RLG00000012096

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018379
Physical Location & Seq
Forward (+)
15214207 .. 15215427
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012096

Sequence Viewer

Length: 780 bp
ATGGCTCTGGCCAATATTCCAATGCTTCTTTCCCTTGTGATGGCTTTGTGTGGAGTCTGCTTTGGTACCATTTACCAAGTGGGTGACTCTAACGGGTGGACAGACAAAGGTGTTGACTATAAGACCTGGGCATCTACCAAAAACTTCACCGTTGGAGACATTCTTCATTTTAAGTATGACAGAAAGGAGAACAATGTAGTGAGAGTGTTGCATAAAGCATTTAGGTCATGCAACCCAAAGGGTAAAATCTACAAGACGCGCACCGGCGACGATTATATACGCTTGAATAGACCTGGAAACTTCTTCTTCATTTGTAGTGTCAATGGACATTGCCGCTCTGGCCAGAAGGTTCATGTTAGCGTTTCTAAGTCAGTTCCAAGTGCCAGTCCTGGAACAGCCCCAACCCTACCACCGGTACCCAGTTCTAGTCCACTTCGGAGTCCAATTGCCAGCCCAACATCTCCCACAGCCGGGTCGACTGGCGCCCCGAAAGGTGCACCCTTTGCCTCCCCAAAAGGTGCACCCATTGCCGCCCCAAAAGCTGCACCCACTGCTTCCCCTACTGCGGCCCCTAAAGCCGCCCCCACTGCTGCCCCAACAACTCCCCCAACGGCCGATGGACCACCAAGTGCAGACTCTCCTCCTGCTCTTCCTATAGAACTGATCCCAGCGCCTAAGGCAGCTCCTCCTAACCCGCCCAAGAAGAGCAGTGCTCAATCCATTCACTCCTCTATGCTGTTCTTGATGGCAATGGGGTTTATTGCCTATATTGTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

260

Amino Acids

26.89

Weight (kDa)

9.82

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 115 8.4e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23990
rosa_chinensis RchiOBHm_Chr6g0291711
rosa_laevigata RLG00000012096
rosa_roxburghii Rroxscaffold_7G00175830
rosa_rugosa Rorug06G0221000
rosa_samantha Rh6AG333600 Rh6BG340600 Rh6CG346800 Rh6DG334000
rosa_wichuraiana Rw6G029050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 65, 415
AccB1I GGYRCC 3 cut(s) 65, 415, 482
AccBSI CCGCTC 1 cut(s) 336
AccI GTMKAC 1 cut(s) 476
AccII CGCG 1 cut(s) 259
AciI CCGC 5 cut(s) 334, 531, 566, 579, 695
AclWI GGATC 1 cut(s) 658
AcoI YGGCCR 3 cut(s) 9, 340, 612
AcyI GRCGYC 1 cut(s) 483
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 2 cut(s) 67, 417
AfiI CCNNNNNNNGG 5 cut(s) 40, 412, 470, 471, 565
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 3 cut(s) 125, 292, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AluBI AGCT 2 cut(s) 542, 683
AluI AGCT 2 cut(s) 542, 683
Alw21I GWGCWC 3 cut(s) 499, 523, 715
Alw26I GTCTC 1 cut(s) 150
Alw44I GTGCAC 2 cut(s) 495, 519
AlwI GGATC 1 cut(s) 658
AoxI GGCC 4 cut(s) 9, 340, 567, 612
ApaLI GTGCAC 2 cut(s) 495, 519
ApeKI GCWGC 3 cut(s) 542, 590, 680
AsiGI ACCGGT 1 cut(s) 412
Asp718I GGTACC 2 cut(s) 65, 415
AspLEI GCGC 3 cut(s) 261, 485, 673
AspS9I GGNCC 2 cut(s) 568, 620
AsuC2I CCSGG 1 cut(s) 472
AsuHPI GGTGA 2 cut(s) 95, 139
AvaII GGWCC 1 cut(s) 620
AxyI CCTNAGG 1 cut(s) 675
BaeGI GKGCMC 2 cut(s) 499, 523
BalI TGGCCA 2 cut(s) 11, 342
BanI GGYRCC 3 cut(s) 65, 415, 482
Bbv12I GWGCWC 3 cut(s) 499, 523, 715
BbvI GCAGC 3 cut(s) 529, 577, 692
BccI CCATC 3 cut(s) 34, 611, 739
BceAI ACGGC 1 cut(s) 627
BciT130I CCWGG 3 cut(s) 127, 294, 390
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 654
BfoI RGCGCY 2 cut(s) 486, 674
BglI GCCNNNNNGGC 1 cut(s) 339
BisI GCNGC 7 cut(s) 334, 531, 543, 567, 579, 591, 681
BlsI GCNGC 7 cut(s) 335, 532, 544, 568, 580, 592, 682
Bme1390I CCNGG 4 cut(s) 127, 294, 390, 472
Bme18I GGWCC 1 cut(s) 620
BmgT120I GGNCC 2 cut(s) 568, 620
BmiI GGNNCC 4 cut(s) 67, 417, 484, 570
BmrFI CCNGG 4 cut(s) 127, 294, 390, 472
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 697, 729
BpuMI CCSGG 1 cut(s) 472
BsaHI GRCGYC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 5 cut(s) 40, 412, 470, 471, 565
Bse118I RCCGGY 2 cut(s) 263, 412
Bse1I ACTGG 3 cut(s) 384, 420, 484
Bse21I CCTNAGG 1 cut(s) 675
Bse3DI GCAATG 3 cut(s) 328, 525, 756
BseBI CCWGG 3 cut(s) 127, 294, 390
BseDI CCNNGG 1 cut(s) 126
BseLI CCNNNNNNNGG 5 cut(s) 40, 412, 470, 471, 565
BseMI GCAATG 3 cut(s) 328, 525, 756
BseNI ACTGG 3 cut(s) 384, 420, 484
BseRI GAGGAG 3 cut(s) 630, 675, 718
BseSI GKGCMC 2 cut(s) 499, 523
BseX3I CGGCCG 1 cut(s) 612
BseXI GCAGC 3 cut(s) 529, 577, 692
BseYI CCCAGC 1 cut(s) 667
BsgI GTGCAG 2 cut(s) 528, 651
Bsh1236I CGCG 1 cut(s) 259
Bsh1285I CGRYCG 1 cut(s) 615
BshFI GGCC 4 cut(s) 11, 342, 569, 614
BshNI GGYRCC 3 cut(s) 65, 415, 482
BshTI ACCGGT 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 615
BsiHKAI GWGCWC 3 cut(s) 499, 523, 715
BsiSI CCGG 3 cut(s) 264, 413, 471
BslI CCNNNNNNNGG 5 cut(s) 40, 412, 470, 471, 565
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 4 cut(s) 11, 342, 569, 614
Bsp1286I GDGCHC 3 cut(s) 499, 523, 715
Bsp143I GATC 1 cut(s) 663
BspACI CCGC 5 cut(s) 334, 531, 566, 579, 695
BspANI GGCC 4 cut(s) 11, 342, 569, 614
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 4 cut(s) 67, 417, 484, 570
BspPI GGATC 1 cut(s) 658
BspQI GCTCTTC 2 cut(s) 654, 698
BspT107I GGYRCC 3 cut(s) 65, 415, 482
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 3 cut(s) 328, 525, 756
BsrFI RCCGGY 2 cut(s) 263, 412
BsrI ACTGG 3 cut(s) 384, 420, 484
BssAI RCCGGY 2 cut(s) 263, 412
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 663
BssNI GRCGYC 1 cut(s) 483
Bst2UI CCWGG 3 cut(s) 127, 294, 390
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 2 cut(s) 654, 698
BstACI GRCGYC 1 cut(s) 483
BstAPI GCANNNNNTGC 3 cut(s) 503, 527, 551
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 366, 675
BstFNI CGCG 1 cut(s) 259
BstH2I RGCGCY 2 cut(s) 486, 674
BstHHI GCGC 3 cut(s) 261, 485, 673
BstKTI GATC 1 cut(s) 666
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 1 cut(s) 663
BstMCI CGRYCG 1 cut(s) 615
BstMWI GCNNNNNNNGC 8 cut(s) 339, 503, 527, 539, 551, 575, 587, 677
BstNI CCWGG 3 cut(s) 127, 294, 390
BstSCI CCNGG 4 cut(s) 125, 292, 388, 470
BstSFI CTRYAG 1 cut(s) 654
BstSLI GKGCMC 2 cut(s) 499, 523
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 3 cut(s) 529, 577, 692
BstZI CGGCCG 1 cut(s) 612
Bsu36I CCTNAGG 1 cut(s) 675
BsuRI GGCC 4 cut(s) 11, 342, 569, 614
BtsI GCAGTG 3 cut(s) 549, 585, 715
BtsIMutI CAGTG 3 cut(s) 549, 585, 715
Cac8I GCNNGC 1 cut(s) 451
CfoI GCGC 3 cut(s) 261, 485, 673
Cfr10I RCCGGY 2 cut(s) 263, 412
Cfr13I GGNCC 2 cut(s) 568, 620
CseI GACGC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 66, 416
CspAI ACCGGT 1 cut(s) 412
CviAII CATG 2 cut(s) 228, 353
CviQI GTAC 2 cut(s) 66, 416
DdeI CTNAG 2 cut(s) 366, 675
DinI GGCGCC 1 cut(s) 484
DpnI GATC 1 cut(s) 665
DpnII GATC 1 cut(s) 663
DraIII CACNNNGTG 1 cut(s) 629
EaeI YGGCCR 3 cut(s) 9, 340, 612
EagI CGGCCG 1 cut(s) 612
Eam1104I CTCTTC 2 cut(s) 654, 698
EarI CTCTTC 2 cut(s) 654, 698
EclXI CGGCCG 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 620
Eco52I CGGCCG 1 cut(s) 612
Eco81I CCTNAGG 1 cut(s) 675
EcoRII CCWGG 3 cut(s) 125, 292, 388
EgeI GGCGCC 1 cut(s) 484
EheI GGCGCC 1 cut(s) 484
FaeI CATG 2 cut(s) 231, 356
FatI CATG 2 cut(s) 227, 352
FauI CCCGC 1 cut(s) 702
FblI GTMKAC 1 cut(s) 476
Fnu4HI GCNGC 7 cut(s) 334, 531, 543, 567, 579, 591, 681
Fsp4HI GCNGC 7 cut(s) 334, 531, 543, 567, 579, 591, 681
FspBI CTAG 1 cut(s) 426
GlaI GCGC 3 cut(s) 260, 484, 672
GluI GCNGC 7 cut(s) 334, 531, 543, 567, 579, 591, 681
GsaI CCCAGC 1 cut(s) 671
HaeII RGCGCY 2 cut(s) 486, 674
HaeIII GGCC 4 cut(s) 11, 342, 569, 614
HapII CCGG 3 cut(s) 264, 413, 471
HgaI GACGC 1 cut(s) 265
HhaI GCGC 3 cut(s) 261, 485, 673
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 2 cut(s) 231, 356
Hin6I GCGC 3 cut(s) 259, 483, 671
HinP1I GCGC 3 cut(s) 259, 483, 671
HincII GTYRAC 2 cut(s) 115, 477
HindII GTYRAC 2 cut(s) 115, 477
HinfI GANTC 4 cut(s) 54, 86, 439, 635
HpaII CCGG 3 cut(s) 264, 413, 471
HphI GGTGA 2 cut(s) 95, 139
Hpy166II GTNNAC 6 cut(s) 99, 115, 431, 477, 497, 521
Hpy188I TCNGA 2 cut(s) 438, 779
Hpy188III TCNNGA 1 cut(s) 742
Hpy8I GTNNAC 6 cut(s) 99, 115, 431, 477, 497, 521
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 6 cut(s) 211, 231, 497, 521, 545, 632
HpyF10VI GCNNNNNNNGC 8 cut(s) 339, 503, 527, 539, 551, 575, 587, 677
HpyF3I CTNAG 2 cut(s) 366, 675
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 2 cut(s) 231, 356
HspAI GCGC 3 cut(s) 259, 483, 671
KasI GGCGCC 1 cut(s) 482
KpnI GGTACC 2 cut(s) 69, 419
Kzo9I GATC 1 cut(s) 663
LguI GCTCTTC 2 cut(s) 654, 698
LmnI GCTCC 1 cut(s) 688
Lsp1109I GCAGC 3 cut(s) 529, 577, 692
LweI GCATC 1 cut(s) 140
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 665
MbiI CCGCTC 1 cut(s) 336
MboI GATC 1 cut(s) 663
MboII GAAGA 5 cut(s) 155, 295, 298, 641, 715
MfeI CAATTG 1 cut(s) 444
MhlI GDGCHC 3 cut(s) 499, 523, 715
MlsI TGGCCA 2 cut(s) 11, 342
MluCI AATT 1 cut(s) 444
MluNI TGGCCA 2 cut(s) 11, 342
Mly113I GGCGCC 1 cut(s) 483
MlyI GAGTC 4 cut(s) 63, 80, 448, 629
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 4 cut(s) 517, 651, 696, 739
Mox20I TGGCCA 2 cut(s) 11, 342
MscI TGGCCA 2 cut(s) 11, 342
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 2 cut(s) 11, 342
MspI CCGG 3 cut(s) 264, 413, 471
MspR9I CCNGG 4 cut(s) 127, 294, 390, 472
MunI CAATTG 1 cut(s) 444
MvaI CCWGG 3 cut(s) 127, 294, 390
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 8 cut(s) 339, 503, 527, 539, 551, 575, 587, 677
NarI GGCGCC 1 cut(s) 483
NciI CCSGG 1 cut(s) 472
NdeII GATC 1 cut(s) 663
NlaIII CATG 2 cut(s) 231, 356
NlaIV GGNNCC 4 cut(s) 67, 417, 484, 570
NmuCI GTSAC 1 cut(s) 83
PciSI GCTCTTC 2 cut(s) 654, 698
PfoI TCCNGGA 1 cut(s) 388
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 7 cut(s) 335, 532, 544, 568, 580, 592, 682
PleI GAGTC 4 cut(s) 62, 80, 447, 629
PluTI GGCGCC 1 cut(s) 486
PpsI GAGTC 4 cut(s) 62, 80, 447, 629
Psp6I CCWGG 3 cut(s) 125, 292, 388
PspFI CCCAGC 1 cut(s) 667
PspGI CCWGG 3 cut(s) 125, 292, 388
PspN4I GGNNCC 4 cut(s) 67, 417, 484, 570
PspPI GGNCC 2 cut(s) 568, 620
RsaI GTAC 2 cut(s) 67, 417
RsaNI GTAC 2 cut(s) 66, 416
SalI GTCGAC 1 cut(s) 475
SapI GCTCTTC 2 cut(s) 654, 698
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 7 cut(s) 334, 531, 543, 567, 579, 591, 681
Sau3AI GATC 1 cut(s) 663
Sau96I GGNCC 2 cut(s) 568, 620
SchI GAGTC 4 cut(s) 63, 80, 448, 629
ScrFI CCNGG 4 cut(s) 127, 294, 390, 472
SduI GDGCHC 3 cut(s) 499, 523, 715
SetI ASST 9 cut(s) 112, 128, 227, 295, 351, 496, 520, 544, 685
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 654
SfoI GGCGCC 1 cut(s) 484
SgrAI CRCCGGYG 1 cut(s) 263
SinI GGWCC 1 cut(s) 620
Sse9I AATT 1 cut(s) 444
SsiI CCGC 5 cut(s) 334, 531, 566, 579, 695
SspDI GGCGCC 1 cut(s) 482
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 4 cut(s) 125, 292, 388, 470
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 476
TasI AATT 1 cut(s) 444
TauI GCSGC 4 cut(s) 336, 533, 569, 581
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 3 cut(s) 556, 592, 715
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 3 cut(s) 542, 590, 680
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 155, 298, 341
TspRI CASTG 3 cut(s) 556, 592, 715
VneI GTGCAC 2 cut(s) 495, 519
VpaK11BI GGWCC 1 cut(s) 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 476
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.