Rroxscaffold_7G00176090

R3H-associated N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013427
Physical Location & Seq
Forward (+)
15575695 .. 15578851
3157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176090.1

Sequence Viewer

Length: 756 bp
ATGGCGACCGCTGATGTTCTCAACAGAGAAGAAGCCCTTTTCCTCTCCTCTCCTATCCATGAACCCAGAAAAGGTGAGAGTGTCAAATCTCGTGGAATGTCGGTTGAGAAGAAGATTGAGATTCTGGAGGGGTTGGCTGGAACGGTTAGTAACCGCCGGTCTCGAAGATGGTTAAATGATCGCCTCTTGATGGAACTTGTTCCTCGTCTGAATGCAGAAGAAATTAGAGGCTTGTTTGCTCCACCACCTTTTGGTGATGATGTACCACTGTCACCATTTTGCATGACTAATGTGCCAGAGTGGGACACATTTAGGAATATAGACATGGATAGACAGGCTAATATTATTGATTCCCTGGAGAGCTCTTGTGAAACCAAGAAGGGCAATGTTGATGCTGATAAAATGGCTGTCTTGAATGCATGGCGTAGGGTGGATTCTCGAACAAGGGAGGCACTTCGCCGCAGCGTTGTTTCAGACCTTATTGAGGGATATGAGGAGCGTATACGTGGTTATTTAACGGAGACTGGAGAAGAAGATGCAGACTCTCTCATCCTACGGGTTCAAGACCCTTTTCGTCGTTTACTGCTGCATGGTGTCTGTGAGTTCTACAACTTGGTATCGGTGACTGTAACTGAATCAGAGAAAGGGAAGTCAGCTAAGATGACCAAGATAACAAAGAAAAAAAGGTGCTCATCTGAAGTTCCAAATATCACTCTGTCCCATTTCTTGAAGATGACCAAACAAGGAGTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
R3H R3H-assoc

Protein Analysis

251

Amino Acids

28.62

Weight (kDa)

7.66

Isoelectric Point (pI)

74.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
R3H-assoc PF13902 34 - 154 3.4e-34 R3H-associated N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 251
AccI GTMKAC 1 cut(s) 502
AciI CCGC 3 cut(s) 9, 154, 460
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 4 cut(s) 71, 190, 251, 484
AgsI TTSAA 3 cut(s) 415, 563, 730
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 2 cut(s) 363, 656
AluI AGCT 2 cut(s) 363, 656
Alw21I GWGCWC 2 cut(s) 365, 692
Alw26I GTCTC 2 cut(s) 165, 515
ApeKI GCWGC 2 cut(s) 462, 586
Asp700I GAANNNNTTC 1 cut(s) 198
AsuHPI GGTGA 4 cut(s) 86, 264, 266, 634
BanII GRGCYC 1 cut(s) 365
BauI CACGAG 1 cut(s) 90
Bbv12I GWGCWC 2 cut(s) 365, 692
BbvI GCAGC 2 cut(s) 474, 573
BccI CCATC 2 cut(s) 162, 184
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 2 cut(s) 165, 515
BisI GCNGC 3 cut(s) 460, 463, 587
BlsI GCNGC 3 cut(s) 461, 464, 588
Bme1390I CCNGG 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 2 cut(s) 382, 526
BpmI CTGGAG 3 cut(s) 146, 377, 546
BsaAI YACGTR 1 cut(s) 506
BsaI GGTCTC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 354
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 190, 251, 484
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 529
Bse3DI GCAATG 1 cut(s) 391
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 549
BseLI CCNNNNNNNGG 4 cut(s) 71, 190, 251, 484
BseMI GCAATG 1 cut(s) 391
BseNI ACTGG 1 cut(s) 529
BseRI GAGGAG 2 cut(s) 37, 509
BseXI GCAGC 2 cut(s) 474, 573
Bsh1285I CGRYCG 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 365, 692
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 2 cut(s) 317, 703
BslI CCNNNNNNNGG 4 cut(s) 71, 190, 251, 484
BsmAI GTCTC 2 cut(s) 165, 515
BsmFI GGGAC 2 cut(s) 317, 703
BsmI GAATGC 2 cut(s) 217, 421
Bso31I GGTCTC 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 365, 692
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 3 cut(s) 9, 154, 460
BspTNI GGTCTC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 391
BsrFI RCCGGY 1 cut(s) 156
BsrI ACTGG 1 cut(s) 529
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 1 cut(s) 178
BssNAI GTATAC 1 cut(s) 503
BssSI CACGAG 1 cut(s) 90
Bst1107I GTATAC 1 cut(s) 503
Bst2BI CACGAG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 3 cut(s) 145, 270, 628
BstBAI YACGTR 1 cut(s) 506
BstDEI CTNAG 1 cut(s) 657
BstENI CCTNNNNNAGG 1 cut(s) 482
BstF5I GGATG 1 cut(s) 549
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 165, 515
BstMBI GATC 1 cut(s) 178
BstMCI CGRYCG 1 cut(s) 9
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 474, 573
BstZ17I GTATAC 1 cut(s) 503
BtsCI GGATG 1 cut(s) 549
BtsIMutI CAGTG 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 156
Csp6I GTAC 1 cut(s) 263
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 5 cut(s) 59, 283, 325, 420, 590
CviJI RGCY 7 cut(s) 35, 137, 231, 338, 363, 407, 656
CviKI_1 RGCY 7 cut(s) 35, 137, 231, 338, 363, 407, 656
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 1 cut(s) 657
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 717
EcoICRI GAGCTC 1 cut(s) 363
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 365
FaeI CATG 5 cut(s) 62, 286, 328, 423, 593
FaiI YATR 8 cut(s) 60, 284, 320, 326, 421, 492, 503, 591
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 2 cut(s) 317, 703
FatI CATG 5 cut(s) 58, 282, 324, 419, 589
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 3 cut(s) 460, 463, 587
FokI GGATG 1 cut(s) 536
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 3 cut(s) 460, 463, 587
GluI GCNGC 3 cut(s) 460, 463, 587
GsuI CTGGAG 3 cut(s) 146, 377, 546
HapII CCGG 1 cut(s) 157
Hin1II CATG 5 cut(s) 62, 286, 328, 423, 593
HinfI GANTC 5 cut(s) 121, 350, 434, 542, 635
HpaII CCGG 1 cut(s) 157
HphI GGTGA 4 cut(s) 86, 264, 266, 634
Hpy166II GTNNAC 2 cut(s) 503, 581
Hpy188I TCNGA 4 cut(s) 210, 475, 640, 697
Hpy188III TCNNGA 7 cut(s) 125, 162, 187, 412, 438, 563, 727
Hpy8I GTNNAC 2 cut(s) 503, 581
Hpy99I CGWCG 1 cut(s) 579
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 3 cut(s) 145, 270, 628
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 5 cut(s) 215, 282, 419, 539, 589
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 5 cut(s) 62, 286, 328, 423, 593
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 2 cut(s) 244, 496
LpnPI CCDG 9 cut(s) 79, 110, 123, 170, 309, 320, 341, 368, 510
Lsp1109I GCAGC 2 cut(s) 474, 573
LweI GCATC 2 cut(s) 382, 526
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 4 cut(s) 149, 270, 622, 628
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 8 cut(s) 41, 121, 124, 177, 230, 542, 545, 742
MhlI GDGCHC 2 cut(s) 365, 692
MluCI AATT 1 cut(s) 222
MlyI GAGTC 1 cut(s) 536
MnlI CCTC 9 cut(s) 53, 58, 121, 194, 213, 221, 442, 478, 487
Mph1103I ATGCAT 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 2 cut(s) 173, 515
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 1 cut(s) 356
Mva1269I GAATGC 2 cut(s) 217, 421
MvaI CCWGG 1 cut(s) 356
NdeII GATC 1 cut(s) 178
NlaIII CATG 5 cut(s) 62, 286, 328, 423, 593
NmuCI GTSAC 2 cut(s) 270, 622
NsiI ATGCAT 1 cut(s) 421
PctI GAATGC 2 cut(s) 217, 421
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 4 cut(s) 121, 350, 434, 635
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 3 cut(s) 461, 464, 588
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
Ppu21I YACGTR 1 cut(s) 506
Psp124BI GAGCTC 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SacI GAGCTC 1 cut(s) 365
SaqAI TTAA 2 cut(s) 173, 515
SatI GCNGC 3 cut(s) 460, 463, 587
Sau3AI GATC 1 cut(s) 178
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 2 cut(s) 365, 692
SetI ASST 7 cut(s) 76, 250, 365, 480, 508, 658, 689
SfaNI GCATC 2 cut(s) 382, 526
Sse9I AATT 1 cut(s) 222
SsiI CCGC 3 cut(s) 9, 154, 460
SspI AATATT 1 cut(s) 343
SstI GAGCTC 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 3 cut(s) 145, 270, 628
TaiI ACGT 1 cut(s) 508
TaqI TCGA 2 cut(s) 163, 439
TasI AATT 1 cut(s) 222
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 4 cut(s) 121, 350, 434, 635
Tru1I TTAA 2 cut(s) 173, 515
Tru9I TTAA 2 cut(s) 173, 515
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 2 cut(s) 270, 622
TseI GCWGC 2 cut(s) 462, 586
Tsp45I GTSAC 2 cut(s) 270, 622
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 1 cut(s) 273
Van91I CCANNNNNTGG 1 cut(s) 251
XagI CCTNNNNNAGG 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.