Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013615

Physical Location & Seq

Genomic Coordinates Forward (+)

15558459 .. 15563083

Gene Structure 4625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012131

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTCAGTTGCACCAGTTGAGAACATGGCATCGTTGAACACAGACCTTTTCTATGATATATTGAGACGTCTCGATGGACCAACTTTAGCTACTGCAGCATGTACATGTGCAGCATTCTGTTCCATCTCAAAAGAAGAGAGGTTATGGGAAGATGTATGCTCTTCTATGTGGCCTTCGACTAATAGAGAAGATGTCAAGAGTTTAATATCGTCCATTGGTGGGTTCAGAAAGTTCTATGCTGATTGTTTTCCCCTTATTGTAAACAAGGAAGTTACTGACTACCAATGGAATGACTACCTTGAGTACCCGGAAGAATGGACCGAAGCTGAATATTACGGTGACATGGATGAGTTCGAAAATATATCACCATCAGATTTTGTTTCAATTGTGGACATCCGGTACAAGGATAAACTAATTTGCTCAAAAGTTCTTTGGGGGATTCCAAATGCAAACGGCTTCAATGGTTGGTTTTACAACTGCCCATTTCGAATTGATCTTCTTACTTATGCAGCTAGAGATGATGATGACGGGGAAGCTTTCCTTTCTGTTGCTAACGGCCTGCCACCAATCACATCTATGGAGACAGAAAGGAAAGATGGGAAGTTATGGCGGGGGCTCCGTGATGGTCTCCGGCTTAGTTGGATTGTCGTAAATAGAAAAATGAAGCAAGCTGCTAATCTTGCTAGCTGGTGCCCTATTGGTGGTCAAAGGCATTGGCCAACAGACAAGGACTTTGTGATTCGCTTCGGATCCATTCTTCCTGCTAGAGACATCCTTCCTTGTCAAGTAGTGGAATGCATCCTCAGCATGAAGTTCCGAGTGATTTGTACTGAGGGAGAAGGTGCTGAGACAACCCTCAAGTTAACAGAATTGAGCATGCAGTTAGAAGACATGGAAGGTTCTCATGTCAACGGAAGAAACAGTTTGCTAATTCTCAAGGAAGCACTGAGCTGCCGCCGTAGCAAAAACTACAGTGAAGTTCTTGAGTCGTGCAATTTGTACTCGAAAGTGCAGAATGAGCTCAAAGAGGAGAAGATGAGAAGCGAAAGCAGGTTAGATAGACTTTGTATCTTGAGTGGCATTGCTGCATTTATATCCTTCTGTTACTATGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

373

Amino Acids

42.51

Weight (kDa)

4.89

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013615)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23740 FvH4_2g23740
malus_domestica	MD03G1267000.v1.1
prunus_persica	Prupe.8G242700_v2.0.a1 Prupe.8G242700_v2.0.a1 Prupe.8G242700_v2.0.a1 Prupe.8G242700_v2.0.a1
pyrus_communis	pycom03g21330
rosa_chinensis	RchiOBHm_Chr6g0291231
rosa_laevigata	RLG00000012131
rosa_multiflora	Rmu_sc0013203.1_g000025
rosa_roxburghii	Rroxscaffold_7G00176220
rosa_rugosa	Rorug06G0218500
rosa_samantha	Rh6AG329500 Rh6BG336800 Rh6CG343100 Rh6DG330200
rosa_wichuraiana	Rw6G028640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	1041
AccB1I	GGYRCC	1 cut(s)	690
AciI	CCGC	2 cut(s)	610, 955
AclWI	GGATC	2 cut(s)	744, 757
AcoI	YGGCCR	1 cut(s)	716
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	5 cut(s)	103, 305, 401, 829, 1001
AfiI	CCNNNNNNNGG	3 cut(s)	219, 403, 701
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	37, 384, 460
AluBI	AGCT	8 cut(s)	89, 326, 512, 536, 671, 687, 951, 1021
AluI	AGCT	8 cut(s)	89, 326, 512, 536, 671, 687, 951, 1021
Alw21I	GWGCWC	1 cut(s)	1023
Alw26I	GTCTC	6 cut(s)	58, 74, 575, 632, 762, 842
AlwI	GGATC	2 cut(s)	744, 757
AoxI	GGCC	3 cut(s)	170, 556, 716
ApeKI	GCWGC	6 cut(s)	95, 110, 509, 671, 951, 1085
ArsI	GACNNNNNNTTYG	2 cut(s)	716, 748
AspS9I	GGNCC	2 cut(s)	77, 318
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	350, 357
AsuII	TTCGAA	2 cut(s)	354, 487
AsuNHI	GCTAGC	1 cut(s)	683
AvaII	GGWCC	2 cut(s)	77, 318
BaeGI	GKGCMC	1 cut(s)	695
BalI	TGGCCA	1 cut(s)	718
BamHI	GGATCC	1 cut(s)	749
BanI	GGYRCC	1 cut(s)	690
BanII	GRGCYC	2 cut(s)	618, 1023
BbsI	GAAGAC	1 cut(s)	894
Bbv12I	GWGCWC	1 cut(s)	1023
BbvCI	CCTCAGC	1 cut(s)	803
BbvI	GCAGC	6 cut(s)	107, 122, 521, 658, 938, 1072
BccI	CCATC	5 cut(s)	68, 131, 376, 590, 617
BceAI	ACGGC	3 cut(s)	469, 571, 942
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	6 cut(s)	58, 74, 575, 632, 762, 842
BfaI	CTAG	3 cut(s)	513, 684, 765
BfmI	CTRYAG	2 cut(s)	93, 970
BfuAI	ACCTGC	1 cut(s)	1041
BisI	GCNGC	7 cut(s)	96, 111, 510, 672, 952, 955, 1086
BlsI	GCNGC	7 cut(s)	97, 112, 511, 673, 953, 956, 1087
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	2 cut(s)	77, 318
BmgT120I	GGNCC	2 cut(s)	77, 318
BmiI	GGNNCC	3 cut(s)	617, 692, 751
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	2 cut(s)	38, 807
BmtI	GCTAGC	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	894
Bpu10I	CCTNAGC	1 cut(s)	803
Bpu14I	TTCGAA	2 cut(s)	354, 487
BpuEI	CTTGAG	5 cut(s)	320, 842, 920, 1004, 1093
BpuMI	CCSGG	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	67
BsaI	GGTCTC	1 cut(s)	632
BsaWI	WCCGGW	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 403, 701
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	1080
BseGI	GGATG	4 cut(s)	352, 393, 771, 798
BseLI	CCNNNNNNNGG	3 cut(s)	219, 403, 701
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	4 cut(s)	817, 822, 837, 938
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	1043
BseSI	GKGCMC	1 cut(s)	695
BseXI	GCAGC	6 cut(s)	107, 122, 521, 658, 938, 1072
BsgI	GTGCAG	2 cut(s)	129, 1031
BshFI	GGCC	3 cut(s)	172, 558, 718
BshNI	GGYRCC	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	1023
BsiSI	CCGG	3 cut(s)	308, 397, 631
BslI	CCNNNNNNNGG	3 cut(s)	219, 403, 701
BsmAI	GTCTC	6 cut(s)	58, 74, 575, 632, 762, 842
BsmBI	CGTCTC	2 cut(s)	58, 74
BsmI	GAATGC	2 cut(s)	113, 800
BsnI	GGCC	3 cut(s)	172, 558, 718
Bso31I	GGTCTC	1 cut(s)	632
Bsp119I	TTCGAA	2 cut(s)	354, 487
Bsp1286I	GDGCHC	3 cut(s)	618, 695, 1023
Bsp1407I	TGTACA	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	493, 749
BspACI	CCGC	2 cut(s)	610, 955
BspANI	GGCC	3 cut(s)	172, 558, 718
BspCNI	CTCAG	4 cut(s)	816, 823, 838, 939
BspLI	GGNNCC	3 cut(s)	617, 692, 751
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	1041
BspOI	GCTAGC	1 cut(s)	687
BspPI	GGATC	2 cut(s)	744, 757
BspQI	GCTCTTC	1 cut(s)	166
BspT104I	TTCGAA	2 cut(s)	354, 487
BspT107I	GGYRCC	1 cut(s)	690
BspTNI	GGTCTC	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	1080
BsrGI	TGTACA	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	14
BssMI	GATC	2 cut(s)	493, 749
BssNI	GRCGYC	1 cut(s)	67
Bst4CI	ACNGT	3 cut(s)	338, 923, 974
Bst6I	CTCTTC	2 cut(s)	129, 166
BstACI	GRCGYC	1 cut(s)	67
BstAUI	TGTACA	1 cut(s)	101
BstBI	TTCGAA	2 cut(s)	354, 487
BstC8I	GCNNGC	4 cut(s)	560, 669, 685, 878
BstDEI	CTNAG	5 cut(s)	635, 803, 831, 846, 947
BstF5I	GGATG	4 cut(s)	352, 393, 771, 798
BstKTI	GATC	2 cut(s)	496, 752
BstMAI	GTCTC	6 cut(s)	58, 74, 575, 632, 762, 842
BstMBI	GATC	2 cut(s)	493, 749
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 680, 804, 960, 1018
BstNSI	RCATGY	3 cut(s)	102, 108, 880
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	2 cut(s)	93, 970
BstSLI	GKGCMC	1 cut(s)	695
BstV1I	GCAGC	6 cut(s)	107, 122, 521, 658, 938, 1072
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	749
BsuRI	GGCC	3 cut(s)	172, 558, 718
BtsCI	GGATG	4 cut(s)	352, 393, 771, 798
BtsIMutI	CAGTG	2 cut(s)	944, 979
BveI	ACCTGC	1 cut(s)	1041
Cac8I	GCNNGC	4 cut(s)	560, 669, 685, 878
Cfr13I	GGNCC	2 cut(s)	77, 318
Csp6I	GTAC	5 cut(s)	102, 304, 400, 828, 1000
CviAII	CATG	8 cut(s)	25, 99, 105, 343, 808, 877, 892, 905
CviQI	GTAC	5 cut(s)	102, 304, 400, 828, 1000
DdeI	CTNAG	5 cut(s)	635, 803, 831, 846, 947
DpnI	GATC	2 cut(s)	495, 751
DpnII	GATC	2 cut(s)	493, 749
EaeI	YGGCCR	1 cut(s)	716
Eam1104I	CTCTTC	2 cut(s)	129, 166
EarI	CTCTTC	2 cut(s)	129, 166
Ecl136II	GAGCTC	1 cut(s)	1021
Eco24I	GRGCYC	2 cut(s)	618, 1023
Eco31I	GGTCTC	1 cut(s)	632
Eco47I	GGWCC	2 cut(s)	77, 318
Eco53kI	GAGCTC	1 cut(s)	1021
EcoICRI	GAGCTC	1 cut(s)	1021
EcoT22I	ATGCAT	1 cut(s)	800
EcoT38I	GRGCYC	2 cut(s)	618, 1023
Esp3I	CGTCTC	2 cut(s)	58, 74
FaeI	CATG	8 cut(s)	28, 102, 108, 346, 811, 880, 895, 908
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	8 cut(s)	24, 98, 104, 342, 807, 876, 891, 904
FauI	CCCGC	1 cut(s)	603
Fnu4HI	GCNGC	7 cut(s)	96, 111, 510, 672, 952, 955, 1086
FokI	GGATG	4 cut(s)	359, 380, 758, 785
FriOI	GRGCYC	2 cut(s)	618, 1023
Fsp4HI	GCNGC	7 cut(s)	96, 111, 510, 672, 952, 955, 1086
FspBI	CTAG	3 cut(s)	513, 684, 765
GluI	GCNGC	7 cut(s)	96, 111, 510, 672, 952, 955, 1086
HaeIII	GGCC	3 cut(s)	172, 558, 718
HapII	CCGG	3 cut(s)	308, 397, 631
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	8 cut(s)	28, 102, 108, 346, 811, 880, 895, 908
HincII	GTYRAC	2 cut(s)	864, 910
HindII	GTYRAC	2 cut(s)	864, 910
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	3 cut(s)	439, 739, 986
HpaI	GTTAAC	1 cut(s)	864
HpaII	CCGG	3 cut(s)	308, 397, 631
HphI	GGTGA	2 cut(s)	350, 357
Hpy166II	GTNNAC	4 cut(s)	262, 391, 864, 910
Hpy188I	TCNGA	4 cut(s)	227, 373, 749, 818
Hpy188III	TCNNGA	4 cut(s)	71, 196, 983, 1072
Hpy8I	GTNNAC	4 cut(s)	262, 391, 864, 910
HpyAV	CCTTC	5 cut(s)	183, 785, 833, 890, 1108
HpyCH4III	ACNGT	3 cut(s)	338, 923, 974
HpyCH4IV	ACGT	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 680, 804, 960, 1018
HpyF3I	CTNAG	5 cut(s)	635, 803, 831, 846, 947
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	8 cut(s)	28, 102, 108, 346, 811, 880, 895, 908
KspAI	GTTAAC	1 cut(s)	864
Kzo9I	GATC	2 cut(s)	493, 749
LguI	GCTCTTC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	621
LpnPI	CCDG	8 cut(s)	27, 321, 410, 572, 644, 673, 774, 1036
Lsp1109I	GCAGC	6 cut(s)	107, 122, 521, 658, 938, 1072
LweI	GCATC	2 cut(s)	38, 807
MaeI	CTAG	3 cut(s)	513, 684, 765
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	3 cut(s)	271, 338, 1103
MalI	GATC	2 cut(s)	495, 751
MboI	GATC	2 cut(s)	493, 749
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	1 cut(s)	749
MhlI	GDGCHC	3 cut(s)	618, 695, 1023
MlsI	TGGCCA	1 cut(s)	718
MluCI	AATT	6 cut(s)	384, 414, 489, 869, 930, 994
MluNI	TGGCCA	1 cut(s)	718
MlyI	GAGTC	1 cut(s)	995
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	5 cut(s)	132, 812, 826, 866, 1021
Mox20I	TGGCCA	1 cut(s)	718
Mph1103I	ATGCAT	1 cut(s)	800
MscI	TGGCCA	1 cut(s)	718
MseI	TTAA	2 cut(s)	203, 863
MslI	CAYNNNNRTG	2 cut(s)	103, 575
Msp20I	TGGCCA	1 cut(s)	718
MspI	CCGG	3 cut(s)	308, 397, 631
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	2 cut(s)	113, 800
MwoI	GCNNNNNNNGC	5 cut(s)	95, 680, 804, 960, 1018
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	2 cut(s)	493, 749
NheI	GCTAGC	1 cut(s)	683
NlaIII	CATG	8 cut(s)	28, 102, 108, 346, 811, 880, 895, 908
NlaIV	GGNNCC	3 cut(s)	617, 692, 751
NmuCI	GTSAC	1 cut(s)	338
NsiI	ATGCAT	1 cut(s)	800
NspI	RCATGY	3 cut(s)	102, 108, 880
NspV	TTCGAA	2 cut(s)	354, 487
PaeI	GCATGC	1 cut(s)	880
PciI	ACATGT	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	166
PctI	GAATGC	2 cut(s)	113, 800
PfeI	GAWTC	2 cut(s)	439, 739
PkrI	GCNGC	7 cut(s)	97, 112, 511, 673, 953, 956, 1087
PleI	GAGTC	1 cut(s)	994
PpsI	GAGTC	1 cut(s)	994
PscI	ACATGT	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	1023
PspN4I	GGNNCC	3 cut(s)	617, 692, 751
PspPI	GGNCC	2 cut(s)	77, 318
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	749
RsaI	GTAC	5 cut(s)	103, 305, 401, 829, 1001
RsaNI	GTAC	5 cut(s)	102, 304, 400, 828, 1000
RseI	CAYNNNNRTG	2 cut(s)	103, 575
SacI	GAGCTC	1 cut(s)	1023
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	203, 863
SatI	GCNGC	7 cut(s)	96, 111, 510, 672, 952, 955, 1086
Sau3AI	GATC	2 cut(s)	493, 749
Sau96I	GGNCC	2 cut(s)	77, 318
SchI	GAGTC	1 cut(s)	995
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	3 cut(s)	618, 695, 1023
SfaNI	GCATC	2 cut(s)	38, 807
SfcI	CTRYAG	2 cut(s)	93, 970
SfuI	TTCGAA	2 cut(s)	354, 487
SinI	GGWCC	2 cut(s)	77, 318
SmiMI	CAYNNNNRTG	2 cut(s)	103, 575
SmlI	CTYRAG	5 cut(s)	299, 857, 935, 983, 1072
SmoI	CTYRAG	5 cut(s)	299, 857, 935, 983, 1072
SphI	GCATGC	1 cut(s)	880
Sse9I	AATT	6 cut(s)	384, 414, 489, 869, 930, 994
SsiI	CCGC	2 cut(s)	610, 955
SspI	AATATT	1 cut(s)	332
SspMI	CTAG	3 cut(s)	513, 684, 765
SstI	GAGCTC	1 cut(s)	1023
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	338, 923, 974
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	5 cut(s)	72, 176, 354, 487, 1004
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	6 cut(s)	384, 414, 489, 869, 930, 994
TatI	WGTACW	3 cut(s)	101, 827, 999
TauI	GCSGC	1 cut(s)	957
TfiI	GAWTC	2 cut(s)	439, 739
Tru1I	TTAA	2 cut(s)	203, 863
Tru9I	TTAA	2 cut(s)	203, 863
TscAI	CASTG	2 cut(s)	951, 979
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	6 cut(s)	95, 110, 509, 671, 951, 1085
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	677, 824
TspGWI	ACGGA	2 cut(s)	608, 927
TspRI	CASTG	2 cut(s)	951, 979
VpaK11BI	GGWCC	2 cut(s)	77, 318
XceI	RCATGY	3 cut(s)	102, 108, 880
XspI	CTAG	3 cut(s)	513, 684, 765
ZraI	GACGTC	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.