Rh6BG336800

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013615
Physical Location & Seq
Reverse (-)
57003292 .. 57007523
4232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG336800.1

Sequence Viewer

Length: 1119 bp
ATGTCAGTTGCACCAGTTGAGAACATGGCATCTTTGAACACAGACCTTTTCTATGATATATTGAGACGTCTCGATGGACCAACTTTAGCTACTGCAGCATGTACATGTGCAGCATTCTGTTCCATCTCAAAAGAAGAGAGGTTATGGGAAGATGTATGCTCTTCTATGTGGCCTTCGACTAATAGGGAAGATGTCAAGAGTTTAATATCGTCCATTGGTGGGTTCAGAAAGTTCTATGCTGATTGTTTTCCCCTTATTGTAAACAAGGAAGTTACTGACTACCAATGGAATGACTACCTTGAGTACCCGGAAGAATGGACCGAAGCTGAATATTATGGTGACATGGATGAGTTCGAAAGTATATCACCATCAGATTTTGTTTCAATTGTGGACATCCGGTACAAGGATAAACTAATTTGCTCAAAAGTTCTTTGGGGGATTCCAAATGCAAACGGCTTCAATGGTTGGTTTTACAACTGCCCATTTCGAATTGATCTTCTTACTTATGCAGCTAGAGATGATGATGACGGGGAAGCTTTCCTTTCTGTTGCTAACGGCCTGCCACCAATCACATCTATGGAGACAGAAAGGAAAGATGGGAAGTTATGGCGGGGGCTCCGTGATGGCCTCCGGCTTAGTTGGATAGTCGTAAATAGAAAAATGAAGCAAGCTGCTAATCTTGCTAGCTGGTGCCCTATTGGTGGTCAAAGGCATTGGCCAACAGACAAGGACTTTGTGATTCGCTTCGGATCCATTCTTCCTGCTAGAGACATCCTTCCTTGTCAAGTAGTGGAATGCATCCTCAGCATGAAGTTCCGAGTGATTTGTACTGAAGGAGAAGGTGCTGAGACAACCCTCAAGTTAACAGAATTGAGCATGCAGTTAGAAGACATGGAAGGTTCTCATGTCAATGGAAGAAACAGTTTGCTAATTCTCAAGGAAGCGCTGAGCTGCCGCCGTAGCAAAAACTACAGTGAAGTTCTTGAGTCGTGCAATTTGTACTCGAAAGTGCAGAACGAGCTCAAAGAGGAGAAGATGAGAAGCGAAAGCAGGTTAGATAGACTTTGTATCTTGAGTGGCATTGCTGCATTTATATCCTTCTGTTACTATGTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

372

Amino Acids

42.48

Weight (kDa)

4.89

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 1041
AccB1I GGYRCC 1 cut(s) 690
AciI CCGC 2 cut(s) 610, 955
AclWI GGATC 2 cut(s) 744, 757
AcoI YGGCCR 1 cut(s) 716
AcuI CTGAAG 1 cut(s) 852
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 5 cut(s) 103, 305, 401, 829, 1001
AfeI AGCGCT 1 cut(s) 945
AfiI CCNNNNNNNGG 3 cut(s) 219, 403, 701
AflIII ACRYGT 1 cut(s) 104
AgsI TTSAA 3 cut(s) 37, 384, 460
AluBI AGCT 8 cut(s) 89, 326, 512, 536, 671, 687, 951, 1021
AluI AGCT 8 cut(s) 89, 326, 512, 536, 671, 687, 951, 1021
Alw21I GWGCWC 1 cut(s) 1023
Alw26I GTCTC 5 cut(s) 58, 74, 575, 762, 842
AlwI GGATC 2 cut(s) 744, 757
Aor51HI AGCGCT 1 cut(s) 945
AoxI GGCC 4 cut(s) 170, 556, 625, 716
ApeKI GCWGC 6 cut(s) 95, 110, 509, 671, 951, 1085
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
AspLEI GCGC 1 cut(s) 946
AspS9I GGNCC 2 cut(s) 77, 318
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 350, 357
AsuII TTCGAA 2 cut(s) 354, 487
AsuNHI GCTAGC 1 cut(s) 683
AvaII GGWCC 2 cut(s) 77, 318
BaeGI GKGCMC 1 cut(s) 695
BalI TGGCCA 1 cut(s) 718
BamHI GGATCC 1 cut(s) 749
BanI GGYRCC 1 cut(s) 690
BanII GRGCYC 2 cut(s) 618, 1023
BbsI GAAGAC 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 1023
BbvCI CCTCAGC 1 cut(s) 803
BbvI GCAGC 6 cut(s) 107, 122, 521, 658, 938, 1072
BccI CCATC 5 cut(s) 68, 131, 376, 590, 617
BceAI ACGGC 3 cut(s) 469, 571, 942
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 5 cut(s) 58, 74, 575, 762, 842
BfaI CTAG 3 cut(s) 513, 684, 765
BfmI CTRYAG 2 cut(s) 93, 970
BfoI RGCGCY 1 cut(s) 947
BfuAI ACCTGC 1 cut(s) 1041
BisI GCNGC 7 cut(s) 96, 111, 510, 672, 952, 955, 1086
BlpI GCTNAGC 1 cut(s) 947
BlsI GCNGC 7 cut(s) 97, 112, 511, 673, 953, 956, 1087
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 2 cut(s) 77, 318
BmgT120I GGNCC 2 cut(s) 77, 318
BmiI GGNNCC 3 cut(s) 617, 692, 751
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 2 cut(s) 38, 807
BmtI GCTAGC 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 894
Bpu10I CCTNAGC 1 cut(s) 803
Bpu1102I GCTNAGC 1 cut(s) 947
Bpu14I TTCGAA 2 cut(s) 354, 487
BpuEI CTTGAG 5 cut(s) 320, 842, 920, 1004, 1093
BpuMI CCSGG 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 67
BsaWI WCCGGW 1 cut(s) 396
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 403, 701
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 1080
BseGI GGATG 4 cut(s) 352, 393, 771, 798
BseLI CCNNNNNNNGG 3 cut(s) 219, 403, 701
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 3 cut(s) 817, 837, 938
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 1043
BseSI GKGCMC 1 cut(s) 695
BseXI GCAGC 6 cut(s) 107, 122, 521, 658, 938, 1072
BsgI GTGCAG 2 cut(s) 129, 1031
BshFI GGCC 4 cut(s) 172, 558, 627, 718
BshNI GGYRCC 1 cut(s) 690
BsiHKAI GWGCWC 1 cut(s) 1023
BsiSI CCGG 3 cut(s) 308, 397, 631
BslI CCNNNNNNNGG 3 cut(s) 219, 403, 701
BsmAI GTCTC 5 cut(s) 58, 74, 575, 762, 842
BsmBI CGTCTC 2 cut(s) 58, 74
BsmI GAATGC 2 cut(s) 113, 800
BsnI GGCC 4 cut(s) 172, 558, 627, 718
Bsp119I TTCGAA 2 cut(s) 354, 487
Bsp1286I GDGCHC 3 cut(s) 618, 695, 1023
Bsp1407I TGTACA 1 cut(s) 101
Bsp143I GATC 2 cut(s) 493, 749
Bsp1720I GCTNAGC 1 cut(s) 947
BspACI CCGC 2 cut(s) 610, 955
BspANI GGCC 4 cut(s) 172, 558, 627, 718
BspCNI CTCAG 3 cut(s) 816, 838, 939
BspLI GGNNCC 3 cut(s) 617, 692, 751
BspMAI CTGCAG 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 1041
BspOI GCTAGC 1 cut(s) 687
BspPI GGATC 2 cut(s) 744, 757
BspQI GCTCTTC 1 cut(s) 166
BspT104I TTCGAA 2 cut(s) 354, 487
BspT107I GGYRCC 1 cut(s) 690
BsrDI GCAATG 1 cut(s) 1080
BsrGI TGTACA 1 cut(s) 101
BsrI ACTGG 1 cut(s) 14
BssMI GATC 2 cut(s) 493, 749
BssNI GRCGYC 1 cut(s) 67
Bst4CI ACNGT 2 cut(s) 923, 974
Bst6I CTCTTC 2 cut(s) 129, 166
BstACI GRCGYC 1 cut(s) 67
BstAUI TGTACA 1 cut(s) 101
BstBI TTCGAA 2 cut(s) 354, 487
BstC8I GCNNGC 4 cut(s) 560, 669, 685, 878
BstDEI CTNAG 4 cut(s) 635, 803, 846, 947
BstF5I GGATG 4 cut(s) 352, 393, 771, 798
BstH2I RGCGCY 1 cut(s) 947
BstHHI GCGC 1 cut(s) 946
BstKTI GATC 2 cut(s) 496, 752
BstMAI GTCTC 5 cut(s) 58, 74, 575, 762, 842
BstMBI GATC 2 cut(s) 493, 749
BstMWI GCNNNNNNNGC 5 cut(s) 95, 680, 804, 960, 1018
BstNSI RCATGY 3 cut(s) 102, 108, 880
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 2 cut(s) 93, 970
BstSLI GKGCMC 1 cut(s) 695
BstV1I GCAGC 6 cut(s) 107, 122, 521, 658, 938, 1072
BstV2I GAAGAC 1 cut(s) 894
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
BsuRI GGCC 4 cut(s) 172, 558, 627, 718
BtsCI GGATG 4 cut(s) 352, 393, 771, 798
BtsIMutI CAGTG 1 cut(s) 979
BveI ACCTGC 1 cut(s) 1041
Cac8I GCNNGC 4 cut(s) 560, 669, 685, 878
CfoI GCGC 1 cut(s) 946
Cfr13I GGNCC 2 cut(s) 77, 318
Csp6I GTAC 5 cut(s) 102, 304, 400, 828, 1000
CviAII CATG 8 cut(s) 25, 99, 105, 343, 808, 877, 892, 905
CviQI GTAC 5 cut(s) 102, 304, 400, 828, 1000
DdeI CTNAG 4 cut(s) 635, 803, 846, 947
DpnI GATC 2 cut(s) 495, 751
DpnII GATC 2 cut(s) 493, 749
EaeI YGGCCR 1 cut(s) 716
Eam1104I CTCTTC 2 cut(s) 129, 166
EarI CTCTTC 2 cut(s) 129, 166
Ecl136II GAGCTC 1 cut(s) 1021
Eco24I GRGCYC 2 cut(s) 618, 1023
Eco47I GGWCC 2 cut(s) 77, 318
Eco47III AGCGCT 1 cut(s) 945
Eco53kI GAGCTC 1 cut(s) 1021
Eco57I CTGAAG 1 cut(s) 852
EcoICRI GAGCTC 1 cut(s) 1021
EcoT22I ATGCAT 1 cut(s) 800
EcoT38I GRGCYC 2 cut(s) 618, 1023
Esp3I CGTCTC 2 cut(s) 58, 74
FaeI CATG 8 cut(s) 28, 102, 108, 346, 811, 880, 895, 908
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 8 cut(s) 24, 98, 104, 342, 807, 876, 891, 904
FauI CCCGC 1 cut(s) 603
Fnu4HI GCNGC 7 cut(s) 96, 111, 510, 672, 952, 955, 1086
FokI GGATG 4 cut(s) 359, 380, 758, 785
FriOI GRGCYC 2 cut(s) 618, 1023
Fsp4HI GCNGC 7 cut(s) 96, 111, 510, 672, 952, 955, 1086
FspBI CTAG 3 cut(s) 513, 684, 765
GlaI GCGC 1 cut(s) 945
GluI GCNGC 7 cut(s) 96, 111, 510, 672, 952, 955, 1086
HaeII RGCGCY 1 cut(s) 947
HaeIII GGCC 4 cut(s) 172, 558, 627, 718
HapII CCGG 3 cut(s) 308, 397, 631
HhaI GCGC 1 cut(s) 946
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 8 cut(s) 28, 102, 108, 346, 811, 880, 895, 908
Hin6I GCGC 1 cut(s) 944
HinP1I GCGC 1 cut(s) 944
HincII GTYRAC 1 cut(s) 864
HindII GTYRAC 1 cut(s) 864
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 3 cut(s) 439, 739, 986
HpaI GTTAAC 1 cut(s) 864
HpaII CCGG 3 cut(s) 308, 397, 631
HphI GGTGA 2 cut(s) 350, 357
Hpy166II GTNNAC 3 cut(s) 262, 391, 864
Hpy188I TCNGA 4 cut(s) 227, 373, 749, 818
Hpy188III TCNNGA 4 cut(s) 71, 196, 983, 1072
Hpy8I GTNNAC 3 cut(s) 262, 391, 864
HpyAV CCTTC 6 cut(s) 183, 785, 827, 833, 890, 1108
HpyCH4III ACNGT 2 cut(s) 923, 974
HpyCH4IV ACGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 680, 804, 960, 1018
HpyF3I CTNAG 4 cut(s) 635, 803, 846, 947
HpySE526I ACGT 1 cut(s) 67
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 8 cut(s) 28, 102, 108, 346, 811, 880, 895, 908
HspAI GCGC 1 cut(s) 944
KspAI GTTAAC 1 cut(s) 864
Kzo9I GATC 2 cut(s) 493, 749
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 621
LpnPI CCDG 8 cut(s) 27, 321, 410, 572, 644, 673, 774, 1036
Lsp1109I GCAGC 6 cut(s) 107, 122, 521, 658, 938, 1072
LweI GCATC 2 cut(s) 38, 807
MaeI CTAG 3 cut(s) 513, 684, 765
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 3 cut(s) 271, 338, 1103
MalI GATC 2 cut(s) 495, 751
MboI GATC 2 cut(s) 493, 749
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 1 cut(s) 749
MhlI GDGCHC 3 cut(s) 618, 695, 1023
MlsI TGGCCA 1 cut(s) 718
MluCI AATT 6 cut(s) 384, 414, 489, 869, 930, 994
MluNI TGGCCA 1 cut(s) 718
MlyI GAGTC 1 cut(s) 995
MmeI TCCRAC 1 cut(s) 620
MnlI CCTC 5 cut(s) 132, 638, 812, 866, 1021
Mox20I TGGCCA 1 cut(s) 718
Mph1103I ATGCAT 1 cut(s) 800
MscI TGGCCA 1 cut(s) 718
MseI TTAA 2 cut(s) 203, 863
MslI CAYNNNNRTG 3 cut(s) 103, 575, 909
Msp20I TGGCCA 1 cut(s) 718
MspI CCGG 3 cut(s) 308, 397, 631
MspR9I CCNGG 1 cut(s) 308
MunI CAATTG 1 cut(s) 384
Mva1269I GAATGC 2 cut(s) 113, 800
MwoI GCNNNNNNNGC 5 cut(s) 95, 680, 804, 960, 1018
NciI CCSGG 1 cut(s) 308
NdeII GATC 2 cut(s) 493, 749
NheI GCTAGC 1 cut(s) 683
NlaIII CATG 8 cut(s) 28, 102, 108, 346, 811, 880, 895, 908
NlaIV GGNNCC 3 cut(s) 617, 692, 751
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 800
NspI RCATGY 3 cut(s) 102, 108, 880
NspV TTCGAA 2 cut(s) 354, 487
PaeI GCATGC 1 cut(s) 880
PciI ACATGT 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 166
PctI GAATGC 2 cut(s) 113, 800
PfeI GAWTC 2 cut(s) 439, 739
PkrI GCNGC 7 cut(s) 97, 112, 511, 673, 953, 956, 1087
PleI GAGTC 1 cut(s) 994
PpsI GAGTC 1 cut(s) 994
PscI ACATGT 1 cut(s) 104
Psp124BI GAGCTC 1 cut(s) 1023
PspN4I GGNNCC 3 cut(s) 617, 692, 751
PspPI GGNCC 2 cut(s) 77, 318
PstI CTGCAG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 749
RsaI GTAC 5 cut(s) 103, 305, 401, 829, 1001
RsaNI GTAC 5 cut(s) 102, 304, 400, 828, 1000
RseI CAYNNNNRTG 3 cut(s) 103, 575, 909
SacI GAGCTC 1 cut(s) 1023
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 203, 863
SatI GCNGC 7 cut(s) 96, 111, 510, 672, 952, 955, 1086
Sau3AI GATC 2 cut(s) 493, 749
Sau96I GGNCC 2 cut(s) 77, 318
SchI GAGTC 1 cut(s) 995
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 3 cut(s) 618, 695, 1023
SfaNI GCATC 2 cut(s) 38, 807
SfcI CTRYAG 2 cut(s) 93, 970
SfuI TTCGAA 2 cut(s) 354, 487
SinI GGWCC 2 cut(s) 77, 318
SmiMI CAYNNNNRTG 3 cut(s) 103, 575, 909
SmlI CTYRAG 5 cut(s) 299, 857, 935, 983, 1072
SmoI CTYRAG 5 cut(s) 299, 857, 935, 983, 1072
SphI GCATGC 1 cut(s) 880
Sse9I AATT 6 cut(s) 384, 414, 489, 869, 930, 994
SsiI CCGC 2 cut(s) 610, 955
SspI AATATT 1 cut(s) 332
SspMI CTAG 3 cut(s) 513, 684, 765
SstI GAGCTC 1 cut(s) 1023
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 923, 974
TaiI ACGT 1 cut(s) 70
TaqI TCGA 5 cut(s) 72, 176, 354, 487, 1004
TaqII GACCGA 1 cut(s) 335
TasI AATT 6 cut(s) 384, 414, 489, 869, 930, 994
TatI WGTACW 3 cut(s) 101, 827, 999
TauI GCSGC 1 cut(s) 957
TfiI GAWTC 2 cut(s) 439, 739
Tru1I TTAA 2 cut(s) 203, 863
Tru9I TTAA 2 cut(s) 203, 863
TscAI CASTG 1 cut(s) 979
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 6 cut(s) 95, 110, 509, 671, 951, 1085
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 2 cut(s) 677, 824
TspGWI ACGGA 1 cut(s) 608
TspRI CASTG 1 cut(s) 979
VpaK11BI GGWCC 2 cut(s) 77, 318
XceI RCATGY 3 cut(s) 102, 108, 880
XspI CTAG 3 cut(s) 513, 684, 765
ZraI GACGTC 1 cut(s) 68
Zsp2I ATGCAT 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.