Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0013615

Physical Location & Seq

Genomic Coordinates Reverse (-)

21632752 .. 21635501

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAGAGATCTATTGCAAATGTCAGTTGCACAGGTCGAGAATATGGCATCTTTGAACACAGACCTTTTCTACGATATATTGAAGCGTCTTGATGGACCAACTTTGGCTAGTGCAGCATGCGCCTGTGCAGCATTCTGTTCCATCTCAAGGGAAGAAAGATTGTGGGAAAATGTGTGCTCTTCTATGTGGCCTTCCACTAATCGGGAAGACGTCAAGAGTTTGATACTATCCATTGGTGGATTCCGAAAGTTCTATGCAGATTGTTTTCCCCTTATTGTAAACAAGGAAGTTTCCGAGTATCAATGGAATGACTACCTCGAGTATCCTGAAGAATGGACTGAGGCTGAATACTATGGTGACATGGATGAATTCGAAAGTATTTCACCATCGGATTTTGTTTCTCTCGTGGACATTAGGTACAAGGACAAAATAATCTGCTCAAAAGTTCTTTGGGGCATTCCGAATGCAAATGGCTTCAATGGTTGGTTTTACAACTGCCCTTTTCGGATCGATCTTCTTACTTATGCAGATAGAGATGATGACAACGATGGTGAAGTTTTCCTCTCTGCTGCTAACGGTCTACCACCGATCACATCTATGGAGACAGAAAGGAAGGATGGGAAGTTATGGAGGGGGCTGCGAGATGGACTCCGGCTTAGTTGGATTGTTGTAAATAGAAAAATAAAGCAAGCTGCTAATCTTGCGAGCTGGTGCCCTCTCGGCGGTCAAAGACATTGGCCAACGGACAAGGATTTCGTGATTCGCTTTGGATCCATTCTTCCCGCCAGAGACATCCTTCCGTGTCAAGTAGTAGAATGCATCCTCAGTATGAAGTTCAGAGTGATTTGCACCGAAGGCGAAGGTGTTCAGACAACCCTCAAGTTAACGGAACTAAGCATGCAGTTGGAAGACATGGAAGGCTCCCACGTCAACGGAAGAAACAGTTTGCTTATTCTCAAGGAAGCGCTGAGCTGCCGGCGGAGCAAAAACTACAGCGAAGTTCTCGAGTCGTGTCACTTGTACTCGAAAGTACAGAACGAGCTGAAAGAGGAGAAGATGAGGAATGAAAGCCGGTTAGATAGGCTCTGTATCTTGAGCGGCATTGCCGCGTTCATGTCCTTCTGTTACTATGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

380

Amino Acids

43.48

Weight (kDa)

4.99

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013615)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23740 FvH4_2g23740
malus_domestica	MD03G1267000.v1.1
prunus_persica	Prupe.8G242700_v2.0.a1 Prupe.8G242700_v2.0.a1 Prupe.8G242700_v2.0.a1 Prupe.8G242700_v2.0.a1
pyrus_communis	pycom03g21330
rosa_chinensis	RchiOBHm_Chr6g0291231
rosa_laevigata	RLG00000012131
rosa_multiflora	Rmu_sc0013203.1_g000025
rosa_roxburghii	Rroxscaffold_7G00176220
rosa_rugosa	Rorug06G0218500
rosa_samantha	Rh6AG329500 Rh6BG336800 Rh6CG343100 Rh6DG330200
rosa_wichuraiana	Rw6G028640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	711
AccBSI	CCGCTC	1 cut(s)	1098
AccI	GTMKAC	1 cut(s)	580
AccII	CGCG	1 cut(s)	1109
AciI	CCGC	5 cut(s)	723, 783, 979, 1098, 1107
AclWI	GGATC	3 cut(s)	515, 765, 778
AcoI	YGGCCR	1 cut(s)	737
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	3 cut(s)	419, 1022, 1032
AfeI	AGCGCT	1 cut(s)	966
AfiI	CCNNNNNNNGG	3 cut(s)	147, 201, 722
AgsI	TTSAA	3 cut(s)	55, 82, 478
AjiI	CACGTC	1 cut(s)	928
AluBI	AGCT	4 cut(s)	692, 708, 972, 1042
AluI	AGCT	4 cut(s)	692, 708, 972, 1042
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	2 cut(s)	596, 783
AlwI	GGATC	3 cut(s)	515, 765, 778
Ama87I	CYCGRG	2 cut(s)	317, 1004
Aor51HI	AGCGCT	1 cut(s)	966
AoxI	GGCC	2 cut(s)	188, 737
ApeKI	GCWGC	6 cut(s)	113, 128, 569, 637, 692, 972
ApoI	RAATTY	1 cut(s)	368
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
Asp700I	GAANNNNTTC	1 cut(s)	864
AspLEI	GCGC	2 cut(s)	122, 967
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	3 cut(s)	368, 375, 563
AsuII	TTCGAA	1 cut(s)	372
AvaI	CYCGRG	2 cut(s)	317, 1004
AvaII	GGWCC	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	716
BalI	TGGCCA	1 cut(s)	739
BamHI	GGATCC	1 cut(s)	770
BanI	GGYRCC	1 cut(s)	711
BauI	CACGAG	1 cut(s)	404
BbsI	GAAGAC	2 cut(s)	213, 915
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	6 cut(s)	125, 140, 556, 624, 679, 959
BccI	CCATC	6 cut(s)	86, 149, 394, 542, 611, 638
BciVI	GTATCC	1 cut(s)	333
BcoDI	GTCTC	2 cut(s)	596, 783
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	991
BfoI	RGCGCY	1 cut(s)	968
BfuI	GTATCC	1 cut(s)	333
BglI	GCCNNNNNGGC	1 cut(s)	720
BglII	AGATCT	1 cut(s)	7
BisI	GCNGC	8 cut(s)	114, 129, 570, 638, 693, 973, 1099, 1107
BlpI	GCTNAGC	1 cut(s)	968
BlsI	GCNGC	8 cut(s)	115, 130, 571, 639, 694, 974, 1100, 1108
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	2 cut(s)	317, 1004
BmgBI	CACGTC	1 cut(s)	928
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	3 cut(s)	713, 772, 922
BmsI	GCATC	2 cut(s)	56, 828
BpiI	GAAGAC	2 cut(s)	213, 915
BplI	GAGNNNNNCTC	2 cut(s)	633, 665
Bpu1102I	GCTNAGC	1 cut(s)	968
Bpu14I	TTCGAA	1 cut(s)	372
BpuEI	CTTGAG	4 cut(s)	130, 863, 941, 1114
Bsa29I	ATCGAT	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 201, 722
Bse118I	RCCGGY	2 cut(s)	975, 1071
Bse3DI	GCAATG	1 cut(s)	1101
BseCI	ATCGAT	1 cut(s)	510
BseGI	GGATG	4 cut(s)	370, 622, 792, 819
BseLI	CCNNNNNNNGG	3 cut(s)	147, 201, 722
BseMI	GCAATG	1 cut(s)	1101
BseMII	CTCAG	3 cut(s)	330, 838, 959
BseRI	GAGGAG	1 cut(s)	1064
BseSI	GKGCMC	1 cut(s)	716
BseXI	GCAGC	6 cut(s)	125, 140, 556, 624, 679, 959
BsgI	GTGCAG	2 cut(s)	132, 147
Bsh1236I	CGCG	1 cut(s)	1109
BshFI	GGCC	2 cut(s)	190, 739
BshNI	GGYRCC	1 cut(s)	711
BshVI	ATCGAT	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	2 cut(s)	317, 1004
BsiSI	CCGG	3 cut(s)	652, 976, 1072
BslI	CCNNNNNNNGG	3 cut(s)	147, 201, 722
BsmAI	GTCTC	2 cut(s)	596, 783
BsmI	GAATGC	4 cut(s)	131, 456, 469, 821
BsnI	GGCC	2 cut(s)	190, 739
BsoBI	CYCGRG	2 cut(s)	317, 1004
Bsp119I	TTCGAA	1 cut(s)	372
Bsp1286I	GDGCHC	2 cut(s)	179, 716
Bsp143I	GATC	5 cut(s)	7, 507, 511, 588, 770
Bsp1720I	GCTNAGC	1 cut(s)	968
BspACI	CCGC	5 cut(s)	723, 783, 979, 1098, 1107
BspANI	GGCC	2 cut(s)	190, 739
BspCNI	CTCAG	3 cut(s)	331, 837, 960
BspDI	ATCGAT	1 cut(s)	510
BspFNI	CGCG	1 cut(s)	1109
BspLI	GGNNCC	3 cut(s)	713, 772, 922
BspPI	GGATC	3 cut(s)	515, 765, 778
BspQI	GCTCTTC	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	711
BsrBI	CCGCTC	1 cut(s)	1098
BsrDI	GCAATG	1 cut(s)	1101
BsrFI	RCCGGY	2 cut(s)	975, 1071
BssAI	RCCGGY	2 cut(s)	975, 1071
BssMI	GATC	5 cut(s)	7, 507, 511, 588, 770
BssNI	GRCGYC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	578, 944
Bst6I	CTCTTC	1 cut(s)	184
BstACI	GRCGYC	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	372
BstC8I	GCNNGC	5 cut(s)	118, 690, 706, 899, 977
BstDEI	CTNAG	5 cut(s)	339, 656, 824, 893, 968
BstF5I	GGATG	4 cut(s)	370, 622, 792, 819
BstFNI	CGCG	1 cut(s)	1109
BstH2I	RGCGCY	1 cut(s)	968
BstHHI	GCGC	2 cut(s)	122, 967
BstKTI	GATC	5 cut(s)	10, 510, 514, 591, 773
BstMAI	GTCTC	2 cut(s)	596, 783
BstMBI	GATC	5 cut(s)	7, 507, 511, 588, 770
BstMWI	GCNNNNNNNGC	7 cut(s)	113, 119, 128, 701, 720, 855, 981
BstNSI	RCATGY	2 cut(s)	120, 901
BstSFI	CTRYAG	1 cut(s)	991
BstSLI	GKGCMC	1 cut(s)	716
BstUI	CGCG	1 cut(s)	1109
BstV1I	GCAGC	6 cut(s)	125, 140, 556, 624, 679, 959
BstV2I	GAAGAC	2 cut(s)	213, 915
BstX2I	RGATCY	2 cut(s)	7, 770
BstYI	RGATCY	2 cut(s)	7, 770
Bsu15I	ATCGAT	1 cut(s)	510
BsuI	GTATCC	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	190, 739
BsuTUI	ATCGAT	1 cut(s)	510
BtrI	CACGTC	1 cut(s)	928
BtsCI	GGATG	4 cut(s)	370, 622, 792, 819
Cac8I	GCNNGC	5 cut(s)	118, 690, 706, 899, 977
CfoI	GCGC	2 cut(s)	122, 967
Cfr10I	RCCGGY	2 cut(s)	975, 1071
Cfr13I	GGNCC	1 cut(s)	95
ClaI	ATCGAT	1 cut(s)	510
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	418, 1021, 1031
CviAII	CATG	5 cut(s)	117, 361, 898, 913, 1114
CviQI	GTAC	3 cut(s)	418, 1021, 1031
DdeI	CTNAG	5 cut(s)	339, 656, 824, 893, 968
DpnI	GATC	5 cut(s)	9, 509, 513, 590, 772
DpnII	GATC	5 cut(s)	7, 507, 511, 588, 770
EaeI	YGGCCR	1 cut(s)	737
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
EciI	GGCGGA	1 cut(s)	994
Eco47I	GGWCC	1 cut(s)	95
Eco47III	AGCGCT	1 cut(s)	966
Eco57I	CTGAAG	1 cut(s)	348
Eco88I	CYCGRG	2 cut(s)	317, 1004
EcoRI	GAATTC	1 cut(s)	368
EcoT22I	ATGCAT	1 cut(s)	821
FaeI	CATG	5 cut(s)	120, 364, 901, 916, 1117
FatI	CATG	5 cut(s)	116, 360, 897, 912, 1113
FauI	CCCGC	1 cut(s)	790
FblI	GTMKAC	1 cut(s)	580
Fnu4HI	GCNGC	8 cut(s)	114, 129, 570, 638, 693, 973, 1099, 1107
FokI	GGATG	4 cut(s)	377, 629, 779, 806
Fsp4HI	GCNGC	8 cut(s)	114, 129, 570, 638, 693, 973, 1099, 1107
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	2 cut(s)	121, 966
GluI	GCNGC	8 cut(s)	114, 129, 570, 638, 693, 973, 1099, 1107
HaeII	RGCGCY	1 cut(s)	968
HaeIII	GGCC	2 cut(s)	190, 739
HapII	CCGG	3 cut(s)	652, 976, 1072
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	2 cut(s)	122, 967
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	5 cut(s)	120, 364, 901, 916, 1117
Hin6I	GCGC	2 cut(s)	120, 965
HinP1I	GCGC	2 cut(s)	120, 965
HincII	GTYRAC	2 cut(s)	885, 931
HindII	GTYRAC	2 cut(s)	885, 931
HinfI	GANTC	4 cut(s)	240, 648, 760, 1007
HpaI	GTTAAC	1 cut(s)	885
HpaII	CCGG	3 cut(s)	652, 976, 1072
HphI	GGTGA	3 cut(s)	368, 375, 563
Hpy166II	GTNNAC	5 cut(s)	280, 409, 581, 885, 931
Hpy188I	TCNGA	7 cut(s)	245, 295, 391, 462, 507, 839, 870
Hpy188III	TCNNGA	8 cut(s)	37, 89, 203, 214, 326, 757, 1004, 1093
Hpy8I	GTNNAC	5 cut(s)	280, 409, 581, 885, 931
HpyAV	CCTTC	7 cut(s)	201, 607, 806, 848, 854, 911, 1129
HpyCH4III	ACNGT	2 cut(s)	578, 944
HpyCH4IV	ACGT	2 cut(s)	210, 927
HpyF10VI	GCNNNNNNNGC	7 cut(s)	113, 119, 128, 701, 720, 855, 981
HpyF3I	CTNAG	5 cut(s)	339, 656, 824, 893, 968
HpySE526I	ACGT	2 cut(s)	210, 927
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	5 cut(s)	120, 364, 901, 916, 1117
HspAI	GCGC	2 cut(s)	120, 965
KroI	GCCGGC	1 cut(s)	975
KroNI	GCCGGC	1 cut(s)	977
KspAI	GTTAAC	1 cut(s)	885
Kzo9I	GATC	5 cut(s)	7, 507, 511, 588, 770
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	926, 981
LpnPI	CCDG	8 cut(s)	17, 136, 339, 665, 694, 799, 989, 1085
Lsp1109I	GCAGC	6 cut(s)	125, 140, 556, 624, 679, 959
LweI	GCATC	2 cut(s)	56, 828
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	2 cut(s)	210, 927
MaeIII	GTNAC	3 cut(s)	356, 1013, 1124
MalI	GATC	5 cut(s)	9, 509, 513, 590, 772
MbiI	CCGCTC	1 cut(s)	1098
MboI	GATC	5 cut(s)	7, 507, 511, 588, 770
MboII	GAAGA	9 cut(s)	164, 171, 218, 341, 506, 770, 920, 948, 1066
MflI	RGATCY	2 cut(s)	7, 770
MhlI	GDGCHC	2 cut(s)	179, 716
MlsI	TGGCCA	1 cut(s)	739
MluCI	AATT	1 cut(s)	368
MluNI	TGGCCA	1 cut(s)	739
MlyI	GAGTC	2 cut(s)	642, 1016
MmeI	TCCRAC	2 cut(s)	641, 885
MnlI	CCTC	9 cut(s)	326, 334, 572, 624, 726, 833, 887, 1042, 1053
Mox20I	TGGCCA	1 cut(s)	739
Mph1103I	ATGCAT	1 cut(s)	821
MroNI	GCCGGC	1 cut(s)	975
MroXI	GAANNNNTTC	1 cut(s)	864
MscI	TGGCCA	1 cut(s)	739
MseI	TTAA	1 cut(s)	884
MslI	CAYNNNNRTG	1 cut(s)	596
Msp20I	TGGCCA	1 cut(s)	739
MspI	CCGG	3 cut(s)	652, 976, 1072
Mva1269I	GAATGC	4 cut(s)	131, 456, 469, 821
MvnI	CGCG	1 cut(s)	1109
MwoI	GCNNNNNNNGC	7 cut(s)	113, 119, 128, 701, 720, 855, 981
NaeI	GCCGGC	1 cut(s)	977
NdeII	GATC	5 cut(s)	7, 507, 511, 588, 770
NgoMIV	GCCGGC	1 cut(s)	975
NlaIII	CATG	5 cut(s)	120, 364, 901, 916, 1117
NlaIV	GGNNCC	3 cut(s)	713, 772, 922
NmeAIII	GCCGAG	1 cut(s)	699
NmuCI	GTSAC	2 cut(s)	356, 1013
NsiI	ATGCAT	1 cut(s)	821
NspI	RCATGY	2 cut(s)	120, 901
NspV	TTCGAA	1 cut(s)	372
PaeI	GCATGC	2 cut(s)	120, 901
PaeR7I	CTCGAG	2 cut(s)	317, 1004
PciSI	GCTCTTC	1 cut(s)	184
PctI	GAATGC	4 cut(s)	131, 456, 469, 821
PdiI	GCCGGC	1 cut(s)	977
PdmI	GAANNNNTTC	1 cut(s)	864
PfeI	GAWTC	2 cut(s)	240, 760
PkrI	GCNGC	8 cut(s)	115, 130, 571, 639, 694, 974, 1100, 1108
PleI	GAGTC	2 cut(s)	642, 1015
PpsI	GAGTC	2 cut(s)	642, 1015
PspN4I	GGNNCC	3 cut(s)	713, 772, 922
PspPI	GGNCC	1 cut(s)	95
PspXI	VCTCGAGB	1 cut(s)	317
PsuI	RGATCY	2 cut(s)	7, 770
RsaI	GTAC	3 cut(s)	419, 1022, 1032
RsaNI	GTAC	3 cut(s)	418, 1021, 1031
RseI	CAYNNNNRTG	1 cut(s)	596
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	884
SatI	GCNGC	8 cut(s)	114, 129, 570, 638, 693, 973, 1099, 1107
Sau3AI	GATC	5 cut(s)	7, 507, 511, 588, 770
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	2 cut(s)	642, 1016
SduI	GDGCHC	2 cut(s)	179, 716
SfaNI	GCATC	2 cut(s)	56, 828
SfcI	CTRYAG	1 cut(s)	991
Sfr274I	CTCGAG	2 cut(s)	317, 1004
SfuI	TTCGAA	1 cut(s)	372
SinI	GGWCC	1 cut(s)	95
SlaI	CTCGAG	2 cut(s)	317, 1004
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	6 cut(s)	145, 317, 878, 956, 1004, 1093
SmoI	CTYRAG	6 cut(s)	145, 317, 878, 956, 1004, 1093
SphI	GCATGC	2 cut(s)	120, 901
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	5 cut(s)	723, 783, 979, 1098, 1107
SspMI	CTAG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	578, 944
TaiI	ACGT	2 cut(s)	213, 930
TaqI	TCGA	6 cut(s)	36, 318, 372, 510, 1005, 1025
TasI	AATT	1 cut(s)	368
TatI	WGTACW	2 cut(s)	1020, 1030
TauI	GCSGC	2 cut(s)	1101, 1109
TfiI	GAWTC	2 cut(s)	240, 760
Tru1I	TTAA	1 cut(s)	884
Tru9I	TTAA	1 cut(s)	884
TseFI	GTSAC	2 cut(s)	356, 1013
TseI	GCWGC	6 cut(s)	113, 128, 569, 637, 692, 972
Tsp45I	GTSAC	2 cut(s)	356, 1013
TspDTI	ATGAA	4 cut(s)	381, 845, 1080, 1102
TspGWI	ACGGA	4 cut(s)	758, 789, 902, 948
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	2 cut(s)	120, 901
XhoI	CTCGAG	2 cut(s)	317, 1004
XmiI	GTMKAC	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	864
XspI	CTAG	1 cut(s)	108
ZraI	GACGTC	1 cut(s)	211
Zsp2I	ATGCAT	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.