FvH4_2g23990

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0018379
Physical Location & Seq
Reverse (-)
19601174 .. 19602966
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23990.t1

Sequence Viewer

Length: 942 bp
ATGGCTTTGGCCAATATTCGAATGCTAATTCTTTCTCTTATGTTGGCTTTGTGTGGAGTCTGCTTTGGTGCCATTTACCAAGTCGGTGACTCCAGCGGGTGGACAGACAAAGGTGTTGACTATAAGATCTGGGCATCCTACAGAAACTTTACCGTTGGAGACGTTCTTCATTTCAAGTATGATAGAAACGAGAACAATCTGGTGAGAGTGGTGCATAAAGGATTCAGCTCATGCAACCCTGAGCATGAAATCTACAAGTTGCGCAGCGGCGATGATTATATACGCTTGAATAGACCTGGAAACTTCTTCTTCATTTGTACTGTCAATGAACATTGCCGCTCCGGCCAGAAGATTCATGTTAGCGTTTCACAATCGACAGTTCCAAGTGTCAGTCCTGGCACAGCCCCAACCCTATCGCCGGTACCCAGTTCTAGTCCAACACAGACTCCAGTTGCCAGCCCAACATCTCCCACAGCCACACCGGCTGCCACCCCGGAAGTTGCACTCATTTCAGCCCCAGAAGCTGCACCCTTTGCCGCCCGGAGAACTGCACCCTTTGCCGCCCCGCAAGCTGCACCCTTTGCTGCCCCCATTGCCGCCCCAAAAACTGCACCCATTGCCGCCCCAGAAGCTGCACCCATTTCCGCCCCAGAGGCTGCATCCATTTCCGCCCCAAAATCTGCACCGGCTGCTGCTCCCACTGCTGCCCCTAAAGCTGCACCGACTCCTAACACCTCTCCTAGTGCTGCCCCAGCTACTCCCCCAATGGTTGAAGGACCGCCAACACCAAGTGAAGACTTTCCTCCTGATATTCCATTAGTACTGAACCCAGCGCCTAAGGCAGCTCCTTCTAACCCGCCCAAGAAGAGCAGTGCCCAATCCATTCACTCTTCAATGCCGTTCTTGATGGCAATGGTGTTTATTGTCTATATAGTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

314

Amino Acids

32.57

Weight (kDa)

8.57

Isoelectric Point (pI)

62.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 116 2.8e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23990
rosa_chinensis RchiOBHm_Chr6g0291711
rosa_laevigata RLG00000012096
rosa_roxburghii Rroxscaffold_7G00175830
rosa_rugosa Rorug06G0221000
rosa_samantha Rh6AG333600 Rh6BG340600 Rh6CG346800 Rh6DG334000
rosa_wichuraiana Rw6G029050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 263
Acc65I GGTACC 1 cut(s) 421
AccB1I GGYRCC 2 cut(s) 68, 421
AccB7I CCANNNNNTGG 1 cut(s) 99
AccBSI CCGCTC 1 cut(s) 339
AcoI YGGCCR 2 cut(s) 9, 343
AdeI CACNNNGTG 1 cut(s) 791
AfaI GTAC 3 cut(s) 319, 423, 822
AfiI CCNNNNNNNGG 2 cut(s) 99, 418
AgsI TTSAA 4 cut(s) 175, 289, 773, 894
AjnI CCWGG 2 cut(s) 295, 394
AluBI AGCT 7 cut(s) 228, 524, 572, 632, 716, 755, 845
AluI AGCT 7 cut(s) 228, 524, 572, 632, 716, 755, 845
Alw26I GTCTC 1 cut(s) 153
AlwNI CAGNNNCTG 3 cut(s) 524, 632, 656
AoxI GGCC 2 cut(s) 9, 343
Asp700I GAANNNNTTC 1 cut(s) 798
Asp718I GGTACC 1 cut(s) 421
AspLEI GCGC 2 cut(s) 264, 835
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 2 cut(s) 494, 541
AsuHPI GGTGA 2 cut(s) 98, 214
AsuII TTCGAA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 776
AxyI CCTNAGG 1 cut(s) 837
BaeGI GKGCMC 1 cut(s) 877
BalI TGGCCA 1 cut(s) 11
BanI GGYRCC 2 cut(s) 68, 421
BbsI GAAGAC 1 cut(s) 801
BccI CCATC 1 cut(s) 901
BceAI ACGGC 1 cut(s) 883
BciT130I CCWGG 2 cut(s) 297, 396
BcnI CCSGG 2 cut(s) 494, 541
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 2 cut(s) 432, 741
BfmI CTRYAG 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 836
BglI GCCNNNNNGGC 3 cut(s) 342, 482, 653
BglII AGATCT 1 cut(s) 126
BmcAI AGTACT 1 cut(s) 822
Bme1390I CCNGG 4 cut(s) 297, 396, 494, 541
Bme18I GGWCC 1 cut(s) 776
BmgT120I GGNCC 1 cut(s) 776
BmiI GGNNCC 2 cut(s) 70, 423
BmrFI CCNGG 4 cut(s) 297, 396, 494, 541
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 2 cut(s) 143, 668
BmuI ACTGGG 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 801
BpmI CTGGAG 2 cut(s) 76, 432
Bpu10I CCTNAGC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 19
BpuMI CCSGG 2 cut(s) 494, 541
BsaJI CCNNGG 1 cut(s) 492
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 418
Bse118I RCCGGY 3 cut(s) 418, 481, 685
Bse1I ACTGG 2 cut(s) 426, 449
Bse21I CCTNAGG 1 cut(s) 837
Bse3DI GCAATG 4 cut(s) 331, 591, 615, 918
BseBI CCWGG 2 cut(s) 297, 396
BseDI CCNNGG 1 cut(s) 492
BseGI GGATG 2 cut(s) 134, 659
BseLI CCNNNNNNNGG 2 cut(s) 99, 418
BseMI GCAATG 4 cut(s) 331, 591, 615, 918
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 426, 449
BseSI GKGCMC 1 cut(s) 877
BseYI CCCAGC 2 cut(s) 751, 829
BsgI GTGCAG 7 cut(s) 510, 534, 558, 594, 618, 666, 702
BshFI GGCC 2 cut(s) 11, 345
BshNI GGYRCC 2 cut(s) 68, 421
BsiSI CCGG 6 cut(s) 342, 419, 482, 494, 541, 686
BslI CCNNNNNNNGG 2 cut(s) 99, 418
BsmAI GTCTC 1 cut(s) 153
BsmBI CGTCTC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 27
BsnI GGCC 2 cut(s) 11, 345
Bsp119I TTCGAA 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 877
Bsp143I GATC 1 cut(s) 126
BspANI GGCC 2 cut(s) 11, 345
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 70, 423
BspQI GCTCTTC 1 cut(s) 860
BspT104I TTCGAA 1 cut(s) 19
BspT107I GGYRCC 2 cut(s) 68, 421
BsrBI CCGCTC 1 cut(s) 339
BsrDI GCAATG 4 cut(s) 331, 591, 615, 918
BsrFI RCCGGY 3 cut(s) 418, 481, 685
BsrI ACTGG 2 cut(s) 426, 449
BssAI RCCGGY 3 cut(s) 418, 481, 685
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 297, 396
Bst4CI ACNGT 3 cut(s) 154, 322, 379
Bst6I CTCTTC 2 cut(s) 860, 895
BstAPI GCANNNNNTGC 5 cut(s) 533, 557, 581, 617, 689
BstBI TTCGAA 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 457, 570
BstDEI CTNAG 2 cut(s) 240, 837
BstF5I GGATG 2 cut(s) 134, 659
BstH2I RGCGCY 1 cut(s) 836
BstHHI GCGC 2 cut(s) 264, 835
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 1 cut(s) 126
BstNI CCWGG 2 cut(s) 297, 396
BstSCI CCNGG 4 cut(s) 295, 394, 492, 539
BstSFI CTRYAG 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 877
BstV2I GAAGAC 1 cut(s) 801
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
Bsu36I CCTNAGG 1 cut(s) 837
BsuRI GGCC 2 cut(s) 11, 345
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 2 cut(s) 134, 659
BtsI GCAGTG 2 cut(s) 699, 877
BtsIMutI CAGTG 2 cut(s) 699, 877
Cac8I GCNNGC 2 cut(s) 457, 570
CaiI CAGNNNCTG 3 cut(s) 524, 632, 656
CfoI GCGC 2 cut(s) 264, 835
Cfr10I RCCGGY 3 cut(s) 418, 481, 685
Cfr13I GGNCC 1 cut(s) 776
Csp6I GTAC 3 cut(s) 318, 422, 821
CviAII CATG 3 cut(s) 231, 245, 356
CviQI GTAC 3 cut(s) 318, 422, 821
DdeI CTNAG 2 cut(s) 240, 837
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
DraIII CACNNNGTG 1 cut(s) 791
EaeI YGGCCR 2 cut(s) 9, 343
Eam1104I CTCTTC 2 cut(s) 860, 895
EarI CTCTTC 2 cut(s) 860, 895
EciI GGCGGA 2 cut(s) 634, 658
Eco47I GGWCC 1 cut(s) 776
Eco81I CCTNAGG 1 cut(s) 837
EcoRII CCWGG 2 cut(s) 295, 394
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 3 cut(s) 234, 248, 359
FatI CATG 3 cut(s) 230, 244, 355
FauI CCCGC 3 cut(s) 89, 573, 864
FokI GGATG 2 cut(s) 121, 646
FspBI CTAG 2 cut(s) 432, 741
FspI TGCGCA 1 cut(s) 263
GlaI GCGC 2 cut(s) 263, 834
GsaI CCCAGC 2 cut(s) 755, 833
GsuI CTGGAG 2 cut(s) 76, 432
HaeII RGCGCY 1 cut(s) 836
HaeIII GGCC 2 cut(s) 11, 345
HapII CCGG 6 cut(s) 342, 419, 482, 494, 541, 686
HhaI GCGC 2 cut(s) 264, 835
Hin1II CATG 3 cut(s) 234, 248, 359
Hin6I GCGC 2 cut(s) 262, 833
HinP1I GCGC 2 cut(s) 262, 833
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 6 cut(s) 57, 89, 222, 352, 445, 724
HpaII CCGG 6 cut(s) 342, 419, 482, 494, 541, 686
HphI GGTGA 2 cut(s) 98, 214
Hpy166II GTNNAC 2 cut(s) 102, 118
Hpy188I TCNGA 1 cut(s) 941
Hpy188III TCNNGA 2 cut(s) 806, 904
Hpy8I GTNNAC 2 cut(s) 102, 118
HpyAV CCTTC 2 cut(s) 767, 858
HpyCH4III ACNGT 3 cut(s) 154, 322, 379
HpyCH4IV ACGT 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 240, 837
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 3 cut(s) 234, 248, 359
HspAI GCGC 2 cut(s) 262, 833
KpnI GGTACC 1 cut(s) 425
Kzo9I GATC 1 cut(s) 126
LguI GCTCTTC 1 cut(s) 860
LmnI GCTCC 3 cut(s) 344, 700, 850
LweI GCATC 2 cut(s) 143, 668
MaeI CTAG 2 cut(s) 432, 741
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 86
MalI GATC 1 cut(s) 128
MbiI CCGCTC 1 cut(s) 339
MboI GATC 1 cut(s) 126
MboII GAAGA 7 cut(s) 158, 298, 301, 361, 806, 877, 882
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 877
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 1 cut(s) 27
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 4 cut(s) 66, 83, 439, 718
MmeI TCCRAC 2 cut(s) 136, 461
MnlI CCTC 3 cut(s) 646, 745, 813
Mox20I TGGCCA 1 cut(s) 11
MroXI GAANNNNTTC 1 cut(s) 798
MscI TGGCCA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 11
MspA1I CMGCKG 2 cut(s) 96, 267
MspI CCGG 6 cut(s) 342, 419, 482, 494, 541, 686
MspR9I CCNGG 4 cut(s) 297, 396, 494, 541
Mva1269I GAATGC 1 cut(s) 27
MvaI CCWGG 2 cut(s) 297, 396
NciI CCSGG 2 cut(s) 494, 541
NdeII GATC 1 cut(s) 126
NlaIII CATG 3 cut(s) 234, 248, 359
NlaIV GGNNCC 2 cut(s) 70, 423
NmuCI GTSAC 1 cut(s) 86
NsbI TGCGCA 1 cut(s) 263
NspV TTCGAA 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 860
PctI GAATGC 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 2 cut(s) 222, 352
PflMI CCANNNNNTGG 1 cut(s) 99
PleI GAGTC 4 cut(s) 65, 83, 439, 718
PpsI GAGTC 4 cut(s) 65, 83, 439, 718
Psp6I CCWGG 2 cut(s) 295, 394
PspFI CCCAGC 2 cut(s) 751, 829
PspGI CCWGG 2 cut(s) 295, 394
PspN4I GGNNCC 2 cut(s) 70, 423
PspPI GGNCC 1 cut(s) 776
PstNI CAGNNNCTG 3 cut(s) 524, 632, 656
PsuI RGATCY 1 cut(s) 126
RsaI GTAC 3 cut(s) 319, 423, 822
RsaNI GTAC 3 cut(s) 318, 422, 821
SapI GCTCTTC 1 cut(s) 860
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 776
ScaI AGTACT 1 cut(s) 822
SchI GAGTC 4 cut(s) 66, 83, 439, 718
ScrFI CCNGG 4 cut(s) 297, 396, 494, 541
SduI GDGCHC 1 cut(s) 877
SfaNI GCATC 2 cut(s) 143, 668
SfcI CTRYAG 1 cut(s) 139
SfuI TTCGAA 1 cut(s) 19
SinI GGWCC 1 cut(s) 776
Sse9I AATT 1 cut(s) 27
SspI AATATT 1 cut(s) 16
SspMI CTAG 2 cut(s) 432, 741
StyD4I CCNGG 4 cut(s) 295, 394, 492, 539
TaaI ACNGT 3 cut(s) 154, 322, 379
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 19, 374
TasI AATT 1 cut(s) 27
TatI WGTACW 2 cut(s) 317, 820
TauI GCSGC 6 cut(s) 270, 339, 539, 563, 599, 623
TfiI GAWTC 2 cut(s) 222, 352
TscAI CASTG 2 cut(s) 706, 877
TseFI GTSAC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 5 cut(s) 158, 261, 301, 342, 344
TspRI CASTG 2 cut(s) 706, 877
Van91I CCANNNNNTGG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 2 cut(s) 432, 741
ZrmI AGTACT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.