Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017604

Physical Location & Seq

Genomic Coordinates Forward (+)

19605558 .. 19606882

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23992.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTTGTGAGCTAGGCGATCATCTTAAAAACAAACACAGGAGCCCTCAAATGGAGAACCACAGTGCTGATGGTCCGACCTGTGATTTGAAGGTGAATACATGTTGCGAGGAATGTGCCTCCAAAATAAAGGAAAAGTTACAGGAACTACAGGGGGTGAATTCTATAAGCACAATACATGAAGAAAAGGAGATGGACGAAAATAATGAGAAAGAACCTCATGGTAGCACAGATGATGAAGAAAAAGAGGTAGTAGTAACATATACCAAGAGGAAGGACACTGGTCGTGCCAAAATTTTCAGAAAGCGAATATCAAGGCTTGGGAAAATGGCCAGGCTTTTTGTGTCCTACAAGATCAAGAACCTTCTGATCAGTGCCCCAAAGAAATCTAAGCCTTCTGCAAATCAAGCACCACCAATATTCAACAGCGTTCCAAATTATTACAAGAAAAAAATCGTTTCCAGGGCAAAAAACTGCCAATACTGCAGTGAGAGTGATTCCGATTGCGATGAAGGTAAACAGACATATAGTAATGTGCCGAGAAGGGCGCCTGAGGGTGCCATGTATAGGCATCGTCGTCCACTCGCGCTTGTTCATCAGGCAATGATGAGGCCACCTATTTCTGTTAACAACTGGGGACCACCGCCACCACCACGTGCACCGCCACCACCACGACGACAGCCGCCCTTACTGCTGCCTCCGCATCCCCCATATGGTTTCCCAAATCCTTATGGTTACAATTTGATGCCACGGCCACATTTATATGGCTACCAAAATCCATACAATTACAACTTCATCAACGGAATGGACGTGCCTCGGCCTATGTATCCTTATTATTATGGTCAGAAACCAAGGGATCCTCCAGTTGGCAACTCATTCATCCATTTTTTAAGCGATGAGAACACAGCTAGTAGTTGCAGTATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

310

Amino Acids

35.29

Weight (kDa)

9.23

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23992
prunus_persica	Prupe.8G245500_v2.0.a1
pyrus_communis	pycom11g25760
rosa_laevigata	RLG00000012094
rosa_multiflora	Rmu_sc0002226.1_g000023
rosa_roxburghii	Rroxscaffold_7G00175810
rosa_rugosa	Rorug06G0221200
rosa_samantha	Rh6AG333800 Rh6BG340800 Rh6CG347000 Rh6DG334200
rosa_wichuraiana	Rw6G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	547, 557
AccII	CGCG	1 cut(s)	587
AciI	CCGC	4 cut(s)	644, 662, 683, 701
AclWI	GGATC	2 cut(s)	851, 864
AcoI	YGGCCR	2 cut(s)	330, 752
AcsI	RAATTY	2 cut(s)	160, 294
AcvI	CACGTG	1 cut(s)	656
AcyI	GRCGYC	1 cut(s)	548
AdeI	CACNNNGTG	1 cut(s)	656
AfiI	CCNNNNNNNGG	4 cut(s)	52, 567, 713, 866
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	91, 424
AjiI	CACGTC	1 cut(s)	811
AjnI	CCWGG	2 cut(s)	332, 461
AluBI	AGCT	2 cut(s)	13, 908
AluI	AGCT	2 cut(s)	13, 908
Alw21I	GWGCWC	1 cut(s)	661
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	2 cut(s)	851, 864
AoxI	GGCC	4 cut(s)	330, 611, 752, 818
ApaLI	GTGCAC	1 cut(s)	657
ApeKI	GCWGC	1 cut(s)	694
ApoI	RAATTY	2 cut(s)	160, 294
ArsI	GACNNNNNNTTYG	2 cut(s)	70, 102
AspLEI	GCGC	2 cut(s)	550, 589
AspS9I	GGNCC	2 cut(s)	74, 638
AsuHPI	GGTGA	2 cut(s)	106, 169
AvaII	GGWCC	2 cut(s)	74, 638
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	2 cut(s)	379, 661
BalI	TGGCCA	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	856
BanI	GGYRCC	2 cut(s)	547, 557
BanII	GRGCYC	1 cut(s)	47
BbrPI	CACGTG	1 cut(s)	656
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	1 cut(s)	681
BccI	CCATC	2 cut(s)	65, 187
BceAI	ACGGC	1 cut(s)	767
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	2 cut(s)	334, 463
BciVI	GTATCC	1 cut(s)	837
BclI	TGATCA	1 cut(s)	369
BfaI	CTAG	2 cut(s)	14, 909
BfmI	CTRYAG	2 cut(s)	149, 484
BfoI	RGCGCY	1 cut(s)	551
BfuI	GTATCC	1 cut(s)	837
BisI	GCNGC	2 cut(s)	683, 695
BlsI	GCNGC	2 cut(s)	684, 696
Bme1390I	CCNGG	2 cut(s)	334, 463
Bme18I	GGWCC	2 cut(s)	74, 638
BmgBI	CACGTC	1 cut(s)	811
BmgT120I	GGNCC	2 cut(s)	74, 638
BmiI	GGNNCC	5 cut(s)	44, 549, 559, 639, 858
BmrFI	CCNGG	2 cut(s)	334, 463
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	3 cut(s)	580, 712, 735
BmuI	ACTGGG	1 cut(s)	643
BoxI	GACNNNNGTC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	846
BsaAI	YACGTR	1 cut(s)	656
BsaHI	GRCGYC	1 cut(s)	548
BsaJI	CCNNGG	4 cut(s)	462, 749, 815, 851
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 567, 713, 866
Bse1I	ACTGG	3 cut(s)	286, 638, 863
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	334, 463
BseDI	CCNNGG	4 cut(s)	462, 749, 815, 851
BseGI	GGATG	2 cut(s)	703, 879
BseLI	CCNNNNNNNGG	4 cut(s)	52, 567, 713, 866
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	3 cut(s)	286, 638, 863
BseSI	GKGCMC	2 cut(s)	379, 661
BseXI	GCAGC	1 cut(s)	681
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	4 cut(s)	332, 613, 754, 820
BshNI	GGYRCC	2 cut(s)	547, 557
BsiHKAI	GWGCWC	1 cut(s)	661
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	4 cut(s)	52, 567, 713, 866
BsmFI	GGGAC	1 cut(s)	651
BsnI	GGCC	4 cut(s)	332, 613, 754, 820
Bsp1286I	GDGCHC	3 cut(s)	47, 379, 661
Bsp143I	GATC	4 cut(s)	19, 354, 369, 856
BspACI	CCGC	4 cut(s)	644, 662, 683, 701
BspANI	GGCC	4 cut(s)	332, 613, 754, 820
BspCNI	CTCAG	1 cut(s)	544
BspFNI	CGCG	1 cut(s)	587
BspLI	GGNNCC	5 cut(s)	44, 549, 559, 639, 858
BspMAI	CTGCAG	1 cut(s)	488
BspPI	GGATC	2 cut(s)	851, 864
BspT107I	GGYRCC	2 cut(s)	547, 557
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	3 cut(s)	286, 638, 863
BssECI	CCNNGG	4 cut(s)	462, 749, 815, 851
BssMI	GATC	4 cut(s)	19, 354, 369, 856
BssNI	GRCGYC	1 cut(s)	548
BssT1I	CCWWGG	1 cut(s)	851
Bst2UI	CCWGG	2 cut(s)	334, 463
Bst4CI	ACNGT	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	548
BstBAI	YACGTR	1 cut(s)	656
BstDEI	CTNAG	2 cut(s)	390, 552
BstDSI	CCRYGG	1 cut(s)	749
BstF5I	GGATG	2 cut(s)	703, 879
BstFNI	CGCG	1 cut(s)	587
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	2 cut(s)	550, 589
BstKTI	GATC	4 cut(s)	22, 357, 372, 859
BstMBI	GATC	4 cut(s)	19, 354, 369, 856
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 483, 691, 700
BstNI	CCWGG	2 cut(s)	334, 463
BstNSI	RCATGY	1 cut(s)	105
BstPAI	GACNNNNGTC	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	332, 461
BstSFI	CTRYAG	2 cut(s)	149, 484
BstSLI	GKGCMC	2 cut(s)	379, 661
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	1 cut(s)	681
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
Bsu36I	CCTNAGG	1 cut(s)	552
BsuI	GTATCC	1 cut(s)	837
BsuRI	GGCC	4 cut(s)	332, 613, 754, 820
BtgI	CCRYGG	1 cut(s)	749
BtgZI	GCGATG	2 cut(s)	522, 909
BtrI	CACGTC	1 cut(s)	811
BtsCI	GGATG	2 cut(s)	703, 879
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	4 cut(s)	70, 279, 379, 493
CfoI	GCGC	2 cut(s)	550, 589
Cfr13I	GGNCC	2 cut(s)	74, 638
CviAII	CATG	4 cut(s)	102, 179, 221, 562
DdeI	CTNAG	2 cut(s)	390, 552
DinI	GGCGCC	1 cut(s)	549
DpnI	GATC	4 cut(s)	21, 356, 371, 858
DpnII	GATC	4 cut(s)	19, 354, 369, 856
DraIII	CACNNNGTG	1 cut(s)	656
EaeI	YGGCCR	2 cut(s)	330, 752
Eco130I	CCWWGG	1 cut(s)	851
Eco24I	GRGCYC	1 cut(s)	47
Eco47I	GGWCC	2 cut(s)	74, 638
Eco72I	CACGTG	1 cut(s)	656
Eco81I	CCTNAGG	1 cut(s)	552
EcoRI	GAATTC	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	332, 461
EcoT14I	CCWWGG	1 cut(s)	851
EcoT38I	GRGCYC	1 cut(s)	47
EgeI	GGCGCC	1 cut(s)	549
EheI	GGCGCC	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	851
FaeI	CATG	4 cut(s)	105, 182, 224, 565
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	4 cut(s)	101, 178, 220, 561
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	683, 695
FokI	GGATG	2 cut(s)	690, 866
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	683, 695
FspBI	CTAG	2 cut(s)	14, 909
GlaI	GCGC	2 cut(s)	549, 588
GluI	GCNGC	2 cut(s)	683, 695
GsuI	CTGGAG	1 cut(s)	846
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	4 cut(s)	332, 613, 754, 820
HhaI	GCGC	2 cut(s)	550, 589
Hin1I	GRCGYC	1 cut(s)	548
Hin1II	CATG	4 cut(s)	105, 182, 224, 565
Hin6I	GCGC	2 cut(s)	548, 587
HinP1I	GCGC	2 cut(s)	548, 587
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	1 cut(s)	497
HpaI	GTTAAC	1 cut(s)	628
HphI	GGTGA	2 cut(s)	106, 169
Hpy166II	GTNNAC	4 cut(s)	518, 581, 628, 659
Hpy188I	TCNGA	5 cut(s)	78, 302, 369, 502, 846
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	4 cut(s)	518, 581, 628, 659
Hpy99I	CGWCG	2 cut(s)	579, 678
HpyAV	CCTTC	6 cut(s)	85, 268, 374, 405, 506, 537
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	2 cut(s)	655, 810
HpyCH4V	TGCA	4 cut(s)	401, 486, 659, 918
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 483, 691, 700
HpyF3I	CTNAG	2 cut(s)	390, 552
HpySE526I	ACGT	2 cut(s)	655, 810
Hsp92I	GRCGYC	1 cut(s)	548
Hsp92II	CATG	4 cut(s)	105, 182, 224, 565
HspAI	GCGC	2 cut(s)	548, 587
KasI	GGCGCC	1 cut(s)	547
Ksp22I	TGATCA	1 cut(s)	369
KspAI	GTTAAC	1 cut(s)	628
Kzo9I	GATC	4 cut(s)	19, 354, 369, 856
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	1 cut(s)	681
LweI	GCATC	3 cut(s)	580, 712, 735
MaeI	CTAG	2 cut(s)	14, 909
MaeII	ACGT	2 cut(s)	655, 810
MaeIII	GTNAC	3 cut(s)	138, 256, 734
MalI	GATC	4 cut(s)	21, 356, 371, 858
MboI	GATC	4 cut(s)	19, 354, 369, 856
MboII	GAAGA	2 cut(s)	194, 251
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	3 cut(s)	47, 379, 661
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	5 cut(s)	160, 294, 436, 739, 784
MluNI	TGGCCA	1 cut(s)	332
Mly113I	GGCGCC	1 cut(s)	548
MmeI	TCCRAC	1 cut(s)	101
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	3 cut(s)	27, 627, 890
MslI	CAYNNNNRTG	1 cut(s)	762
Msp20I	TGGCCA	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	334, 463
MvaI	CCWGG	2 cut(s)	334, 463
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	4 cut(s)	407, 483, 691, 700
NarI	GGCGCC	1 cut(s)	548
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	4 cut(s)	19, 354, 369, 856
NlaIII	CATG	4 cut(s)	105, 182, 224, 565
NlaIV	GGNNCC	5 cut(s)	44, 549, 559, 639, 858
NmeAIII	GCCGAG	2 cut(s)	564, 796
NspI	RCATGY	1 cut(s)	105
PciI	ACATGT	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	807
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	684, 696
PluTI	GGCGCC	1 cut(s)	551
PmaCI	CACGTG	1 cut(s)	656
PmlI	CACGTG	1 cut(s)	656
Ppu21I	YACGTR	1 cut(s)	656
PscI	ACATGT	1 cut(s)	101
PshAI	GACNNNNGTC	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	332, 461
PspCI	CACGTG	1 cut(s)	656
PspGI	CCWGG	2 cut(s)	332, 461
PspN4I	GGNNCC	5 cut(s)	44, 549, 559, 639, 858
PspPI	GGNCC	2 cut(s)	74, 638
PstI	CTGCAG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	856
RseI	CAYNNNNRTG	1 cut(s)	762
SaqAI	TTAA	3 cut(s)	27, 627, 890
SatI	GCNGC	2 cut(s)	683, 695
Sau3AI	GATC	4 cut(s)	19, 354, 369, 856
Sau96I	GGNCC	2 cut(s)	74, 638
ScrFI	CCNGG	2 cut(s)	334, 463
SduI	GDGCHC	3 cut(s)	47, 379, 661
SfaNI	GCATC	3 cut(s)	580, 712, 735
SfcI	CTRYAG	2 cut(s)	149, 484
SfoI	GGCGCC	1 cut(s)	549
SinI	GGWCC	2 cut(s)	74, 638
SmiMI	CAYNNNNRTG	1 cut(s)	762
Sse9I	AATT	5 cut(s)	160, 294, 436, 739, 784
SsiI	CCGC	4 cut(s)	644, 662, 683, 701
SspDI	GGCGCC	1 cut(s)	547
SspI	AATATT	1 cut(s)	420
SspMI	CTAG	2 cut(s)	14, 909
StyD4I	CCNGG	2 cut(s)	332, 461
StyI	CCWWGG	1 cut(s)	851
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	2 cut(s)	658, 813
TasI	AATT	5 cut(s)	160, 294, 436, 739, 784
TauI	GCSGC	1 cut(s)	685
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	3 cut(s)	27, 627, 890
Tru9I	TTAA	3 cut(s)	27, 627, 890
TscAI	CASTG	4 cut(s)	70, 286, 379, 493
TseI	GCWGC	1 cut(s)	694
TspDTI	ATGAA	6 cut(s)	195, 252, 525, 584, 784, 868
TspGWI	ACGGA	1 cut(s)	816
TspRI	CASTG	4 cut(s)	70, 286, 379, 493
VneI	GTGCAC	1 cut(s)	657
VpaK11BI	GGWCC	2 cut(s)	74, 638
XapI	RAATTY	2 cut(s)	160, 294
XceI	RCATGY	1 cut(s)	105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XspI	CTAG	2 cut(s)	14, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.