ACNGT 3 cut(s) 338, 923, 974
Bst6I CTCTTC 2 cut(s) 129, 166
BstACI GRCGYC 1 cut(s) 67
BstAUI TGTACA 1 cut(s) 101
BstBI TTCGAA 2 cut(s) 354, 487
BstC8I GCNNGC 4 cut(s) 560, 669, 685, 878
BstDEI CTNAG 5 cut(s) 635, 803, 831, 846, 947
BstF5I GGATG 4 cut(s) 352, 393, 771, 798
BstH2I RGCGCY 1 cut(s) 947
BstHHI GCGC 1 cut(s) 946
BstKTI GATC 2 cut(s) 496, 752
BstMAI GTCTC 5 cut(s) 58, 74, 575, 762, 842
BstMBI GATC 2 cut(s) 493, 749
BstMWI GCNNNNNNNGC 5 cut(s) 95, 680, 804, 960, 1018
BstNSI RCATGY 3 cut(s) 102, 108, 880
BstSFI CTRYAG 2 cut(s) 93, 970
BstSLI GKGCMC 1 cut(s) 695
BstV1I GCAGC 6 cut(s) 107, 122, 521, 658, 938, 1072
BstV2I GAAGAC 1 cut(s) 894
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
BsuRI GGCC 4 cut(s) 172, 558, 627, 718
BtsCI GGATG 4 cut(s) 352, 393, 771, 798
BtsIMutI CAGTG 1 cut(s) 979
BveI ACCTGC 1 cut(s) 1041
Cac8I GCNNGC 4 cut(s) 560, 669, 685, 878
CfoI GCGC 1 cut(s) 946
Cfr13I GGNCC 3 cut(s) 43, 77, 318
Csp6I GTAC 5 cut(s) 102, 304, 400, 828, 1000
CviAII CATG 8 cut(s) 25, 99, 105, 343, 808, 877, 892, 905
CviQI GTAC 5 cut(s) 102, 304, 400, 828, 1000
DdeI CTNAG 5 cut(s) 635, 803, 831, 846, 947
DpnI GATC 2 cut(s) 495, 751
DpnII GATC 2 cut(s) 493, 749
EaeI YGGCCR 1 cut(s) 716
Eam1104I CTCTTC 2 cut(s) 129, 166
EarI CTCTTC 2 cut(s) 129, 166
Ecl136II GAGCTC 1 cut(s) 1021
Eco24I GRGCYC 1 cut(s) 1023
Eco47I GGWCC 3 cut(s) 43, 77, 318
Eco47III AGCGCT 1 cut(s) 945
Eco53kI GAGCTC 1 cut(s) 1021
Eco57I CTGAAG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 1021
EcoT22I ATGCAT 1 cut(s) 800
EcoT38I GRGCYC 1 cut(s) 1023
Esp3I CGTCTC 2 cut(s) 58, 74
FaeI CATG 8 cut(s) 28, 102, 108, 346, 811, 880, 895, 908
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 8 cut(s) 24, 98, 104, 342, 807, 876, 891, 904
FauI CCCGC 1 cut(s) 603
Fnu4HI GCNGC 7 cut(s) 96, 111, 510, 672, 952, 955, 1086
FokI GGATG 4 cut(s) 359, 380, 758, 785
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 7 cut(s) 96, 111, 510, 672, 952, 955, 1086
FspBI CTAG 3 cut(s) 513, 684, 765
GlaI GCGC 1 cut(s) 945
GluI GCNGC 7 cut(s) 96, 111, 510, 672, 952, 955, 1086
HaeII RGCGCY 1 cut(s) 947
HaeIII GGCC 4 cut(s) 172, 558, 627, 718
HapII CCGG 2 cut(s) 397, 631
HhaI GCGC 1 cut(s) 946
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 8 cut(s) 28, 102, 108, 346, 811, 880, 895, 908
Hin6I GCGC 1 cut(s) 944
HinP1I GCGC 1 cut(s) 944
HincII GTYRAC 2 cut(s) 864, 910
HindII GTYRAC 2 cut(s) 864, 910
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 3 cut(s) 439, 739, 986
HpaI GTTAAC 1 cut(s) 864
HpaII CCGG 2 cut(s) 397, 631
HphI GGTGA 2 cut(s) 350, 357
Hpy166II GTNNAC 4 cut(s) 262, 391, 864, 910
Hpy188I TCNGA 4 cut(s) 227, 373, 749, 818
Hpy188III TCNNGA 5 cut(s) 71, 196, 620, 983, 1072
Hpy8I GTNNAC 4 cut(s) 262, 391, 864, 910
HpyAV CCTTC 5 cut(s) 183, 785, 833, 890, 1108
HpyCH4III ACNGT 3 cut(s) 338, 923, 974
HpyCH4IV ACGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 680, 804, 960, 1018
HpyF3I CTNAG 5 cut(s) 635, 803, 831, 846, 947
HpySE526I ACGT 1 cut(s) 67
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 8 cut(s) 28, 102, 108, 346, 811, 880, 895, 908
HspAI GCGC 1 cut(s) 944
KspAI GTTAAC 1 cut(s) 864
Kzo9I GATC 2 cut(s) 493, 749
LguI GCTCTTC 1 cut(s) 166
LpnPI CCDG 9 cut(s) 27, 321, 410, 418, 572, 644, 673, 774, 1036
Lsp1109I GCAGC 6 cut(s) 107, 122, 521, 658, 938, 1072
LweI GCATC 2 cut(s) 38, 807
MaeI CTAG 3 cut(s) 513, 684, 765
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 3 cut(s) 271, 338, 1103
MalI GATC 2 cut(s) 495, 751
MboI GATC 2 cut(s) 493, 749
MfeI CAATTG 2 cut(s) 384, 475
MflI RGATCY 1 cut(s) 749
MhlI GDGCHC 2 cut(s) 695, 1023
MlsI TGGCCA 1 cut(s) 718
MluCI AATT 7 cut(s) 384, 414, 475, 489, 869, 930, 994
MluNI TGGCCA 1 cut(s) 718
MlyI GAGTC 1 cut(s) 995
MmeI TCCRAC 1 cut(s) 620
MnlI CCTC 6 cut(s) 132, 638, 812, 826, 866, 1021
Mox20I TGGCCA 1 cut(s) 718
Mph1103I ATGCAT 1 cut(s) 800
MscI TGGCCA 1 cut(s) 718
MseI TTAA 2 cut(s) 203, 863
MslI CAYNNNNRTG 2 cut(s) 103, 575
Msp20I TGGCCA 1 cut(s) 718
MspI CCGG 2 cut(s) 397, 631
MunI CAATTG 2 cut(s) 384, 475
Mva1269I GAATGC 1 cut(s) 800
MwoI GCNNNNNNNGC 5 cut(s) 95, 680, 804, 960, 1018
NdeII GATC 2 cut(s) 493, 749
NheI GCTAGC 1 cut(s) 683
NlaIII CATG 8 cut(s) 28, 102, 108, 346, 811, 880, 895, 908
NlaIV GGNNCC 2 cut(s) 692, 751
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 800
NspI RCATGY 3 cut(s) 102, 108, 880
NspV TTCGAA 2 cut(s) 354, 487
PaeI GCATGC 1 cut(s) 880
PciI ACATGT 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 166
PctI GAATGC 1 cut(s) 800
PfeI GAWTC 2 cut(s) 439, 739
PkrI GCNGC 7 cut(s) 97, 112, 511, 673, 953, 956, 1087
PleI GAGTC 1 cut(s) 994
PpsI GAGTC 1 cut(s) 994
PscI ACATGT 1 cut(s) 104
Psp124BI GAGCTC 1 cut(s) 1023
PspN4I GGNNCC 2 cut(s) 692, 751
PspPI GGNCC 3 cut(s) 43, 77, 318
PstI CTGCAG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 749
RsaI GTAC 5 cut(s) 103, 305, 401, 829, 1001
RsaNI GTAC 5 cut(s) 102, 304, 400, 828, 1000
RseI CAYNNNNRTG 2 cut(s) 103, 575
SacI GAGCTC 1 cut(s) 1023
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 203, 863
SatI GCNGC 7 cut(s) 96, 111, 510, 672, 952, 955, 1086
Sau3AI GATC 2 cut(s) 493, 749
Sau96I GGNCC 3 cut(s) 43, 77, 318
SchI GAGTC 1 cut(s) 995
SduI GDGCHC 2 cut(s) 695, 1023
SfaNI GCATC 2 cut(s) 38, 807
SfcI CTRYAG 2 cut(s) 93, 970
SfuI TTCGAA 2 cut(s) 354, 487
SinI GGWCC 3 cut(s) 43, 77, 318
SmiMI CAYNNNNRTG 2 cut(s) 103, 575
SmlI CTYRAG 4 cut(s) 299, 857, 983, 1072
SmoI CTYRAG 4 cut(s) 299, 857, 983, 1072
SphI GCATGC 1 cut(s) 880
Sse9I AATT 7 cut(s) 384, 414, 475, 489, 869, 930, 994
SsiI CCGC 2 cut(s) 610, 955
SspI AATATT 1 cut(s) 332
SspMI CTAG 3 cut(s) 513, 684, 765
SstI GAGCTC 1 cut(s) 1023
TaaI ACNGT 3 cut(s) 338, 923, 974
TaiI ACGT 1 cut(s) 70
TaqI TCGA 4 cut(s) 72, 354, 487, 1004
TaqII GACCGA 1 cut(s) 335
TasI AATT 7 cut(s) 384, 414, 475, 489, 869, 930, 994
TatI WGTACW 3 cut(s) 101, 827, 999
TauI GCSGC 1 cut(s) 957
TfiI GAWTC 2 cut(s) 439, 739
Tru1I TTAA 2 cut(s) 203, 863
Tru9I TTAA 2 cut(s) 203, 863
TscAI CASTG 1 cut(s) 979
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 6 cut(s) 95, 110, 509, 671, 951, 1085
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 2 cut(s) 677, 824
TspGWI ACGGA 2 cut(s) 56, 927
TspRI CASTG 1 cut(s) 979
VpaK11BI GGWCC 3 cut(s) 43, 77, 318
XceI RCATGY 3 cut(s) 102, 108, 880
XspI CTAG 3 cut(s) 513, 684, 765
ZraI GACGTC 1 cut(s) 68
Zsp2I ATGCAT 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.