Rh6DG334000

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018379
Physical Location & Seq
Reverse (-)
53896764 .. 53897975
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG334000.1

Sequence Viewer

Length: 792 bp
ATGGCTTTGGCCAATATTCCAATGCTTCTTTCCCTTTTGATGGCTTTGTGTGGAGTCTGCTTTGGTACCATTTACCAAGTGGGTGACTCTAACGGGTGGACAGACAAAGGTGTTGACTATAAGACCTGGGCATCTACCAAAAACTTCACCGTTGGAGACATTCTTCATTTTAAGTATGACAGAAAGGAGAACAATGTAGTGAGAGTGTTGCATAAAGCATTTAGGTCATGCAACCCAAAGGGTAAAATCTACAAGACGCGCACCGGCGACGATTATATACGCTTGAATAGACCTGGAAACTTCTTCTTCATTTGTAGTGTCAATGGACATTGCCGCTCTGGCCAGAAGGTTCATGTTAGCGTTTCTAAGTCAGTTCCAAGTGTCAGTCCTGGAACAGCCCCAACCCTACCACCGGTACCCAGTTCTAGTCCACTTCGGAGTCCAATTGCCAGCCCAACATCTCCCACAGCCACCCCGACTGGCGCCCCGAAAGGTGCACCCATTGCCTCCCCAAAAGGTGCACCCATTGCCTCCCCAAAAGGTGCACCCACTGCCGCCCCAAAAGGTGCACCCACTGCCGCCCCAAAAGGTGCACCCACTGCCGCCCCAACAACTCCCCCAACGGCTGATGGACCACCAAGTGCAGACTCTCCTCCTGATCTTCCTATAGAACTGATCCCAGCGCCTAAGGCACCTCCTCCTAACCCGCCCAAGAAGAGCAGTGCTCAATCCATTCACTCCTCTATGCTGTTCTTGATGGCAATGGGGTTTATTGCCTATATTGTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

263

Amino Acids

27.34

Weight (kDa)

9.8

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 115 8.6e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23990
rosa_chinensis RchiOBHm_Chr6g0291711
rosa_laevigata RLG00000012096
rosa_roxburghii Rroxscaffold_7G00175830
rosa_rugosa Rorug06G0221000
rosa_samantha Rh6AG333600 Rh6BG340600 Rh6CG346800 Rh6DG334000
rosa_wichuraiana Rw6G029050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 65, 415
AccB1I GGYRCC 4 cut(s) 65, 415, 482, 691
AccBSI CCGCTC 1 cut(s) 336
AccII CGCG 1 cut(s) 259
AciI CCGC 5 cut(s) 334, 555, 579, 603, 707
AclWI GGATC 1 cut(s) 670
AcoI YGGCCR 2 cut(s) 9, 340
AcyI GRCGYC 1 cut(s) 483
AdeI CACNNNGTG 1 cut(s) 641
AfaI GTAC 2 cut(s) 67, 417
AfiI CCNNNNNNNGG 2 cut(s) 40, 412
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 3 cut(s) 125, 292, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
Alw21I GWGCWC 6 cut(s) 499, 523, 547, 571, 595, 727
Alw26I GTCTC 1 cut(s) 150
Alw44I GTGCAC 5 cut(s) 495, 519, 543, 567, 591
AlwI GGATC 1 cut(s) 670
AoxI GGCC 2 cut(s) 9, 340
ApaLI GTGCAC 5 cut(s) 495, 519, 543, 567, 591
AsiGI ACCGGT 1 cut(s) 412
Asp718I GGTACC 2 cut(s) 65, 415
AspLEI GCGC 3 cut(s) 261, 485, 685
AspS9I GGNCC 1 cut(s) 632
AsuHPI GGTGA 2 cut(s) 95, 139
AvaII GGWCC 1 cut(s) 632
AxyI CCTNAGG 1 cut(s) 687
BaeGI GKGCMC 5 cut(s) 499, 523, 547, 571, 595
BalI TGGCCA 2 cut(s) 11, 342
BanI GGYRCC 4 cut(s) 65, 415, 482, 691
Bbv12I GWGCWC 6 cut(s) 499, 523, 547, 571, 595, 727
BccI CCATC 3 cut(s) 34, 623, 751
BceAI ACGGC 1 cut(s) 639
BciT130I CCWGG 3 cut(s) 127, 294, 390
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 666
BfoI RGCGCY 2 cut(s) 486, 686
BglI GCCNNNNNGGC 1 cut(s) 339
BisI GCNGC 4 cut(s) 334, 555, 579, 603
BlsI GCNGC 4 cut(s) 335, 556, 580, 604
Bme1390I CCNGG 3 cut(s) 127, 294, 390
Bme18I GGWCC 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 632
BmiI GGNNCC 4 cut(s) 67, 417, 484, 693
BmrFI CCNGG 3 cut(s) 127, 294, 390
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 709, 741
BsaHI GRCGYC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 412
Bse118I RCCGGY 2 cut(s) 263, 412
Bse1I ACTGG 2 cut(s) 420, 484
Bse21I CCTNAGG 1 cut(s) 687
Bse3DI GCAATG 4 cut(s) 328, 501, 525, 768
BseBI CCWGG 3 cut(s) 127, 294, 390
BseDI CCNNGG 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 40, 412
BseMI GCAATG 4 cut(s) 328, 501, 525, 768
BseNI ACTGG 2 cut(s) 420, 484
BseRI GAGGAG 3 cut(s) 642, 687, 730
BseSI GKGCMC 5 cut(s) 499, 523, 547, 571, 595
BseYI CCCAGC 1 cut(s) 679
BsgI GTGCAG 1 cut(s) 663
Bsh1236I CGCG 1 cut(s) 259
BshFI GGCC 2 cut(s) 11, 342
BshNI GGYRCC 4 cut(s) 65, 415, 482, 691
BshTI ACCGGT 1 cut(s) 412
BsiHKAI GWGCWC 6 cut(s) 499, 523, 547, 571, 595, 727
BsiSI CCGG 2 cut(s) 264, 413
BslI CCNNNNNNNGG 2 cut(s) 40, 412
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 2 cut(s) 11, 342
Bsp1286I GDGCHC 6 cut(s) 499, 523, 547, 571, 595, 727
Bsp143I GATC 2 cut(s) 658, 675
BspACI CCGC 5 cut(s) 334, 555, 579, 603, 707
BspANI GGCC 2 cut(s) 11, 342
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 4 cut(s) 67, 417, 484, 693
BspPI GGATC 1 cut(s) 670
BspQI GCTCTTC 1 cut(s) 710
BspT107I GGYRCC 4 cut(s) 65, 415, 482, 691
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 4 cut(s) 328, 501, 525, 768
BsrFI RCCGGY 2 cut(s) 263, 412
BsrI ACTGG 2 cut(s) 420, 484
BssAI RCCGGY 2 cut(s) 263, 412
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 658, 675
BssNI GRCGYC 1 cut(s) 483
Bst2UI CCWGG 3 cut(s) 127, 294, 390
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 710
BstACI GRCGYC 1 cut(s) 483
BstAPI GCANNNNNTGC 5 cut(s) 503, 527, 551, 575, 599
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 366, 687
BstFNI CGCG 1 cut(s) 259
BstH2I RGCGCY 2 cut(s) 486, 686
BstHHI GCGC 3 cut(s) 261, 485, 685
BstKTI GATC 2 cut(s) 661, 678
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 658, 675
BstMWI GCNNNNNNNGC 7 cut(s) 339, 503, 527, 551, 575, 599, 689
BstNI CCWGG 3 cut(s) 127, 294, 390
BstSCI CCNGG 3 cut(s) 125, 292, 388
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 5 cut(s) 499, 523, 547, 571, 595
BstUI CGCG 1 cut(s) 259
Bsu36I CCTNAGG 1 cut(s) 687
BsuRI GGCC 2 cut(s) 11, 342
BtsI GCAGTG 4 cut(s) 549, 573, 597, 727
BtsIMutI CAGTG 4 cut(s) 549, 573, 597, 727
Cac8I GCNNGC 1 cut(s) 451
CfoI GCGC 3 cut(s) 261, 485, 685
Cfr10I RCCGGY 2 cut(s) 263, 412
Cfr13I GGNCC 1 cut(s) 632
CseI GACGC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 66, 416
CspAI ACCGGT 1 cut(s) 412
CviAII CATG 2 cut(s) 228, 353
CviJI RGCY 8 cut(s) 5, 11, 44, 342, 398, 453, 470, 626
CviKI_1 RGCY 8 cut(s) 5, 11, 44, 342, 398, 453, 470, 626
CviQI GTAC 2 cut(s) 66, 416
DdeI CTNAG 2 cut(s) 366, 687
DinI GGCGCC 1 cut(s) 484
DpnI GATC 2 cut(s) 660, 677
DpnII GATC 2 cut(s) 658, 675
DraIII CACNNNGTG 1 cut(s) 641
EaeI YGGCCR 2 cut(s) 9, 340
Eam1104I CTCTTC 1 cut(s) 710
EarI CTCTTC 1 cut(s) 710
Eco47I GGWCC 1 cut(s) 632
Eco81I CCTNAGG 1 cut(s) 687
EcoRII CCWGG 3 cut(s) 125, 292, 388
EgeI GGCGCC 1 cut(s) 484
EheI GGCGCC 1 cut(s) 484
FaeI CATG 2 cut(s) 231, 356
FatI CATG 2 cut(s) 227, 352
FauI CCCGC 1 cut(s) 714
Fnu4HI GCNGC 4 cut(s) 334, 555, 579, 603
Fsp4HI GCNGC 4 cut(s) 334, 555, 579, 603
FspBI CTAG 1 cut(s) 426
GlaI GCGC 3 cut(s) 260, 484, 684
GluI GCNGC 4 cut(s) 334, 555, 579, 603
GsaI CCCAGC 1 cut(s) 683
HaeII RGCGCY 2 cut(s) 486, 686
HaeIII GGCC 2 cut(s) 11, 342
HapII CCGG 2 cut(s) 264, 413
HgaI GACGC 1 cut(s) 265
HhaI GCGC 3 cut(s) 261, 485, 685
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 2 cut(s) 231, 356
Hin6I GCGC 3 cut(s) 259, 483, 683
HinP1I GCGC 3 cut(s) 259, 483, 683
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 4 cut(s) 54, 86, 439, 647
HpaII CCGG 2 cut(s) 264, 413
HphI GGTGA 2 cut(s) 95, 139
Hpy166II GTNNAC 8 cut(s) 99, 115, 431, 497, 521, 545, 569, 593
Hpy188I TCNGA 2 cut(s) 438, 791
Hpy188III TCNNGA 2 cut(s) 656, 754
Hpy8I GTNNAC 8 cut(s) 99, 115, 431, 497, 521, 545, 569, 593
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 8 cut(s) 211, 231, 497, 521, 545, 569, 593, 644
HpyF10VI GCNNNNNNNGC 7 cut(s) 339, 503, 527, 551, 575, 599, 689
HpyF3I CTNAG 2 cut(s) 366, 687
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 2 cut(s) 231, 356
HspAI GCGC 3 cut(s) 259, 483, 683
KasI GGCGCC 1 cut(s) 482
KpnI GGTACC 2 cut(s) 69, 419
Kzo9I GATC 2 cut(s) 658, 675
LguI GCTCTTC 1 cut(s) 710
LweI GCATC 1 cut(s) 140
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 660, 677
MbiI CCGCTC 1 cut(s) 336
MboI GATC 2 cut(s) 658, 675
MboII GAAGA 5 cut(s) 155, 295, 298, 653, 727
MfeI CAATTG 1 cut(s) 444
MhlI GDGCHC 6 cut(s) 499, 523, 547, 571, 595, 727
MlsI TGGCCA 2 cut(s) 11, 342
MluCI AATT 1 cut(s) 444
MluNI TGGCCA 2 cut(s) 11, 342
Mly113I GGCGCC 1 cut(s) 483
MlyI GAGTC 4 cut(s) 63, 80, 448, 641
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 6 cut(s) 517, 541, 663, 705, 708, 751
Mox20I TGGCCA 2 cut(s) 11, 342
MscI TGGCCA 2 cut(s) 11, 342
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 2 cut(s) 11, 342
MspI CCGG 2 cut(s) 264, 413
MspR9I CCNGG 3 cut(s) 127, 294, 390
MunI CAATTG 1 cut(s) 444
MvaI CCWGG 3 cut(s) 127, 294, 390
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 7 cut(s) 339, 503, 527, 551, 575, 599, 689
NarI GGCGCC 1 cut(s) 483
NdeII GATC 2 cut(s) 658, 675
NlaIII CATG 2 cut(s) 231, 356
NlaIV GGNNCC 4 cut(s) 67, 417, 484, 693
NmuCI GTSAC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 710
PfoI TCCNGGA 1 cut(s) 388
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 4 cut(s) 335, 556, 580, 604
PleI GAGTC 4 cut(s) 62, 80, 447, 641
PluTI GGCGCC 1 cut(s) 486
PpsI GAGTC 4 cut(s) 62, 80, 447, 641
Psp6I CCWGG 3 cut(s) 125, 292, 388
PspFI CCCAGC 1 cut(s) 679
PspGI CCWGG 3 cut(s) 125, 292, 388
PspN4I GGNNCC 4 cut(s) 67, 417, 484, 693
PspPI GGNCC 1 cut(s) 632
RsaI GTAC 2 cut(s) 67, 417
RsaNI GTAC 2 cut(s) 66, 416
SapI GCTCTTC 1 cut(s) 710
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 4 cut(s) 334, 555, 579, 603
Sau3AI GATC 2 cut(s) 658, 675
Sau96I GGNCC 1 cut(s) 632
SchI GAGTC 4 cut(s) 63, 80, 448, 641
ScrFI CCNGG 3 cut(s) 127, 294, 390
SduI GDGCHC 6 cut(s) 499, 523, 547, 571, 595, 727
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 666
SfoI GGCGCC 1 cut(s) 484
SgrAI CRCCGGYG 1 cut(s) 263
SinI GGWCC 1 cut(s) 632
Sse9I AATT 1 cut(s) 444
SsiI CCGC 5 cut(s) 334, 555, 579, 603, 707
SspDI GGCGCC 1 cut(s) 482
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 125, 292, 388
TaaI ACNGT 1 cut(s) 151
TasI AATT 1 cut(s) 444
TauI GCSGC 4 cut(s) 336, 557, 581, 605
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 4 cut(s) 556, 580, 604, 727
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 155, 298, 341
TspRI CASTG 4 cut(s) 556, 580, 604, 727
VneI GTGCAC 5 cut(s) 495, 519, 543, 567, 591
VpaK11BI GGWCC 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.