Rroxscaffold_7G00175830

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018379
Physical Location & Seq
Forward (+)
15312053 .. 15313233
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00175830.1

Sequence Viewer

Length: 750 bp
ATGGCTTTGGCCAATATTCCAATGCTTCTTTCCCTTGTGATGGCTTTGTGTGGAGTCTGCTTTGGTACCATTTACCAAGTGGGTGACTCTAACGGGTGGACAGACAAAGGTGTTGACTATAAGACCTGGGCATCTACCAAAAACTTCACCGTTGGAGACATTCTTCATTTTAAGTATGACAGAAAGGAGAACAATGTAGTGAGAGTGTTGCATAAAGCATTTAGGTCATGCAACCCAAAGGGTAAAATCTACAAGACGCGCACCGGCGACGATTATATACGCTTGAATAGACCAGGAAACTTCTTCTTCATTTGTAGTGTCAATGGACATTGCCGCTCTGGCCAGAAGGTTCATGTTAGCGTTCCTAAGTCAGTTCCAAGTGTCAGTCCTGGAACAGCCCCAACCCTACCACCGGTACCCAGTTCTAGTCCACTTCGGAGTCCAATTGCCAGCCCAACATCTCCCACAGCCACCCCGCCTGCCGCCCCGAAAGGTGCACCCATTGCCGCCCCTACTGCGGCCCCTAAAGCTGCGCCGACTCCTAATGCCGCCCCCACTGCTGCCCCAACAACTCCCCCAACGGCCGATGGACCACCAAGTGCAGACTCTCCTCCTGATCTTCCTATAGAACTGATCCCAGCGCCTAAGGCAGCTCCTCCTAACCCGCCCAAGAAGAGCAGTGCTCAATCCATTCACTCCTCTATGCTGTTCTTGATGGCAATGGGGTTTATTGCCTATATTGTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

249

Amino Acids

26.1

Weight (kDa)

9.66

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 115 7.7e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23990
rosa_chinensis RchiOBHm_Chr6g0291711
rosa_laevigata RLG00000012096
rosa_roxburghii Rroxscaffold_7G00175830
rosa_rugosa Rorug06G0221000
rosa_samantha Rh6AG333600 Rh6BG340600 Rh6CG346800 Rh6DG334000
rosa_wichuraiana Rw6G029050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 65, 415
AccB1I GGYRCC 2 cut(s) 65, 415
AccBSI CCGCTC 1 cut(s) 336
AccII CGCG 1 cut(s) 259
AciI CCGC 7 cut(s) 334, 476, 483, 507, 518, 549, 665
AclWI GGATC 1 cut(s) 628
AcoI YGGCCR 3 cut(s) 9, 340, 582
AdeI CACNNNGTG 1 cut(s) 599
AfaI GTAC 2 cut(s) 67, 417
AfiI CCNNNNNNNGG 3 cut(s) 40, 412, 517
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 3 cut(s) 125, 292, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AluBI AGCT 2 cut(s) 530, 653
AluI AGCT 2 cut(s) 530, 653
Alw21I GWGCWC 2 cut(s) 499, 685
Alw26I GTCTC 1 cut(s) 150
Alw44I GTGCAC 1 cut(s) 495
AlwI GGATC 1 cut(s) 628
AoxI GGCC 4 cut(s) 9, 340, 519, 582
ApaLI GTGCAC 1 cut(s) 495
ApeKI GCWGC 3 cut(s) 530, 560, 650
AsiGI ACCGGT 1 cut(s) 412
Asp718I GGTACC 2 cut(s) 65, 415
AspLEI GCGC 3 cut(s) 261, 535, 643
AspS9I GGNCC 2 cut(s) 520, 590
AsuHPI GGTGA 2 cut(s) 95, 139
AvaII GGWCC 1 cut(s) 590
AxyI CCTNAGG 1 cut(s) 645
BaeGI GKGCMC 1 cut(s) 499
BalI TGGCCA 2 cut(s) 11, 342
BanI GGYRCC 2 cut(s) 65, 415
Bbv12I GWGCWC 2 cut(s) 499, 685
BbvI GCAGC 3 cut(s) 517, 547, 662
BccI CCATC 3 cut(s) 34, 581, 709
BceAI ACGGC 1 cut(s) 597
BciT130I CCWGG 3 cut(s) 127, 294, 390
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 644
BglI GCCNNNNNGGC 1 cut(s) 339
BisI GCNGC 8 cut(s) 334, 483, 507, 519, 531, 549, 561, 651
BlsI GCNGC 8 cut(s) 335, 484, 508, 520, 532, 550, 562, 652
Bme1390I CCNGG 3 cut(s) 127, 294, 390
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 2 cut(s) 520, 590
BmiI GGNNCC 3 cut(s) 67, 417, 522
BmrFI CCNGG 3 cut(s) 127, 294, 390
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 667, 699
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 412, 517
Bse118I RCCGGY 2 cut(s) 263, 412
Bse1I ACTGG 1 cut(s) 420
Bse21I CCTNAGG 1 cut(s) 645
Bse3DI GCAATG 3 cut(s) 328, 501, 726
BseBI CCWGG 3 cut(s) 127, 294, 390
BseDI CCNNGG 1 cut(s) 126
BseLI CCNNNNNNNGG 3 cut(s) 40, 412, 517
BseMI GCAATG 3 cut(s) 328, 501, 726
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 3 cut(s) 600, 645, 688
BseSI GKGCMC 1 cut(s) 499
BseX3I CGGCCG 1 cut(s) 582
BseXI GCAGC 3 cut(s) 517, 547, 662
BseYI CCCAGC 1 cut(s) 637
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 1 cut(s) 259
Bsh1285I CGRYCG 1 cut(s) 585
BshFI GGCC 4 cut(s) 11, 342, 521, 584
BshNI GGYRCC 2 cut(s) 65, 415
BshTI ACCGGT 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 585
BsiHKAI GWGCWC 2 cut(s) 499, 685
BsiSI CCGG 2 cut(s) 264, 413
BslI CCNNNNNNNGG 3 cut(s) 40, 412, 517
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 4 cut(s) 11, 342, 521, 584
Bsp1286I GDGCHC 2 cut(s) 499, 685
Bsp143I GATC 2 cut(s) 616, 633
BspACI CCGC 7 cut(s) 334, 476, 483, 507, 518, 549, 665
BspANI GGCC 4 cut(s) 11, 342, 521, 584
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 3 cut(s) 67, 417, 522
BspPI GGATC 1 cut(s) 628
BspQI GCTCTTC 1 cut(s) 668
BspT107I GGYRCC 2 cut(s) 65, 415
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 3 cut(s) 328, 501, 726
BsrFI RCCGGY 2 cut(s) 263, 412
BsrI ACTGG 1 cut(s) 420
BssAI RCCGGY 2 cut(s) 263, 412
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 616, 633
Bst2UI CCWGG 3 cut(s) 127, 294, 390
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 668
BstAPI GCANNNNNTGC 1 cut(s) 503
BstC8I GCNNGC 2 cut(s) 451, 480
BstDEI CTNAG 2 cut(s) 366, 645
BstFNI CGCG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 644
BstHHI GCGC 3 cut(s) 261, 535, 643
BstKTI GATC 2 cut(s) 619, 636
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 616, 633
BstMCI CGRYCG 1 cut(s) 585
BstMWI GCNNNNNNNGC 6 cut(s) 339, 503, 515, 527, 557, 647
BstNI CCWGG 3 cut(s) 127, 294, 390
BstSCI CCNGG 3 cut(s) 125, 292, 388
BstSFI CTRYAG 1 cut(s) 624
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 3 cut(s) 517, 547, 662
BstZI CGGCCG 1 cut(s) 582
Bsu36I CCTNAGG 1 cut(s) 645
BsuRI GGCC 4 cut(s) 11, 342, 521, 584
BtsI GCAGTG 2 cut(s) 555, 685
BtsIMutI CAGTG 2 cut(s) 555, 685
Cac8I GCNNGC 2 cut(s) 451, 480
CfoI GCGC 3 cut(s) 261, 535, 643
Cfr10I RCCGGY 2 cut(s) 263, 412
Cfr13I GGNCC 2 cut(s) 520, 590
CseI GACGC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 66, 416
CspAI ACCGGT 1 cut(s) 412
CviAII CATG 2 cut(s) 228, 353
CviQI GTAC 2 cut(s) 66, 416
DdeI CTNAG 2 cut(s) 366, 645
DpnI GATC 2 cut(s) 618, 635
DpnII GATC 2 cut(s) 616, 633
DraIII CACNNNGTG 1 cut(s) 599
EaeI YGGCCR 3 cut(s) 9, 340, 582
EagI CGGCCG 1 cut(s) 582
Eam1104I CTCTTC 1 cut(s) 668
EarI CTCTTC 1 cut(s) 668
EclXI CGGCCG 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 590
Eco52I CGGCCG 1 cut(s) 582
Eco81I CCTNAGG 1 cut(s) 645
EcoRII CCWGG 3 cut(s) 125, 292, 388
FaeI CATG 2 cut(s) 231, 356
FatI CATG 2 cut(s) 227, 352
FauI CCCGC 2 cut(s) 483, 672
Fnu4HI GCNGC 8 cut(s) 334, 483, 507, 519, 531, 549, 561, 651
Fsp4HI GCNGC 8 cut(s) 334, 483, 507, 519, 531, 549, 561, 651
FspBI CTAG 1 cut(s) 426
GlaI GCGC 3 cut(s) 260, 534, 642
GluI GCNGC 8 cut(s) 334, 483, 507, 519, 531, 549, 561, 651
GsaI CCCAGC 1 cut(s) 641
HaeII RGCGCY 1 cut(s) 644
HaeIII GGCC 4 cut(s) 11, 342, 521, 584
HapII CCGG 2 cut(s) 264, 413
HgaI GACGC 1 cut(s) 265
HhaI GCGC 3 cut(s) 261, 535, 643
Hin1II CATG 2 cut(s) 231, 356
Hin6I GCGC 3 cut(s) 259, 533, 641
HinP1I GCGC 3 cut(s) 259, 533, 641
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 5 cut(s) 54, 86, 439, 538, 605
HpaII CCGG 2 cut(s) 264, 413
HphI GGTGA 2 cut(s) 95, 139
Hpy166II GTNNAC 4 cut(s) 99, 115, 431, 497
Hpy188I TCNGA 2 cut(s) 438, 749
Hpy188III TCNNGA 2 cut(s) 614, 712
Hpy8I GTNNAC 4 cut(s) 99, 115, 431, 497
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 4 cut(s) 211, 231, 497, 602
HpyF10VI GCNNNNNNNGC 6 cut(s) 339, 503, 515, 527, 557, 647
HpyF3I CTNAG 2 cut(s) 366, 645
Hsp92II CATG 2 cut(s) 231, 356
HspAI GCGC 3 cut(s) 259, 533, 641
KpnI GGTACC 2 cut(s) 69, 419
Kzo9I GATC 2 cut(s) 616, 633
LguI GCTCTTC 1 cut(s) 668
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 3 cut(s) 517, 547, 662
LweI GCATC 1 cut(s) 140
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 618, 635
MbiI CCGCTC 1 cut(s) 336
MboI GATC 2 cut(s) 616, 633
MboII GAAGA 5 cut(s) 155, 295, 298, 611, 685
MfeI CAATTG 1 cut(s) 444
MhlI GDGCHC 2 cut(s) 499, 685
MlsI TGGCCA 2 cut(s) 11, 342
MluCI AATT 1 cut(s) 444
MluNI TGGCCA 2 cut(s) 11, 342
MlyI GAGTC 5 cut(s) 63, 80, 448, 532, 599
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 3 cut(s) 621, 666, 709
Mox20I TGGCCA 2 cut(s) 11, 342
MscI TGGCCA 2 cut(s) 11, 342
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 2 cut(s) 11, 342
MspI CCGG 2 cut(s) 264, 413
MspR9I CCNGG 3 cut(s) 127, 294, 390
MunI CAATTG 1 cut(s) 444
MvaI CCWGG 3 cut(s) 127, 294, 390
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 6 cut(s) 339, 503, 515, 527, 557, 647
NdeII GATC 2 cut(s) 616, 633
NlaIII CATG 2 cut(s) 231, 356
NlaIV GGNNCC 3 cut(s) 67, 417, 522
NmuCI GTSAC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 668
PfoI TCCNGGA 1 cut(s) 388
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 8 cut(s) 335, 484, 508, 520, 532, 550, 562, 652
PleI GAGTC 5 cut(s) 62, 80, 447, 532, 599
PpsI GAGTC 5 cut(s) 62, 80, 447, 532, 599
Psp6I CCWGG 3 cut(s) 125, 292, 388
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 3 cut(s) 125, 292, 388
PspN4I GGNNCC 3 cut(s) 67, 417, 522
PspPI GGNCC 2 cut(s) 520, 590
RsaI GTAC 2 cut(s) 67, 417
RsaNI GTAC 2 cut(s) 66, 416
SapI GCTCTTC 1 cut(s) 668
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 8 cut(s) 334, 483, 507, 519, 531, 549, 561, 651
Sau3AI GATC 2 cut(s) 616, 633
Sau96I GGNCC 2 cut(s) 520, 590
SchI GAGTC 5 cut(s) 63, 80, 448, 532, 599
ScrFI CCNGG 3 cut(s) 127, 294, 390
SduI GDGCHC 2 cut(s) 499, 685
SetI ASST 7 cut(s) 112, 128, 227, 351, 496, 532, 655
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 624
SgrAI CRCCGGYG 1 cut(s) 263
SinI GGWCC 1 cut(s) 590
Sse9I AATT 1 cut(s) 444
SsiI CCGC 7 cut(s) 334, 476, 483, 507, 518, 549, 665
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 125, 292, 388
TaaI ACNGT 1 cut(s) 151
TasI AATT 1 cut(s) 444
TauI GCSGC 5 cut(s) 336, 485, 509, 521, 551
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 562, 685
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 3 cut(s) 530, 560, 650
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 155, 298, 341
TspRI CASTG 2 cut(s) 562, 685
VneI GTGCAC 1 cut(s) 495
VpaK11BI GGWCC 1 cut(s) 590
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.