Rw6G028750

R3H-associated N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013427
Physical Location & Seq
Reverse (-)
52810641 .. 52813294
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028750.1

Sequence Viewer

Length: 768 bp
ATGGCGACCGCTGATGTTCTCAACAGAGAGAAGCCCTTTTCCTCTCCTCTCCTATCCATGAACCCAGAAAAGGTACCATTTTTATGTGAGAGTGTCAAATCCCGTGGAATGTCGGTTGAGAAGAAGATTGAGATTCTGGAGGGGTTGGCTGGAACGGTTAGCAACCGCCGGTCTCGAAGATGGTTAAATGATCGCCTCTTGATGGAACTTGTTCCTCGTCTGAATGCAGAAGAAATTAGAGGCTTGTTTGCTCCACCACCTTTTGGTGATGATGTACCGCTGTCGCCATTTTGCATGACTAATGTGCCAGAGTGGGACACATTTAGGAATATAGACATGGATAGACAGGCTAATATTATTGATTCCCTAGAGAGCTCTTGTGAAACCAAGAAGGGCAATGTTGATGCTGATAAAATGGCTGTCTTGAATGCATGGCGTAGGGTGGATTCTCGAACAAGGGAGGCACTTCGCCGCAGCGTTGTTTCAGACCTTATTGAGGGATATGAGGAGCGTATACGTGGTTATTTAACAGAGACTGGAGAAGAAGATGCAGACTCTCTCATCCTACGGGTTCAAGACCCTTTTCGTCGTTTACTGCTGCATGGTGTTTGTGAGTTCTACAACTTGGTATCGGTGACTGTAACTGAATCAGAGAAAGGGAAGTCAGCTAAGATGACCAAGATAACAAAGAAAAAAAGGTGCTCATCTGAAGTTCCAAATATCACTCTGTCCCATTTCTTGAAGATGACCAAACAAGGAGTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
R3H R3H-assoc

Protein Analysis

255

Amino Acids

29.07

Weight (kDa)

8.23

Isoelectric Point (pI)

73.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
R3H-assoc PF13902 38 - 158 3.6e-34 R3H-associated N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 73
AccB1I GGYRCC 1 cut(s) 73
AccB7I CCANNNNNTGG 1 cut(s) 263
AccI GTMKAC 1 cut(s) 514
AciI CCGC 4 cut(s) 9, 166, 278, 472
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 2 cut(s) 75, 276
AfiI CCNNNNNNNGG 4 cut(s) 70, 202, 263, 496
AgsI TTSAA 3 cut(s) 427, 575, 742
AluBI AGCT 2 cut(s) 375, 668
AluI AGCT 2 cut(s) 375, 668
Alw21I GWGCWC 2 cut(s) 377, 704
Alw26I GTCTC 2 cut(s) 177, 527
AlwNI CAGNNNCTG 1 cut(s) 536
ApeKI GCWGC 2 cut(s) 474, 598
Asp700I GAANNNNTTC 1 cut(s) 210
Asp718I GGTACC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 278, 646
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 377
Bbv12I GWGCWC 2 cut(s) 377, 704
BbvI GCAGC 2 cut(s) 486, 585
BccI CCATC 2 cut(s) 174, 196
BcoDI GTCTC 2 cut(s) 177, 527
BfaI CTAG 1 cut(s) 368
BisI GCNGC 3 cut(s) 472, 475, 599
BlsI GCNGC 3 cut(s) 473, 476, 600
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 2 cut(s) 394, 538
BpmI CTGGAG 2 cut(s) 158, 558
BsaAI YACGTR 1 cut(s) 518
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 202, 263, 496
Bse118I RCCGGY 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 561
BseLI CCNNNNNNNGG 4 cut(s) 70, 202, 263, 496
BseMI GCAATG 1 cut(s) 403
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 2 cut(s) 36, 521
BseXI GCAGC 2 cut(s) 486, 585
Bsh1285I CGRYCG 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 73
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 377, 704
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 2 cut(s) 329, 715
BslI CCNNNNNNNGG 4 cut(s) 70, 202, 263, 496
BsmAI GTCTC 2 cut(s) 177, 527
BsmFI GGGAC 2 cut(s) 329, 715
BsmI GAATGC 2 cut(s) 229, 433
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 377, 704
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 4 cut(s) 9, 166, 278, 472
BspLI GGNNCC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 403
BsrFI RCCGGY 1 cut(s) 168
BsrI ACTGG 1 cut(s) 541
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 190
BssNAI GTATAC 1 cut(s) 515
Bst1107I GTATAC 1 cut(s) 515
Bst4CI ACNGT 2 cut(s) 157, 640
BstBAI YACGTR 1 cut(s) 518
BstDEI CTNAG 1 cut(s) 669
BstDSI CCRYGG 1 cut(s) 103
BstENI CCTNNNNNAGG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 561
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 177, 527
BstMBI GATC 1 cut(s) 190
BstMCI CGRYCG 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 486, 585
BstZ17I GTATAC 1 cut(s) 515
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 561
CaiI CAGNNNCTG 1 cut(s) 536
Cfr10I RCCGGY 1 cut(s) 168
Csp6I GTAC 2 cut(s) 74, 275
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 5 cut(s) 58, 295, 337, 432, 602
CviJI RGCY 7 cut(s) 34, 149, 243, 350, 375, 419, 668
CviKI_1 RGCY 7 cut(s) 34, 149, 243, 350, 375, 419, 668
CviQI GTAC 2 cut(s) 74, 275
DdeI CTNAG 1 cut(s) 669
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 377
Eco31I GGTCTC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 729
EcoICRI GAGCTC 1 cut(s) 375
EcoNI CCTNNNNNAGG 1 cut(s) 494
EcoT22I ATGCAT 1 cut(s) 433
EcoT38I GRGCYC 1 cut(s) 377
FaeI CATG 5 cut(s) 61, 298, 340, 435, 605
FaiI YATR 9 cut(s) 59, 85, 296, 332, 338, 433, 504, 515, 603
FaqI GGGAC 2 cut(s) 329, 715
FatI CATG 5 cut(s) 57, 294, 336, 431, 601
FblI GTMKAC 1 cut(s) 514
Fnu4HI GCNGC 3 cut(s) 472, 475, 599
FokI GGATG 1 cut(s) 548
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 3 cut(s) 472, 475, 599
FspBI CTAG 1 cut(s) 368
GluI GCNGC 3 cut(s) 472, 475, 599
GsuI CTGGAG 2 cut(s) 158, 558
HapII CCGG 1 cut(s) 169
Hin1II CATG 5 cut(s) 61, 298, 340, 435, 605
HinfI GANTC 5 cut(s) 133, 362, 446, 554, 647
HpaII CCGG 1 cut(s) 169
HphI GGTGA 2 cut(s) 278, 646
Hpy166II GTNNAC 2 cut(s) 515, 593
Hpy188I TCNGA 4 cut(s) 222, 487, 652, 709
Hpy188III TCNNGA 7 cut(s) 137, 174, 199, 424, 450, 575, 739
Hpy8I GTNNAC 2 cut(s) 515, 593
Hpy99I CGWCG 1 cut(s) 591
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 2 cut(s) 157, 640
HpyCH4IV ACGT 1 cut(s) 517
HpyCH4V TGCA 5 cut(s) 227, 294, 431, 551, 601
HpyF3I CTNAG 1 cut(s) 669
HpySE526I ACGT 1 cut(s) 517
Hsp92II CATG 5 cut(s) 61, 298, 340, 435, 605
KpnI GGTACC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 256, 508
LpnPI CCDG 7 cut(s) 78, 122, 135, 182, 321, 332, 522
Lsp1109I GCAGC 2 cut(s) 486, 585
LweI GCATC 2 cut(s) 394, 538
MaeI CTAG 1 cut(s) 368
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 2 cut(s) 634, 640
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 7 cut(s) 133, 136, 189, 242, 554, 557, 754
MhlI GDGCHC 2 cut(s) 377, 704
MluCI AATT 1 cut(s) 234
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 9 cut(s) 52, 57, 133, 206, 225, 233, 454, 490, 499
Mph1103I ATGCAT 1 cut(s) 433
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 2 cut(s) 185, 527
MslI CAYNNNNRTG 1 cut(s) 82
MspA1I CMGCKG 2 cut(s) 11, 280
MspI CCGG 1 cut(s) 169
Mva1269I GAATGC 2 cut(s) 229, 433
NdeII GATC 1 cut(s) 190
NlaIII CATG 5 cut(s) 61, 298, 340, 435, 605
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 634
NsiI ATGCAT 1 cut(s) 433
PctI GAATGC 2 cut(s) 229, 433
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 4 cut(s) 133, 362, 446, 647
PflMI CCANNNNNTGG 1 cut(s) 263
PkrI GCNGC 3 cut(s) 473, 476, 600
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
Ppu21I YACGTR 1 cut(s) 518
Psp124BI GAGCTC 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 75
PstNI CAGNNNCTG 1 cut(s) 536
RsaI GTAC 2 cut(s) 75, 276
RsaNI GTAC 2 cut(s) 74, 275
RseI CAYNNNNRTG 1 cut(s) 82
SacI GAGCTC 1 cut(s) 377
SaqAI TTAA 2 cut(s) 185, 527
SatI GCNGC 3 cut(s) 472, 475, 599
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 548
SduI GDGCHC 2 cut(s) 377, 704
SetI ASST 7 cut(s) 75, 262, 377, 492, 520, 670, 701
SfaNI GCATC 2 cut(s) 394, 538
SmiMI CAYNNNNRTG 1 cut(s) 82
Sse9I AATT 1 cut(s) 234
SsiI CCGC 4 cut(s) 9, 166, 278, 472
SspI AATATT 1 cut(s) 355
SspMI CTAG 1 cut(s) 368
SstI GAGCTC 1 cut(s) 377
TaaI ACNGT 2 cut(s) 157, 640
TaiI ACGT 1 cut(s) 520
TaqI TCGA 2 cut(s) 175, 451
TasI AATT 1 cut(s) 234
TauI GCSGC 1 cut(s) 474
TfiI GAWTC 4 cut(s) 133, 362, 446, 647
Tru1I TTAA 2 cut(s) 185, 527
Tru9I TTAA 2 cut(s) 185, 527
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 2 cut(s) 474, 598
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 1 cut(s) 74
Van91I CCANNNNNTGG 1 cut(s) 263
XagI CCTNNNNNAGG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 514
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 1 cut(s) 368
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.