Rw6G029050

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0018379
Physical Location & Seq
Reverse (-)
53181505 .. 53182678
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G029050.1

Sequence Viewer

Length: 768 bp
ATGGCTTTGGCCAATATTCCAATGCTTCTTTCCCTTTTGATGGCTTTGTGTGGAGTCTGCTTTGGTACCATTTACCAAGTGGGTGACTCTAACGGGTGGACAGACAAAGGTGTTGACTATAAGACCTGGGCATTTACCAAAAACTTCACCGTTGGAGACATTCTTCATTTTAAGTATGACAGAAAGGAGAACAATGTAGTGAGAGTGTTGCATAAAGCATTTAGGTCATGCAACCCAAAGGGTAAAATCTACAAGACGCGCACCGGCGACGATTATATACGCTTGAATAGACCTGGAAACTTCTTCTTCATTTGTAGTGTCAATGGACATTGCCGCTCTGGCCAGAAGGTTCATGTTAGCGTTTCTAAGTCAGTTCCAAGTGTCAGTCCTGGAACAGCCCCAACCCTACCACCGGTACCCAGTTCTAGTCCACTCCGGAGTCCAATTGCCAGCCCAACATCTCCCACAGCCACCCCGACTGGGGCCCCTAAAGGTGCACCGATTGCCTCCCCAAAAGGTGCACCCACTGCCGCCCCAAAAGGTGCACCGATTGCCTCCCCAAAAGGTGCACCCACTGCTGCCCCAACAACTCCCCCAATGGCTGATGGACCACCAAGTGCAGACTCTCCTCCTGATCTTCCTATAGTACTGATCCCAGCGCCTAAGGCAGCTCCTCCTAACCCGCCCAAGAAGAGCAGTGCTCAATCCATTCACTCCTCTATGCTGTTCTTGATGGCAATGGGGTTTATTGCCTATATTGTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

255

Amino Acids

26.68

Weight (kDa)

9.82

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 115 5e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23990
rosa_chinensis RchiOBHm_Chr6g0291711
rosa_laevigata RLG00000012096
rosa_roxburghii Rroxscaffold_7G00175830
rosa_rugosa Rorug06G0221000
rosa_samantha Rh6AG333600 Rh6BG340600 Rh6CG346800 Rh6DG334000
rosa_wichuraiana Rw6G029050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 65, 415
AccB1I GGYRCC 2 cut(s) 65, 415
AccBSI CCGCTC 1 cut(s) 336
AccII CGCG 1 cut(s) 259
AccIII TCCGGA 1 cut(s) 435
AciI CCGC 3 cut(s) 334, 531, 683
AclWI GGATC 1 cut(s) 646
AcoI YGGCCR 2 cut(s) 9, 340
AdeI CACNNNGTG 1 cut(s) 617
AfaI GTAC 3 cut(s) 67, 417, 648
AfiI CCNNNNNNNGG 4 cut(s) 40, 412, 480, 481
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 3 cut(s) 125, 292, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AluBI AGCT 1 cut(s) 671
AluI AGCT 1 cut(s) 671
Alw21I GWGCWC 5 cut(s) 499, 523, 547, 571, 703
Alw26I GTCTC 1 cut(s) 150
Alw44I GTGCAC 4 cut(s) 495, 519, 543, 567
AlwI GGATC 1 cut(s) 646
Aor13HI TCCGGA 1 cut(s) 435
AoxI GGCC 3 cut(s) 9, 340, 483
ApaI GGGCCC 1 cut(s) 487
ApaLI GTGCAC 4 cut(s) 495, 519, 543, 567
ApeKI GCWGC 2 cut(s) 578, 668
AsiGI ACCGGT 1 cut(s) 412
Asp718I GGTACC 2 cut(s) 65, 415
AspLEI GCGC 2 cut(s) 261, 661
AspS9I GGNCC 3 cut(s) 483, 484, 608
AsuHPI GGTGA 2 cut(s) 95, 139
AvaII GGWCC 1 cut(s) 608
AxyI CCTNAGG 1 cut(s) 663
BaeGI GKGCMC 5 cut(s) 487, 499, 523, 547, 571
BalI TGGCCA 2 cut(s) 11, 342
BanI GGYRCC 2 cut(s) 65, 415
BanII GRGCYC 1 cut(s) 487
Bbv12I GWGCWC 5 cut(s) 499, 523, 547, 571, 703
BbvI GCAGC 2 cut(s) 565, 680
BccI CCATC 3 cut(s) 34, 599, 727
BciT130I CCWGG 3 cut(s) 127, 294, 390
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 642
BfoI RGCGCY 1 cut(s) 662
BglI GCCNNNNNGGC 1 cut(s) 339
BisI GCNGC 4 cut(s) 334, 531, 579, 669
BlsI GCNGC 4 cut(s) 335, 532, 580, 670
BmcAI AGTACT 1 cut(s) 648
Bme1390I CCNGG 3 cut(s) 127, 294, 390
Bme18I GGWCC 1 cut(s) 608
BmgT120I GGNCC 3 cut(s) 483, 484, 608
BmiI GGNNCC 5 cut(s) 67, 417, 484, 485, 486
BmrFI CCNGG 3 cut(s) 127, 294, 390
BmrI ACTGGG 2 cut(s) 414, 489
BmuI ACTGGG 2 cut(s) 414, 489
BplI GAGNNNNNCTC 2 cut(s) 685, 717
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 2 cut(s) 412, 435
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 412, 480, 481
Bse118I RCCGGY 2 cut(s) 263, 412
Bse1I ACTGG 2 cut(s) 420, 484
Bse21I CCTNAGG 1 cut(s) 663
Bse3DI GCAATG 2 cut(s) 328, 744
BseAI TCCGGA 1 cut(s) 435
BseBI CCWGG 3 cut(s) 127, 294, 390
BseDI CCNNGG 1 cut(s) 126
BseLI CCNNNNNNNGG 4 cut(s) 40, 412, 480, 481
BseMI GCAATG 2 cut(s) 328, 744
BseNI ACTGG 2 cut(s) 420, 484
BseRI GAGGAG 3 cut(s) 618, 663, 706
BseSI GKGCMC 5 cut(s) 487, 499, 523, 547, 571
BseXI GCAGC 2 cut(s) 565, 680
BseYI CCCAGC 1 cut(s) 655
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 1 cut(s) 259
BshFI GGCC 3 cut(s) 11, 342, 485
BshNI GGYRCC 2 cut(s) 65, 415
BshTI ACCGGT 1 cut(s) 412
BsiHKAI GWGCWC 5 cut(s) 499, 523, 547, 571, 703
BsiSI CCGG 3 cut(s) 264, 413, 436
BslI CCNNNNNNNGG 4 cut(s) 40, 412, 480, 481
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 3 cut(s) 11, 342, 485
Bsp120I GGGCCC 1 cut(s) 483
Bsp1286I GDGCHC 6 cut(s) 487, 499, 523, 547, 571, 703
Bsp13I TCCGGA 1 cut(s) 435
Bsp143I GATC 2 cut(s) 634, 651
BspACI CCGC 3 cut(s) 334, 531, 683
BspANI GGCC 3 cut(s) 11, 342, 485
BspEI TCCGGA 1 cut(s) 435
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 5 cut(s) 67, 417, 484, 485, 486
BspPI GGATC 1 cut(s) 646
BspQI GCTCTTC 1 cut(s) 686
BspT107I GGYRCC 2 cut(s) 65, 415
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 2 cut(s) 328, 744
BsrFI RCCGGY 2 cut(s) 263, 412
BsrI ACTGG 2 cut(s) 420, 484
BssAI RCCGGY 2 cut(s) 263, 412
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 634, 651
Bst2UI CCWGG 3 cut(s) 127, 294, 390
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 686
BstAPI GCANNNNNTGC 4 cut(s) 503, 527, 551, 575
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 366, 663
BstFNI CGCG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 662
BstHHI GCGC 2 cut(s) 261, 661
BstKTI GATC 2 cut(s) 637, 654
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 634, 651
BstMWI GCNNNNNNNGC 6 cut(s) 339, 503, 527, 551, 575, 665
BstNI CCWGG 3 cut(s) 127, 294, 390
BstSCI CCNGG 3 cut(s) 125, 292, 388
BstSFI CTRYAG 1 cut(s) 642
BstSLI GKGCMC 5 cut(s) 487, 499, 523, 547, 571
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 565, 680
Bsu36I CCTNAGG 1 cut(s) 663
BsuRI GGCC 3 cut(s) 11, 342, 485
BtsI GCAGTG 3 cut(s) 525, 573, 703
BtsIMutI CAGTG 3 cut(s) 525, 573, 703
Cac8I GCNNGC 1 cut(s) 451
CfoI GCGC 2 cut(s) 261, 661
Cfr10I RCCGGY 2 cut(s) 263, 412
Cfr13I GGNCC 3 cut(s) 483, 484, 608
CseI GACGC 1 cut(s) 265
Csp6I GTAC 3 cut(s) 66, 416, 647
CspAI ACCGGT 1 cut(s) 412
CviAII CATG 2 cut(s) 228, 353
CviQI GTAC 3 cut(s) 66, 416, 647
DdeI CTNAG 2 cut(s) 366, 663
DpnI GATC 2 cut(s) 636, 653
DpnII GATC 2 cut(s) 634, 651
DraIII CACNNNGTG 1 cut(s) 617
EaeI YGGCCR 2 cut(s) 9, 340
Eam1104I CTCTTC 1 cut(s) 686
EarI CTCTTC 1 cut(s) 686
Eco24I GRGCYC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 608
Eco81I CCTNAGG 1 cut(s) 663
EcoO109I RGGNCCY 2 cut(s) 483, 484
EcoRII CCWGG 3 cut(s) 125, 292, 388
EcoT38I GRGCYC 1 cut(s) 487
FaeI CATG 2 cut(s) 231, 356
FatI CATG 2 cut(s) 227, 352
FauI CCCGC 1 cut(s) 690
Fnu4HI GCNGC 4 cut(s) 334, 531, 579, 669
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 4 cut(s) 334, 531, 579, 669
FspBI CTAG 1 cut(s) 426
GlaI GCGC 2 cut(s) 260, 660
GluI GCNGC 4 cut(s) 334, 531, 579, 669
GsaI CCCAGC 1 cut(s) 659
HaeII RGCGCY 1 cut(s) 662
HaeIII GGCC 3 cut(s) 11, 342, 485
HapII CCGG 3 cut(s) 264, 413, 436
HgaI GACGC 1 cut(s) 265
HhaI GCGC 2 cut(s) 261, 661
Hin1II CATG 2 cut(s) 231, 356
Hin6I GCGC 2 cut(s) 259, 659
HinP1I GCGC 2 cut(s) 259, 659
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 4 cut(s) 54, 86, 439, 623
HpaII CCGG 3 cut(s) 264, 413, 436
HphI GGTGA 2 cut(s) 95, 139
Hpy166II GTNNAC 7 cut(s) 99, 115, 431, 497, 521, 545, 569
Hpy188I TCNGA 1 cut(s) 767
Hpy188III TCNNGA 3 cut(s) 436, 632, 730
Hpy8I GTNNAC 7 cut(s) 99, 115, 431, 497, 521, 545, 569
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 7 cut(s) 211, 231, 497, 521, 545, 569, 620
HpyF10VI GCNNNNNNNGC 6 cut(s) 339, 503, 527, 551, 575, 665
HpyF3I CTNAG 2 cut(s) 366, 663
Hsp92II CATG 2 cut(s) 231, 356
HspAI GCGC 2 cut(s) 259, 659
Kpn2I TCCGGA 1 cut(s) 435
KpnI GGTACC 2 cut(s) 69, 419
Kzo9I GATC 2 cut(s) 634, 651
LguI GCTCTTC 1 cut(s) 686
LmnI GCTCC 1 cut(s) 676
Lsp1109I GCAGC 2 cut(s) 565, 680
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 636, 653
MbiI CCGCTC 1 cut(s) 336
MboI GATC 2 cut(s) 634, 651
MboII GAAGA 5 cut(s) 155, 295, 298, 629, 703
MfeI CAATTG 1 cut(s) 444
MhlI GDGCHC 6 cut(s) 487, 499, 523, 547, 571, 703
MlsI TGGCCA 2 cut(s) 11, 342
MluCI AATT 1 cut(s) 444
MluNI TGGCCA 2 cut(s) 11, 342
MlyI GAGTC 4 cut(s) 63, 80, 448, 617
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 5 cut(s) 517, 565, 639, 684, 727
Mox20I TGGCCA 2 cut(s) 11, 342
MroI TCCGGA 1 cut(s) 435
MscI TGGCCA 2 cut(s) 11, 342
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 2 cut(s) 11, 342
MspI CCGG 3 cut(s) 264, 413, 436
MspR9I CCNGG 3 cut(s) 127, 294, 390
MunI CAATTG 1 cut(s) 444
MvaI CCWGG 3 cut(s) 127, 294, 390
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 6 cut(s) 339, 503, 527, 551, 575, 665
NdeII GATC 2 cut(s) 634, 651
NlaIII CATG 2 cut(s) 231, 356
NlaIV GGNNCC 5 cut(s) 67, 417, 484, 485, 486
NmuCI GTSAC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 686
PfoI TCCNGGA 1 cut(s) 388
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 4 cut(s) 335, 532, 580, 670
PleI GAGTC 4 cut(s) 62, 80, 447, 617
PpsI GAGTC 4 cut(s) 62, 80, 447, 617
Psp6I CCWGG 3 cut(s) 125, 292, 388
PspFI CCCAGC 1 cut(s) 655
PspGI CCWGG 3 cut(s) 125, 292, 388
PspN4I GGNNCC 5 cut(s) 67, 417, 484, 485, 486
PspOMI GGGCCC 1 cut(s) 483
PspPI GGNCC 3 cut(s) 483, 484, 608
RsaI GTAC 3 cut(s) 67, 417, 648
RsaNI GTAC 3 cut(s) 66, 416, 647
SapI GCTCTTC 1 cut(s) 686
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 4 cut(s) 334, 531, 579, 669
Sau3AI GATC 2 cut(s) 634, 651
Sau96I GGNCC 3 cut(s) 483, 484, 608
ScaI AGTACT 1 cut(s) 648
SchI GAGTC 4 cut(s) 63, 80, 448, 617
ScrFI CCNGG 3 cut(s) 127, 294, 390
SduI GDGCHC 6 cut(s) 487, 499, 523, 547, 571, 703
SfcI CTRYAG 1 cut(s) 642
SgrAI CRCCGGYG 1 cut(s) 263
SinI GGWCC 1 cut(s) 608
Sse9I AATT 1 cut(s) 444
SsiI CCGC 3 cut(s) 334, 531, 683
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 125, 292, 388
TaaI ACNGT 1 cut(s) 151
TasI AATT 1 cut(s) 444
TatI WGTACW 1 cut(s) 646
TauI GCSGC 2 cut(s) 336, 533
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 3 cut(s) 532, 580, 703
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 2 cut(s) 578, 668
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 155, 298, 341
TspRI CASTG 3 cut(s) 532, 580, 703
VneI GTGCAC 4 cut(s) 495, 519, 543, 567
VpaK11BI GGWCC 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.