RchiOBHm_Chr6g0291381

R3H-associated N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013427
Physical Location & Seq
Reverse (-)
54550938 .. 54554333
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26144

Sequence Viewer

Length: 756 bp
ATGGCGACCGCTGATGTTCTCAACAGAGAAGAAGCCCTTTTCCTCTCCTCTCCTATCCATGAACCCAGAAAAGGTGAGAGTGTCAAATCTCGTGGAATGTCGGTTGAGAAGAAGATTGAGATTCTGGAGGGGTTGGCTGGAACGGTTAGCAACCGCCGGTCTCGAAGATGGTTAAATGATCGCCTCTTGATGGAACTTGTTCCTCGTCTGAATGCAGAAGAAATTAGAGGCTTGTTTGCTCCACCACCTTTTGGTGATGATGTACCGCTGTCACCATTTTGCATGACTAATGTGCCAGAGTGGGACACATTTAGGAATATAGACATGGATAGACAGGTTAATATTATTGATTCCCTAGAGAGCTCTTGTGAAACCAAGAAGGGCAATGTTGATGCTGATAAAATGGCTGTCTTGAATGCATGGCGTAGGGTGGATTCTCAAACAAGGGAGGCACTTCGCCGCAGCGTTGTTTCAGACCTTATTGAGGGATATGAGGAGCGCATACGTGGTTATTTAACGGAGACTGGAGAAGAAGATGCAGACTCTCTCATCCTACGGGTTCAAGACCCTTTTCGTCGTTTACTGCTGCATGGTGTTTGTGAGTTCTACAACTTGGTATCGGTGACTGTAACTGAATCAGAGAAAGGGAAGTCAGCTAAGATGACCAAGATAACAAAGAAAAAAAGGTGCTCATCTGAAGTTCCAAATATCACTCTGTCCCATTTCTTGAAGATGACCAAACAAGGAGTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
R3H R3H-assoc

Protein Analysis

251

Amino Acids

28.62

Weight (kDa)

6.86

Isoelectric Point (pI)

73.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
R3H-assoc PF13902 34 - 154 1.6e-33 R3H-associated N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 251
AciI CCGC 4 cut(s) 9, 154, 266, 460
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 4 cut(s) 71, 190, 251, 484
AgsI TTSAA 3 cut(s) 415, 563, 730
AluBI AGCT 2 cut(s) 363, 656
AluI AGCT 2 cut(s) 363, 656
Alw21I GWGCWC 2 cut(s) 365, 692
Alw26I GTCTC 2 cut(s) 165, 515
ApeKI GCWGC 2 cut(s) 462, 586
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 501
AsuHPI GGTGA 4 cut(s) 86, 264, 266, 634
BanII GRGCYC 1 cut(s) 365
BauI CACGAG 1 cut(s) 90
Bbv12I GWGCWC 2 cut(s) 365, 692
BbvI GCAGC 2 cut(s) 474, 573
BccI CCATC 2 cut(s) 162, 184
BcoDI GTCTC 2 cut(s) 165, 515
BfaI CTAG 1 cut(s) 356
BisI GCNGC 3 cut(s) 460, 463, 587
BlsI GCNGC 3 cut(s) 461, 464, 588
BmsI GCATC 2 cut(s) 382, 526
BpmI CTGGAG 2 cut(s) 146, 546
BsaAI YACGTR 1 cut(s) 506
BsaI GGTCTC 1 cut(s) 165
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 190, 251, 484
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 529
Bse3DI GCAATG 1 cut(s) 391
BseGI GGATG 1 cut(s) 549
BseLI CCNNNNNNNGG 4 cut(s) 71, 190, 251, 484
BseMI GCAATG 1 cut(s) 391
BseNI ACTGG 1 cut(s) 529
BseRI GAGGAG 2 cut(s) 37, 509
BseXI GCAGC 2 cut(s) 474, 573
Bsh1285I CGRYCG 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 365, 692
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 2 cut(s) 317, 703
BslI CCNNNNNNNGG 4 cut(s) 71, 190, 251, 484
BsmAI GTCTC 2 cut(s) 165, 515
BsmFI GGGAC 2 cut(s) 317, 703
BsmI GAATGC 2 cut(s) 217, 421
Bso31I GGTCTC 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 365, 692
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 4 cut(s) 9, 154, 266, 460
BspTNI GGTCTC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 391
BsrFI RCCGGY 1 cut(s) 156
BsrI ACTGG 1 cut(s) 529
BssAI RCCGGY 1 cut(s) 156
BssMI GATC 1 cut(s) 178
BssSI CACGAG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 145, 628
BstBAI YACGTR 1 cut(s) 506
BstDEI CTNAG 1 cut(s) 657
BstENI CCTNNNNNAGG 1 cut(s) 482
BstF5I GGATG 1 cut(s) 549
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 165, 515
BstMBI GATC 1 cut(s) 178
BstMCI CGRYCG 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 474, 573
BtsCI GGATG 1 cut(s) 549
CfoI GCGC 1 cut(s) 501
Cfr10I RCCGGY 1 cut(s) 156
Csp6I GTAC 1 cut(s) 263
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 5 cut(s) 59, 283, 325, 420, 590
CviJI RGCY 6 cut(s) 35, 137, 231, 363, 407, 656
CviKI_1 RGCY 6 cut(s) 35, 137, 231, 363, 407, 656
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 1 cut(s) 657
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 717
EcoICRI GAGCTC 1 cut(s) 363
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 365
FaeI CATG 5 cut(s) 62, 286, 328, 423, 593
FaiI YATR 8 cut(s) 60, 284, 320, 326, 421, 492, 503, 591
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 2 cut(s) 317, 703
FatI CATG 5 cut(s) 58, 282, 324, 419, 589
Fnu4HI GCNGC 3 cut(s) 460, 463, 587
FokI GGATG 1 cut(s) 536
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 3 cut(s) 460, 463, 587
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 500
GluI GCNGC 3 cut(s) 460, 463, 587
GsuI CTGGAG 2 cut(s) 146, 546
HapII CCGG 1 cut(s) 157
HhaI GCGC 1 cut(s) 501
Hin1II CATG 5 cut(s) 62, 286, 328, 423, 593
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HinfI GANTC 5 cut(s) 121, 350, 434, 542, 635
HpaII CCGG 1 cut(s) 157
HphI GGTGA 4 cut(s) 86, 264, 266, 634
Hpy166II GTNNAC 1 cut(s) 581
Hpy188I TCNGA 4 cut(s) 210, 475, 640, 697
Hpy188III TCNNGA 6 cut(s) 125, 162, 187, 412, 563, 727
Hpy8I GTNNAC 1 cut(s) 581
Hpy99I CGWCG 1 cut(s) 579
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 2 cut(s) 145, 628
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 5 cut(s) 215, 282, 419, 539, 589
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 5 cut(s) 62, 286, 328, 423, 593
HspAI GCGC 1 cut(s) 499
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 2 cut(s) 244, 496
LpnPI CCDG 7 cut(s) 79, 110, 123, 170, 309, 320, 510
Lsp1109I GCAGC 2 cut(s) 474, 573
LweI GCATC 2 cut(s) 382, 526
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 3 cut(s) 270, 622, 628
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 8 cut(s) 41, 121, 124, 177, 230, 542, 545, 742
MhlI GDGCHC 2 cut(s) 365, 692
MluCI AATT 1 cut(s) 222
MlyI GAGTC 1 cut(s) 536
MnlI CCTC 9 cut(s) 53, 58, 121, 194, 213, 221, 442, 478, 487
Mph1103I ATGCAT 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 3 cut(s) 173, 339, 515
MspA1I CMGCKG 2 cut(s) 11, 268
MspI CCGG 1 cut(s) 157
Mva1269I GAATGC 2 cut(s) 217, 421
NdeII GATC 1 cut(s) 178
NlaIII CATG 5 cut(s) 62, 286, 328, 423, 593
NmuCI GTSAC 2 cut(s) 270, 622
NsiI ATGCAT 1 cut(s) 421
PctI GAATGC 2 cut(s) 217, 421
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 4 cut(s) 121, 350, 434, 635
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 3 cut(s) 461, 464, 588
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
Ppu21I YACGTR 1 cut(s) 506
Psp124BI GAGCTC 1 cut(s) 365
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SacI GAGCTC 1 cut(s) 365
SaqAI TTAA 3 cut(s) 173, 339, 515
SatI GCNGC 3 cut(s) 460, 463, 587
Sau3AI GATC 1 cut(s) 178
SchI GAGTC 1 cut(s) 536
SduI GDGCHC 2 cut(s) 365, 692
SetI ASST 8 cut(s) 76, 250, 339, 365, 480, 508, 658, 689
SfaNI GCATC 2 cut(s) 382, 526
Sse9I AATT 1 cut(s) 222
SsiI CCGC 4 cut(s) 9, 154, 266, 460
SspI AATATT 1 cut(s) 343
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 365
TaaI ACNGT 2 cut(s) 145, 628
TaiI ACGT 1 cut(s) 508
TaqI TCGA 1 cut(s) 163
TasI AATT 1 cut(s) 222
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 4 cut(s) 121, 350, 434, 635
Tru1I TTAA 3 cut(s) 173, 339, 515
Tru9I TTAA 3 cut(s) 173, 339, 515
TseFI GTSAC 2 cut(s) 270, 622
TseI GCWGC 2 cut(s) 462, 586
Tsp45I GTSAC 2 cut(s) 270, 622
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 533
Van91I CCANNNNNTGG 1 cut(s) 251
XagI CCTNNNNNAGG 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.