Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013427

Physical Location & Seq

Genomic Coordinates Reverse (-)

21234832 .. 21238586

Gene Structure 3755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G243400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGACTCCTGACATTCTTAACAGAGAAGACGGCCTTTTGCTCTCCTCTCCTCTCCTGGAACCTCGAAATGGAGAGAGTGTCAAATCTCGTGGCATGTCAATTGAGAAGAAGATTGAGTTTCTTGAGAGCTTGGCTGGAACGGTAAGCAACCGACGGTCTCGAAGATGGATTAACGATCGTCTTTTGATGGAACTTGTTCCTCGTCTAAATGCAGAAGAAATTAGAGGCTTGTTTGCTCCACCACCTTGGGGTGATGATGTACCGCTGTCACCATTTTGCATGACTAATGTACGAGAGTGGGACACATTTAGGAATATAGACATGGACAAACAGGTCCTTCGGCCACTCTCATTCACTGAAAACTTGTTTCAATCTTTTAATTCCTTGCAATCCGGTGATTTAAGATGCTATGAAGCTAATATCATTGGTTCCTCAATAAGCCCCTGTGCAAAGAATAAGGGTCCTGTTGATGCTGATAAAATGGCTGTGTTAAATGCATGGCGAAGGATTGATTCTCGAACAAGACAGGCACTTCGTCGTAGCGTTGTTTCAGAGCTTATTGAGTGCTATGAGGAGCGCATAAGGGCTTTTGTGAGAGAGACTGAAGATGGAGATGGTCTCATCCTGCAGGTTCAAGATCCTTTCCGTCGATTGTTGCTCCATGGTGTTTGTGAGTTCTACAACTTGGTGTCGGTGACGGTTATTGAATCAGAGAATGGGGAGGCCATTAAGGTGACAAAGATAACAAAGAAAATGGGGCGTTCAATTGAACTTCCAAATATCACTCTATCCCATTTCTTGAAGATGTCCAAGCAAGGAATGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

R3H R3H-assoc

Protein Analysis

277

Amino Acids

31.56

Weight (kDa)

7.61

Isoelectric Point (pI)

79.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03250 AT1G03250 AT1G03250 AT1G03250
fragaria_vesca	FvH4_2g23810
malus_domestica	MD11G1288600.v1.1
prunus_persica	Prupe.8G243400_v2.0.a1 Prupe.8G243400_v2.0.a1 Prupe.8G243400_v2.0.a1 Prupe.8G243400_v2.0.a1 Prupe.8G243400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291381
rosa_laevigata	RLG00000012118
rosa_roxburghii	Rroxscaffold_7G00176090
rosa_samantha	Rh6AG331200 Rh6BG338100 Rh6CG344400
rosa_wichuraiana	Rw6G028750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
Acc36I	ACCTGC	1 cut(s)	622
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	2 cut(s)	264, 294
AfiI	CCNNNNNNNGG	2 cut(s)	71, 251
AgsI	TTSAA	6 cut(s)	374, 638, 710, 768, 773, 805
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	3 cut(s)	132, 419, 559
AluI	AGCT	3 cut(s)	132, 419, 559
Alw26I	GTCTC	3 cut(s)	165, 596, 626
AlwI	GGATC	1 cut(s)	635
AoxI	GGCC	3 cut(s)	34, 344, 726
ArsI	GACNNNNNNTTYG	2 cut(s)	519, 551
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	582
AspS9I	GGNCC	2 cut(s)	337, 464
AsuHPI	GGTGA	5 cut(s)	264, 266, 410, 709, 748
AvaII	GGWCC	2 cut(s)	337, 464
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	36
BccI	CCATC	4 cut(s)	162, 184, 605, 611
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	3 cut(s)	165, 596, 626
BfmI	CTRYAG	1 cut(s)	629
BfuAI	ACCTGC	1 cut(s)	622
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	2 cut(s)	337, 464
BmgT120I	GGNCC	2 cut(s)	337, 464
BmiI	GGNNCC	3 cut(s)	63, 433, 465
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	398, 463
BpiI	GAAGAC	1 cut(s)	36
BplI	GAGNNNNNCTC	2 cut(s)	606, 638
BpuEI	CTTGAG	1 cut(s)	146
BsaI	GGTCTC	2 cut(s)	165, 626
BsaJI	CCNNGG	2 cut(s)	248, 664
BsaWI	WCCGGW	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 251
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	248, 664
BseGI	GGATG	1 cut(s)	624
BseLI	CCNNNNNNNGG	2 cut(s)	71, 251
BseRI	GAGGAG	3 cut(s)	37, 42, 590
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	3 cut(s)	36, 346, 728
BsiEI	CGRYCG	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	71, 251
BsmAI	GTCTC	3 cut(s)	165, 596, 626
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	3 cut(s)	36, 346, 728
Bso31I	GGTCTC	2 cut(s)	165, 626
Bsp143I	GATC	2 cut(s)	178, 640
Bsp19I	CCATGG	1 cut(s)	664
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	3 cut(s)	36, 346, 728
BspLI	GGNNCC	3 cut(s)	63, 433, 465
BspMAI	CTGCAG	1 cut(s)	633
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	1 cut(s)	635
BspTNI	GGTCTC	2 cut(s)	165, 626
BssECI	CCNNGG	2 cut(s)	248, 664
BssMI	GATC	2 cut(s)	178, 640
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	248, 664
Bst2BI	CACGAG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	3 cut(s)	145, 159, 703
BstDSI	CCRYGG	1 cut(s)	664
BstF5I	GGATG	1 cut(s)	624
BstHHI	GCGC	1 cut(s)	582
BstKTI	GATC	2 cut(s)	181, 643
BstMAI	GTCTC	3 cut(s)	165, 596, 626
BstMBI	GATC	2 cut(s)	178, 640
BstMCI	CGRYCG	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	629
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	3 cut(s)	36, 346, 728
BtgI	CCRYGG	1 cut(s)	664
BtsCI	GGATG	1 cut(s)	624
BtsIMutI	CAGTG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	622
CfoI	GCGC	1 cut(s)	582
Cfr13I	GGNCC	2 cut(s)	337, 464
Csp6I	GTAC	2 cut(s)	263, 293
CspCI	CAANNNNNGTGG	3 cut(s)	73, 108, 806
CviAII	CATG	5 cut(s)	97, 283, 325, 501, 665
CviQI	GTAC	2 cut(s)	263, 293
DpnI	GATC	2 cut(s)	180, 642
DpnII	GATC	2 cut(s)	178, 640
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	248, 664
Eco31I	GGTCTC	2 cut(s)	165, 626
Eco47I	GGWCC	2 cut(s)	337, 464
Eco57I	CTGAAG	1 cut(s)	627
EcoO109I	RGGNCCY	2 cut(s)	337, 464
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	248, 664
EcoT22I	ATGCAT	1 cut(s)	502
ErhI	CCWWGG	2 cut(s)	248, 664
FaeI	CATG	5 cut(s)	100, 286, 328, 504, 668
FaiI	YATR	9 cut(s)	98, 284, 320, 326, 414, 502, 573, 584, 666
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	5 cut(s)	96, 282, 324, 500, 664
FokI	GGATG	1 cut(s)	611
GlaI	GCGC	1 cut(s)	581
HaeIII	GGCC	3 cut(s)	36, 346, 728
HapII	CCGG	1 cut(s)	396
HhaI	GCGC	1 cut(s)	582
Hin1II	CATG	5 cut(s)	100, 286, 328, 504, 668
Hin6I	GCGC	1 cut(s)	580
HinP1I	GCGC	1 cut(s)	580
HinfI	GANTC	3 cut(s)	7, 515, 710
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	5 cut(s)	264, 266, 410, 709, 748
Hpy188I	TCNGA	2 cut(s)	556, 715
Hpy188III	TCNNGA	6 cut(s)	11, 125, 162, 519, 638, 802
Hpy99I	CGWCG	3 cut(s)	159, 543, 654
HpyAV	CCTTC	2 cut(s)	350, 501
HpyCH4III	ACNGT	3 cut(s)	145, 159, 703
HpyCH4V	TGCA	6 cut(s)	215, 282, 391, 452, 500, 631
Hsp92II	CATG	5 cut(s)	100, 286, 328, 504, 668
HspAI	GCGC	1 cut(s)	580
Kzo9I	GATC	2 cut(s)	178, 640
LmnI	GCTCC	3 cut(s)	244, 577, 666
LweI	GCATC	2 cut(s)	398, 463
MaeIII	GTNAC	3 cut(s)	270, 697, 736
MalI	GATC	2 cut(s)	180, 642
MboI	GATC	2 cut(s)	178, 640
MboII	GAAGA	7 cut(s)	41, 121, 124, 177, 230, 620, 817
MfeI	CAATTG	2 cut(s)	102, 768
MflI	RGATCY	1 cut(s)	640
MluCI	AATT	4 cut(s)	102, 222, 382, 768
MnlI	CCTC	8 cut(s)	58, 63, 75, 213, 221, 445, 568, 718
Mph1103I	ATGCAT	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	6 cut(s)	21, 174, 381, 404, 494, 732
MslI	CAYNNNNRTG	1 cut(s)	734
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	2 cut(s)	102, 768
MvaI	CCWGG	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	664
NdeII	GATC	2 cut(s)	178, 640
NlaIII	CATG	5 cut(s)	100, 286, 328, 504, 668
NlaIV	GGNNCC	3 cut(s)	63, 433, 465
NmuCI	GTSAC	3 cut(s)	270, 697, 736
NsiI	ATGCAT	1 cut(s)	502
NspI	RCATGY	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	515, 710
PfoI	TCCNGGA	1 cut(s)	57
Ple19I	CGATCG	1 cut(s)	181
PpuMI	RGGWCCY	2 cut(s)	337, 464
Psp5II	RGGWCCY	2 cut(s)	337, 464
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	63, 433, 465
PspPI	GGNCC	2 cut(s)	337, 464
PspPPI	RGGWCCY	2 cut(s)	337, 464
PstI	CTGCAG	1 cut(s)	633
PsuI	RGATCY	1 cut(s)	640
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	2 cut(s)	264, 294
RsaNI	GTAC	2 cut(s)	263, 293
RseI	CAYNNNNRTG	1 cut(s)	734
SaqAI	TTAA	6 cut(s)	21, 174, 381, 404, 494, 732
Sau3AI	GATC	2 cut(s)	178, 640
Sau96I	GGNCC	2 cut(s)	337, 464
SbfI	CCTGCAGG	1 cut(s)	633
ScrFI	CCNGG	1 cut(s)	59
SdaI	CCTGCAGG	1 cut(s)	633
SetI	ASST	8 cut(s)	67, 134, 250, 339, 421, 561, 636, 738
SfaNI	GCATC	2 cut(s)	398, 463
SfcI	CTRYAG	1 cut(s)	629
SinI	GGWCC	2 cut(s)	337, 464
SmiMI	CAYNNNNRTG	1 cut(s)	734
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse8387I	CCTGCAGG	1 cut(s)	633
Sse9I	AATT	4 cut(s)	102, 222, 382, 768
SsiI	CCGC	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	2 cut(s)	248, 664
TaaI	ACNGT	3 cut(s)	145, 159, 703
TaqI	TCGA	4 cut(s)	67, 163, 520, 652
TasI	AATT	4 cut(s)	102, 222, 382, 768
TfiI	GAWTC	2 cut(s)	515, 710
Tru1I	TTAA	6 cut(s)	21, 174, 381, 404, 494, 732
Tru9I	TTAA	6 cut(s)	21, 174, 381, 404, 494, 732
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	3 cut(s)	270, 697, 736
Tsp45I	GTSAC	3 cut(s)	270, 697, 736
TspDTI	ATGAA	1 cut(s)	429
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	1 cut(s)	364
VpaK11BI	GGWCC	2 cut(s)	337, 464
XceI	RCATGY	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.