FvH4_2g23810

R3H-associated N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013427
Physical Location & Seq
Reverse (-)
19461926 .. 19465049
3124 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23810.t1

Sequence Viewer

Length: 756 bp
ATGGCGACCGCTGATGTCCTCAACAGAGAAGAAGCCCTCTTCCTCTCCTCTCCTATCCATGAACCCAGAAAAGGTGACAGTAGTGTCAAATCTCGTGGAATGTCGGTTGAGAAGAAGATTGAGATTCTGGAGAGCTTGGCTGGAACGGTTAGCAACCGCCGGTCTCGAAGATGGTTAAATGATCGCCTCTTGATGGAACTCGTTCCTCGTCTGAACGCAGAAGAAATTAGAGGCTTGTTTGCTCCACCACCTTTTGGTGATGATGTACCGCTGTCACCATTTTGCATGACCAATGTGCCAGAGTGGGACACATTTAGGAATATAGACATGGATAAACAGGCTAAGATCATTGATTCCCAAGAGAGCACTGTAACCAAGAAGGGCAATGTTGATGCTGATAAAATGGCTGTCTTGAATGCATGGCGTAGGGTGGATTCTCGAACAAGGGAGGCACTTCGCCGCAGTGTTGTTTCAGAACTTGTTGAGGGATATGAGGAGCGTATACGTGGTTATTTAACAGAGACTGGAGAAGCAGATGCAGACTCTCTCATCCTACGGGTTCAAGACCCTTTTCGTCGATTACTGCTGCATGGCGTTTGTGAGTTCTACAACTTGGTATCGGTGACGGTTACTGAATCAGAGAAAGGTAAGGCAGCTAAGTTGACCAAGATAACAAAGAAAAAAAGGTGCTCATCTGAAGTTCCAAATATCACTCTTTCCCATTTCTTGAAGATGACCAAACAAGGAGTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

252

Amino Acids

28.51

Weight (kDa)

8.92

Isoelectric Point (pI)

68.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
R3H-assoc PF13902 35 - 154 2.1e-33 R3H-associated N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 254
AccI GTMKAC 1 cut(s) 502
AciI CCGC 4 cut(s) 9, 157, 269, 460
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 3 cut(s) 71, 193, 254
AgsI TTSAA 3 cut(s) 415, 563, 730
AluBI AGCT 2 cut(s) 135, 656
AluI AGCT 2 cut(s) 135, 656
Alw21I GWGCWC 2 cut(s) 368, 692
Alw26I GTCTC 2 cut(s) 168, 515
AlwNI CAGNNNCTG 1 cut(s) 524
ApeKI GCWGC 2 cut(s) 586, 653
Asp700I GAANNNNTTC 1 cut(s) 201
AsuHPI GGTGA 4 cut(s) 86, 267, 269, 634
BauI CACGAG 1 cut(s) 93
Bbv12I GWGCWC 2 cut(s) 368, 692
BbvI GCAGC 2 cut(s) 573, 665
BccI CCATC 2 cut(s) 165, 187
BcoDI GTCTC 2 cut(s) 168, 515
BisI GCNGC 3 cut(s) 460, 587, 654
BlsI GCNGC 3 cut(s) 461, 588, 655
BmsI GCATC 2 cut(s) 382, 526
BpmI CTGGAG 2 cut(s) 149, 546
BsaAI YACGTR 1 cut(s) 506
BsaI GGTCTC 1 cut(s) 168
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 193, 254
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 529
Bse3DI GCAATG 1 cut(s) 391
BseGI GGATG 1 cut(s) 549
BseLI CCNNNNNNNGG 3 cut(s) 71, 193, 254
BseMI GCAATG 1 cut(s) 391
BseNI ACTGG 1 cut(s) 529
BseRI GAGGAG 2 cut(s) 37, 509
BseXI GCAGC 2 cut(s) 573, 665
Bsh1285I CGRYCG 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 368, 692
BsiSI CCGG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 3 cut(s) 71, 193, 254
BsmAI GTCTC 2 cut(s) 168, 515
BsmFI GGGAC 1 cut(s) 320
BsmI GAATGC 1 cut(s) 421
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 368, 692
Bsp143I GATC 2 cut(s) 181, 345
BspACI CCGC 4 cut(s) 9, 157, 269, 460
BspTNI GGTCTC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 391
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 1 cut(s) 529
BssAI RCCGGY 1 cut(s) 159
BssMI GATC 2 cut(s) 181, 345
BssNAI GTATAC 1 cut(s) 503
BssSI CACGAG 1 cut(s) 93
Bst1107I GTATAC 1 cut(s) 503
Bst2BI CACGAG 1 cut(s) 93
Bst4CI ACNGT 4 cut(s) 80, 148, 370, 628
Bst6I CTCTTC 1 cut(s) 44
BstBAI YACGTR 1 cut(s) 506
BstDEI CTNAG 2 cut(s) 342, 657
BstF5I GGATG 1 cut(s) 549
BstKTI GATC 2 cut(s) 184, 348
BstMAI GTCTC 2 cut(s) 168, 515
BstMBI GATC 2 cut(s) 181, 345
BstMCI CGRYCG 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 573, 665
BstZ17I GTATAC 1 cut(s) 503
BtsCI GGATG 1 cut(s) 549
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 2 cut(s) 366, 469
CaiI CAGNNNCTG 1 cut(s) 524
Cfr10I RCCGGY 1 cut(s) 159
Csp6I GTAC 1 cut(s) 266
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 5 cut(s) 59, 286, 328, 420, 590
CviJI RGCY 7 cut(s) 35, 135, 140, 234, 341, 407, 656
CviKI_1 RGCY 7 cut(s) 35, 135, 140, 234, 341, 407, 656
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 2 cut(s) 342, 657
DpnI GATC 2 cut(s) 183, 347
DpnII GATC 2 cut(s) 181, 345
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 717
EcoT22I ATGCAT 1 cut(s) 421
FaeI CATG 5 cut(s) 62, 289, 331, 423, 593
FaiI YATR 8 cut(s) 60, 287, 323, 329, 421, 492, 503, 591
FaqI GGGAC 1 cut(s) 320
FatI CATG 5 cut(s) 58, 285, 327, 419, 589
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 3 cut(s) 460, 587, 654
FokI GGATG 1 cut(s) 536
Fsp4HI GCNGC 3 cut(s) 460, 587, 654
GluI GCNGC 3 cut(s) 460, 587, 654
GsuI CTGGAG 2 cut(s) 149, 546
HapII CCGG 1 cut(s) 160
Hin1II CATG 5 cut(s) 62, 289, 331, 423, 593
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 5 cut(s) 124, 353, 434, 542, 635
HpaII CCGG 1 cut(s) 160
HphI GGTGA 4 cut(s) 86, 267, 269, 634
Hpy166II GTNNAC 2 cut(s) 503, 663
Hpy188I TCNGA 4 cut(s) 213, 475, 640, 697
Hpy188III TCNNGA 7 cut(s) 128, 165, 190, 412, 438, 563, 727
Hpy8I GTNNAC 2 cut(s) 503, 663
Hpy99I CGWCG 1 cut(s) 579
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 4 cut(s) 80, 148, 370, 628
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 4 cut(s) 285, 419, 539, 589
HpyF3I CTNAG 2 cut(s) 342, 657
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 5 cut(s) 62, 289, 331, 423, 593
Kzo9I GATC 2 cut(s) 181, 345
LmnI GCTCC 2 cut(s) 247, 496
LpnPI CCDG 7 cut(s) 79, 113, 126, 173, 312, 323, 510
Lsp1109I GCAGC 2 cut(s) 573, 665
LweI GCATC 2 cut(s) 382, 526
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 5 cut(s) 74, 273, 370, 622, 628
MalI GATC 2 cut(s) 183, 347
MboI GATC 2 cut(s) 181, 345
MboII GAAGA 7 cut(s) 31, 41, 124, 127, 180, 233, 742
MhlI GDGCHC 2 cut(s) 368, 692
MluCI AATT 1 cut(s) 225
MlyI GAGTC 1 cut(s) 536
Mph1103I ATGCAT 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 2 cut(s) 176, 515
MspA1I CMGCKG 2 cut(s) 11, 271
MspI CCGG 1 cut(s) 160
Mva1269I GAATGC 1 cut(s) 421
NdeII GATC 2 cut(s) 181, 345
NlaIII CATG 5 cut(s) 62, 289, 331, 423, 593
NmuCI GTSAC 3 cut(s) 74, 273, 622
NsiI ATGCAT 1 cut(s) 421
PctI GAATGC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 4 cut(s) 124, 353, 434, 635
PflMI CCANNNNNTGG 1 cut(s) 254
PkrI GCNGC 3 cut(s) 461, 588, 655
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
Ppu21I YACGTR 1 cut(s) 506
PstNI CAGNNNCTG 1 cut(s) 524
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 176, 515
SatI GCNGC 3 cut(s) 460, 587, 654
Sau3AI GATC 2 cut(s) 181, 345
SchI GAGTC 1 cut(s) 536
SduI GDGCHC 2 cut(s) 368, 692
SetI ASST 7 cut(s) 76, 137, 253, 508, 649, 658, 689
SfaNI GCATC 2 cut(s) 382, 526
Sse9I AATT 1 cut(s) 225
SsiI CCGC 4 cut(s) 9, 157, 269, 460
TaaI ACNGT 4 cut(s) 80, 148, 370, 628
TaiI ACGT 1 cut(s) 508
TaqI TCGA 3 cut(s) 166, 439, 577
TasI AATT 1 cut(s) 225
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 4 cut(s) 124, 353, 434, 635
Tru1I TTAA 2 cut(s) 176, 515
Tru9I TTAA 2 cut(s) 176, 515
TscAI CASTG 2 cut(s) 373, 469
TseFI GTSAC 3 cut(s) 74, 273, 622
TseI GCWGC 2 cut(s) 586, 653
Tsp45I GTSAC 3 cut(s) 74, 273, 622
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 2 cut(s) 373, 469
Van91I CCANNNNNTGG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.