Rh6AG333600

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018379
Physical Location & Seq
Reverse (-)
53470949 .. 53472170
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG333600.1

Sequence Viewer

Length: 816 bp
ATGGCTTTGGCCAATATTCCAATGCTTCTTTCCCTTTTGATGGCTTTGTGTGGAGTCTGCTTTGGTACCATTTACCAAGTGGGTGACTCTAACGGGTGGACAGACAAAGGTGTTGACTATAAGACCTGGGCATTTACCAAAAACTTCACCGTTGGAGACATTCTTCATTTTAAGTATGACAGAAAGGAGAACAATGTAGTGAGAGTGTTGCATAAAGCATTTAGGTCATGCAACCCAAAGGGTAAAATCTACAAGACGCGCACCGGCGACGATTATATACGCTTGAATAGACCTGGAAACTTCTTCTTCATTTGTAGTGTCAATGGACATTGCCGCTCTGGCCAGAAGGTTCATGTTAGCGTTTCTAAGTCAGTTCCAAGTGTCAGTCCTGGAACAGCCCCAACCCTACCACCGGTACCCAGTTCTAGTCCACTCCGGAGTCCAATTGCCAGCCCAACATCTCCCACAGCCACCCCGACTCGGGCCCCTAAAGGTGCACCGATTGCCTCCCCAAAAGGTGCACCCACTGCCGCCCCAAAAGGTGCACCGATTGCCTCCCCAAAAGGTGCACCCACTGCCGCCCCAAAAGGTGCACCGATTGCCTCCCCAAAAGGTGCACCCACTGCTGCCCCAACAACTCCCCCAATGGCTGATGGACCACCAAGTGCAGACTCTCCTCCTGATCTTCCTATAGTACTGATCCCAGCGCCTAAGGCAGCTCCTCCTAACCCGCCCAAGAAGAGCAGTGCTCAATCCATTCACTCCTCTATGCTGTTCTTGATGGCAATGGGGTTTATTGCCTATATTGTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

271

Amino Acids

28.2

Weight (kDa)

9.96

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 115 5.6e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018379)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23990
rosa_chinensis RchiOBHm_Chr6g0291711
rosa_laevigata RLG00000012096
rosa_roxburghii Rroxscaffold_7G00175830
rosa_rugosa Rorug06G0221000
rosa_samantha Rh6AG333600 Rh6BG340600 Rh6CG346800 Rh6DG334000
rosa_wichuraiana Rw6G029050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 65, 415
AccB1I GGYRCC 2 cut(s) 65, 415
AccBSI CCGCTC 1 cut(s) 336
AccII CGCG 1 cut(s) 259
AccIII TCCGGA 1 cut(s) 435
AciI CCGC 4 cut(s) 334, 531, 579, 731
AclWI GGATC 1 cut(s) 694
AcoI YGGCCR 2 cut(s) 9, 340
AdeI CACNNNGTG 1 cut(s) 665
AfaI GTAC 3 cut(s) 67, 417, 696
AfiI CCNNNNNNNGG 4 cut(s) 40, 412, 480, 481
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 3 cut(s) 125, 292, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AluBI AGCT 1 cut(s) 719
AluI AGCT 1 cut(s) 719
Alw21I GWGCWC 7 cut(s) 499, 523, 547, 571, 595, 619, 751
Alw26I GTCTC 1 cut(s) 150
Alw44I GTGCAC 6 cut(s) 495, 519, 543, 567, 591, 615
AlwI GGATC 1 cut(s) 694
Ama87I CYCGRG 1 cut(s) 480
Aor13HI TCCGGA 1 cut(s) 435
AoxI GGCC 3 cut(s) 9, 340, 483
ApaI GGGCCC 1 cut(s) 487
ApaLI GTGCAC 6 cut(s) 495, 519, 543, 567, 591, 615
ApeKI GCWGC 2 cut(s) 626, 716
AsiGI ACCGGT 1 cut(s) 412
Asp718I GGTACC 2 cut(s) 65, 415
AspLEI GCGC 2 cut(s) 261, 709
AspS9I GGNCC 3 cut(s) 483, 484, 656
AsuHPI GGTGA 2 cut(s) 95, 139
AvaI CYCGRG 1 cut(s) 480
AvaII GGWCC 1 cut(s) 656
AxyI CCTNAGG 1 cut(s) 711
BaeGI GKGCMC 7 cut(s) 487, 499, 523, 547, 571, 595, 619
BalI TGGCCA 2 cut(s) 11, 342
BanI GGYRCC 2 cut(s) 65, 415
BanII GRGCYC 1 cut(s) 487
Bbv12I GWGCWC 7 cut(s) 499, 523, 547, 571, 595, 619, 751
BbvI GCAGC 2 cut(s) 613, 728
BccI CCATC 3 cut(s) 34, 647, 775
BciT130I CCWGG 3 cut(s) 127, 294, 390
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 690
BfoI RGCGCY 1 cut(s) 710
BglI GCCNNNNNGGC 1 cut(s) 339
BisI GCNGC 5 cut(s) 334, 531, 579, 627, 717
BlsI GCNGC 5 cut(s) 335, 532, 580, 628, 718
BmcAI AGTACT 1 cut(s) 696
Bme1390I CCNGG 3 cut(s) 127, 294, 390
Bme18I GGWCC 1 cut(s) 656
BmeT110I CYCGRG 1 cut(s) 480
BmgT120I GGNCC 3 cut(s) 483, 484, 656
BmiI GGNNCC 4 cut(s) 67, 417, 485, 486
BmrFI CCNGG 3 cut(s) 127, 294, 390
BmrI ACTGGG 1 cut(s) 414
BmuI ACTGGG 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 733, 765
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 2 cut(s) 412, 435
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 412, 480, 481
Bse118I RCCGGY 2 cut(s) 263, 412
Bse1I ACTGG 1 cut(s) 420
Bse21I CCTNAGG 1 cut(s) 711
Bse3DI GCAATG 2 cut(s) 328, 792
BseAI TCCGGA 1 cut(s) 435
BseBI CCWGG 3 cut(s) 127, 294, 390
BseDI CCNNGG 1 cut(s) 126
BseLI CCNNNNNNNGG 4 cut(s) 40, 412, 480, 481
BseMI GCAATG 2 cut(s) 328, 792
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 3 cut(s) 666, 711, 754
BseSI GKGCMC 7 cut(s) 487, 499, 523, 547, 571, 595, 619
BseXI GCAGC 2 cut(s) 613, 728
BseYI CCCAGC 1 cut(s) 703
BsgI GTGCAG 1 cut(s) 687
Bsh1236I CGCG 1 cut(s) 259
BshFI GGCC 3 cut(s) 11, 342, 485
BshNI GGYRCC 2 cut(s) 65, 415
BshTI ACCGGT 1 cut(s) 412
BsiHKAI GWGCWC 7 cut(s) 499, 523, 547, 571, 595, 619, 751
BsiHKCI CYCGRG 1 cut(s) 480
BsiSI CCGG 3 cut(s) 264, 413, 436
BslI CCNNNNNNNGG 4 cut(s) 40, 412, 480, 481
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 3 cut(s) 11, 342, 485
BsoBI CYCGRG 1 cut(s) 480
Bsp120I GGGCCC 1 cut(s) 483
Bsp1286I GDGCHC 8 cut(s) 487, 499, 523, 547, 571, 595, 619, 751
Bsp13I TCCGGA 1 cut(s) 435
Bsp143I GATC 2 cut(s) 682, 699
BspACI CCGC 4 cut(s) 334, 531, 579, 731
BspANI GGCC 3 cut(s) 11, 342, 485
BspEI TCCGGA 1 cut(s) 435
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 4 cut(s) 67, 417, 485, 486
BspPI GGATC 1 cut(s) 694
BspQI GCTCTTC 1 cut(s) 734
BspT107I GGYRCC 2 cut(s) 65, 415
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 2 cut(s) 328, 792
BsrFI RCCGGY 2 cut(s) 263, 412
BsrI ACTGG 1 cut(s) 420
BssAI RCCGGY 2 cut(s) 263, 412
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 682, 699
Bst2UI CCWGG 3 cut(s) 127, 294, 390
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 734
BstAPI GCANNNNNTGC 6 cut(s) 503, 527, 551, 575, 599, 623
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 366, 711
BstFNI CGCG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 710
BstHHI GCGC 2 cut(s) 261, 709
BstKTI GATC 2 cut(s) 685, 702
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 682, 699
BstMWI GCNNNNNNNGC 8 cut(s) 339, 503, 527, 551, 575, 599, 623, 713
BstNI CCWGG 3 cut(s) 127, 294, 390
BstSCI CCNGG 3 cut(s) 125, 292, 388
BstSFI CTRYAG 1 cut(s) 690
BstSLI GKGCMC 7 cut(s) 487, 499, 523, 547, 571, 595, 619
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 613, 728
Bsu36I CCTNAGG 1 cut(s) 711
BsuRI GGCC 3 cut(s) 11, 342, 485
BtsI GCAGTG 4 cut(s) 525, 573, 621, 751
BtsIMutI CAGTG 4 cut(s) 525, 573, 621, 751
Cac8I GCNNGC 1 cut(s) 451
CfoI GCGC 2 cut(s) 261, 709
Cfr10I RCCGGY 2 cut(s) 263, 412
Cfr13I GGNCC 3 cut(s) 483, 484, 656
CseI GACGC 1 cut(s) 265
Csp6I GTAC 3 cut(s) 66, 416, 695
CspAI ACCGGT 1 cut(s) 412
CviAII CATG 2 cut(s) 228, 353
CviQI GTAC 3 cut(s) 66, 416, 695
DdeI CTNAG 2 cut(s) 366, 711
DpnI GATC 2 cut(s) 684, 701
DpnII GATC 2 cut(s) 682, 699
DraIII CACNNNGTG 1 cut(s) 665
EaeI YGGCCR 2 cut(s) 9, 340
Eam1104I CTCTTC 1 cut(s) 734
EarI CTCTTC 1 cut(s) 734
Eco24I GRGCYC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 656
Eco81I CCTNAGG 1 cut(s) 711
Eco88I CYCGRG 1 cut(s) 480
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 3 cut(s) 125, 292, 388
EcoT38I GRGCYC 1 cut(s) 487
FaeI CATG 2 cut(s) 231, 356
FatI CATG 2 cut(s) 227, 352
FauI CCCGC 1 cut(s) 738
Fnu4HI GCNGC 5 cut(s) 334, 531, 579, 627, 717
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 5 cut(s) 334, 531, 579, 627, 717
FspBI CTAG 1 cut(s) 426
GlaI GCGC 2 cut(s) 260, 708
GluI GCNGC 5 cut(s) 334, 531, 579, 627, 717
GsaI CCCAGC 1 cut(s) 707
HaeII RGCGCY 1 cut(s) 710
HaeIII GGCC 3 cut(s) 11, 342, 485
HapII CCGG 3 cut(s) 264, 413, 436
HgaI GACGC 1 cut(s) 265
HhaI GCGC 2 cut(s) 261, 709
Hin1II CATG 2 cut(s) 231, 356
Hin6I GCGC 2 cut(s) 259, 707
HinP1I GCGC 2 cut(s) 259, 707
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 5 cut(s) 54, 86, 439, 478, 671
HpaII CCGG 3 cut(s) 264, 413, 436
HphI GGTGA 2 cut(s) 95, 139
Hpy166II GTNNAC 9 cut(s) 99, 115, 431, 497, 521, 545, 569, 593, 617
Hpy188I TCNGA 1 cut(s) 815
Hpy188III TCNNGA 3 cut(s) 436, 680, 778
Hpy8I GTNNAC 9 cut(s) 99, 115, 431, 497, 521, 545, 569, 593, 617
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 9 cut(s) 211, 231, 497, 521, 545, 569, 593, 617, 668
HpyF10VI GCNNNNNNNGC 8 cut(s) 339, 503, 527, 551, 575, 599, 623, 713
HpyF3I CTNAG 2 cut(s) 366, 711
Hsp92II CATG 2 cut(s) 231, 356
HspAI GCGC 2 cut(s) 259, 707
Kpn2I TCCGGA 1 cut(s) 435
KpnI GGTACC 2 cut(s) 69, 419
Kzo9I GATC 2 cut(s) 682, 699
LguI GCTCTTC 1 cut(s) 734
LmnI GCTCC 1 cut(s) 724
Lsp1109I GCAGC 2 cut(s) 613, 728
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 684, 701
MbiI CCGCTC 1 cut(s) 336
MboI GATC 2 cut(s) 682, 699
MboII GAAGA 5 cut(s) 155, 295, 298, 677, 751
MfeI CAATTG 1 cut(s) 444
MhlI GDGCHC 8 cut(s) 487, 499, 523, 547, 571, 595, 619, 751
MlsI TGGCCA 2 cut(s) 11, 342
MluCI AATT 1 cut(s) 444
MluNI TGGCCA 2 cut(s) 11, 342
MlyI GAGTC 5 cut(s) 63, 80, 448, 472, 665
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 6 cut(s) 517, 565, 613, 687, 732, 775
Mox20I TGGCCA 2 cut(s) 11, 342
MroI TCCGGA 1 cut(s) 435
MscI TGGCCA 2 cut(s) 11, 342
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 2 cut(s) 11, 342
MspI CCGG 3 cut(s) 264, 413, 436
MspR9I CCNGG 3 cut(s) 127, 294, 390
MunI CAATTG 1 cut(s) 444
MvaI CCWGG 3 cut(s) 127, 294, 390
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 8 cut(s) 339, 503, 527, 551, 575, 599, 623, 713
NdeII GATC 2 cut(s) 682, 699
NlaIII CATG 2 cut(s) 231, 356
NlaIV GGNNCC 4 cut(s) 67, 417, 485, 486
NmuCI GTSAC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 734
PfoI TCCNGGA 1 cut(s) 388
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 5 cut(s) 335, 532, 580, 628, 718
PleI GAGTC 5 cut(s) 62, 80, 447, 472, 665
PpsI GAGTC 5 cut(s) 62, 80, 447, 472, 665
Psp6I CCWGG 3 cut(s) 125, 292, 388
PspFI CCCAGC 1 cut(s) 703
PspGI CCWGG 3 cut(s) 125, 292, 388
PspN4I GGNNCC 4 cut(s) 67, 417, 485, 486
PspOMI GGGCCC 1 cut(s) 483
PspPI GGNCC 3 cut(s) 483, 484, 656
RsaI GTAC 3 cut(s) 67, 417, 696
RsaNI GTAC 3 cut(s) 66, 416, 695
SapI GCTCTTC 1 cut(s) 734
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 5 cut(s) 334, 531, 579, 627, 717
Sau3AI GATC 2 cut(s) 682, 699
Sau96I GGNCC 3 cut(s) 483, 484, 656
ScaI AGTACT 1 cut(s) 696
SchI GAGTC 5 cut(s) 63, 80, 448, 472, 665
ScrFI CCNGG 3 cut(s) 127, 294, 390
SduI GDGCHC 8 cut(s) 487, 499, 523, 547, 571, 595, 619, 751
SfcI CTRYAG 1 cut(s) 690
SgrAI CRCCGGYG 1 cut(s) 263
SinI GGWCC 1 cut(s) 656
Sse9I AATT 1 cut(s) 444
SsiI CCGC 4 cut(s) 334, 531, 579, 731
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 125, 292, 388
TaaI ACNGT 1 cut(s) 151
TasI AATT 1 cut(s) 444
TatI WGTACW 1 cut(s) 694
TauI GCSGC 3 cut(s) 336, 533, 581
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 4 cut(s) 532, 580, 628, 751
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 2 cut(s) 626, 716
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 155, 298, 341
TspRI CASTG 4 cut(s) 532, 580, 628, 751
VneI GTGCAC 6 cut(s) 495, 519, 543, 567, 591, 615
VpaK11BI GGWCC 1 cut(s) 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.