Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0017604

Physical Location & Seq

Genomic Coordinates Forward (+)

21331704 .. 21332399

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G245500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTAGCAGTTTCTGGTGAGGCAGATCCAGCCACAATCTTAGTGACAATTGCAAAGCTTAAGATTAGGACAGAGCTTGTGTCCTACAAGGACCCTCGTGCTGCCCAAAAGAAAAAACAAGCACAACGATTGAAGAACACTCAAAATCATCATCACCACCCCAAAGCCAAGGACACGAAAAAGATCATCGATCATCACAATGATCATAATCATGATCATTCAAATTCTGATTCTGATTCTGACGATCAGATTGATGGAGATGATCATGGTCGTAGACATAAAATTAAGAAGCCAGCCAATGTTAATGATCCATTTGTTGCACCCCATGGCAAGGGCAATTTCCCCAAGCCAAAACCGCTTGGGCCAAAAAACAATTGGGCCCGAGGGATGTACGGGAGGCCACCGCCAGGTCCACCGCCTGCATTTCCACTGCCGCCATGGCCACCAATGCCGCCACATGCATATGGTGGTTATGGTCACCACTCGAGCATGGCACCGCTGCCACGACCGCCGCCACATGCATATGGTGGTAATGGTCACCACTCGAGCATGGCACCGCTGCCACGACCGCCGCCACCATTGCAAATGTATCCTTATCCTTATTATCATCGAACAAAGGAACCGCCGGTTGGCAACTCAATGCTCCATTATTTCAGCGACGATAACACTAGCAGTAGTGCTTGCACCATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

232

Amino Acids

25.64

Weight (kDa)

9.59

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23992
prunus_persica	Prupe.8G245500_v2.0.a1
pyrus_communis	pycom11g25760
rosa_laevigata	RLG00000012094
rosa_multiflora	Rmu_sc0002226.1_g000023
rosa_roxburghii	Rroxscaffold_7G00175810
rosa_rugosa	Rorug06G0221200
rosa_samantha	Rh6AG333800 Rh6BG340800 Rh6CG347000 Rh6DG334200
rosa_wichuraiana	Rw6G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	493, 553
AccI	GTMKAC	1 cut(s)	274
AclWI	GGATC	2 cut(s)	20, 302
AcoI	YGGCCR	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	223
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	3 cut(s)	331, 407, 629
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	133, 222
AjnI	CCWGG	1 cut(s)	406
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AluBI	AGCT	2 cut(s)	58, 76
AluI	AGCT	2 cut(s)	58, 76
AlwI	GGATC	2 cut(s)	20, 302
AlwNI	CAGNNNCTG	1 cut(s)	14
Ama87I	CYCGRG	3 cut(s)	381, 484, 544
AoxI	GGCC	4 cut(s)	362, 378, 398, 440
ApaI	GGGCCC	1 cut(s)	382
ApeKI	GCWGC	3 cut(s)	101, 499, 559
ApoI	RAATTY	1 cut(s)	223
AspS9I	GGNCC	5 cut(s)	91, 362, 378, 379, 410
AsuHPI	GGTGA	4 cut(s)	29, 146, 470, 530
AvaI	CYCGRG	3 cut(s)	381, 484, 544
AvaII	GGWCC	2 cut(s)	91, 410
BaeGI	GKGCMC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	442
BanI	GGYRCC	2 cut(s)	493, 553
BanII	GRGCYC	1 cut(s)	382
BauI	CACGAG	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	88, 486, 546
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	408
BciVI	GTATCC	1 cut(s)	600
BclI	TGATCA	3 cut(s)	202, 214, 262
BfaI	CTAG	1 cut(s)	669
BfrI	CTTAAG	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	600
BglI	GCCNNNNNGGC	1 cut(s)	439
BisI	GCNGC	7 cut(s)	102, 434, 452, 500, 512, 560, 572
BlsI	GCNGC	7 cut(s)	103, 435, 453, 501, 513, 561, 573
Bme1390I	CCNGG	1 cut(s)	408
Bme18I	GGWCC	2 cut(s)	91, 410
BmeT110I	CYCGRG	3 cut(s)	381, 484, 544
BmgT120I	GGNCC	5 cut(s)	91, 362, 378, 379, 410
BmiI	GGNNCC	5 cut(s)	93, 380, 495, 555, 621
BmrFI	CCNGG	1 cut(s)	408
Bsa29I	ATCGAT	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	4 cut(s)	168, 325, 382, 437
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 407, 629
Bse118I	RCCGGY	1 cut(s)	625
Bse3DI	GCAATG	1 cut(s)	578
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	408
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	4 cut(s)	168, 325, 382, 437
BseGI	GGATG	1 cut(s)	393
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	3 cut(s)	331, 407, 629
BseMI	GCAATG	1 cut(s)	578
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	3 cut(s)	88, 486, 546
Bsh1285I	CGRYCG	2 cut(s)	509, 569
BshFI	GGCC	4 cut(s)	364, 380, 400, 442
BshNI	GGYRCC	2 cut(s)	493, 553
BshVI	ATCGAT	1 cut(s)	189
BsiEI	CGRYCG	2 cut(s)	509, 569
BsiHKCI	CYCGRG	3 cut(s)	381, 484, 544
BsiSI	CCGG	1 cut(s)	626
BslI	CCNNNNNNNGG	3 cut(s)	331, 407, 629
BsnI	GGCC	4 cut(s)	364, 380, 400, 442
BsoBI	CYCGRG	3 cut(s)	381, 484, 544
Bsp120I	GGGCCC	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	8 cut(s)	25, 183, 190, 202, 214, 244, 262, 307
Bsp19I	CCATGG	2 cut(s)	325, 437
BspANI	GGCC	4 cut(s)	364, 380, 400, 442
BspDI	ATCGAT	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	5 cut(s)	93, 380, 495, 555, 621
BspPI	GGATC	2 cut(s)	20, 302
BspT107I	GGYRCC	2 cut(s)	493, 553
BspTI	CTTAAG	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	578
BsrFI	RCCGGY	1 cut(s)	625
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	4 cut(s)	168, 325, 382, 437
BssMI	GATC	8 cut(s)	25, 183, 190, 202, 214, 244, 262, 307
BssSI	CACGAG	1 cut(s)	96
BssT1I	CCWWGG	3 cut(s)	168, 325, 437
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	408
BstAFI	CTTAAG	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	294, 420, 682
BstDEI	CTNAG	1 cut(s)	40
BstDSI	CCRYGG	2 cut(s)	325, 437
BstEII	GGTNACC	2 cut(s)	476, 536
BstF5I	GGATG	1 cut(s)	393
BstKTI	GATC	8 cut(s)	28, 186, 193, 205, 217, 247, 265, 310
BstMBI	GATC	8 cut(s)	25, 183, 190, 202, 214, 244, 262, 307
BstMCI	CGRYCG	2 cut(s)	509, 569
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 355, 439, 448, 508, 568, 580
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	2 cut(s)	461, 521
BstPI	GGTNACC	2 cut(s)	476, 536
BstSCI	CCNGG	1 cut(s)	406
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	3 cut(s)	88, 486, 546
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	600
BsuRI	GGCC	4 cut(s)	364, 380, 400, 442
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	2 cut(s)	325, 437
BtsCI	GGATG	1 cut(s)	393
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	3 cut(s)	294, 420, 682
CaiI	CAGNNNCTG	1 cut(s)	14
CciI	TCATGA	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	5 cut(s)	91, 362, 378, 379, 410
ClaI	ATCGAT	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	8 cut(s)	212, 266, 326, 438, 458, 490, 518, 550
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	8 cut(s)	27, 185, 192, 204, 216, 246, 264, 309
DpnII	GATC	8 cut(s)	25, 183, 190, 202, 214, 244, 262, 307
EaeI	YGGCCR	1 cut(s)	440
Eco130I	CCWWGG	3 cut(s)	168, 325, 437
Eco24I	GRGCYC	1 cut(s)	382
Eco47I	GGWCC	2 cut(s)	91, 410
Eco88I	CYCGRG	3 cut(s)	381, 484, 544
Eco91I	GGTNACC	2 cut(s)	476, 536
EcoO109I	RGGNCCY	1 cut(s)	91
EcoO65I	GGTNACC	2 cut(s)	476, 536
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	3 cut(s)	168, 325, 437
EcoT22I	ATGCAT	2 cut(s)	463, 523
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	3 cut(s)	168, 325, 437
FaeI	CATG	8 cut(s)	215, 269, 329, 441, 461, 493, 521, 553
FatI	CATG	8 cut(s)	211, 265, 325, 437, 457, 489, 517, 549
FauNDI	CATATG	2 cut(s)	463, 523
FbaI	TGATCA	3 cut(s)	202, 214, 262
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	7 cut(s)	102, 434, 452, 500, 512, 560, 572
FokI	GGATG	1 cut(s)	400
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	7 cut(s)	102, 434, 452, 500, 512, 560, 572
FspBI	CTAG	1 cut(s)	669
GluI	GCNGC	7 cut(s)	102, 434, 452, 500, 512, 560, 572
HaeIII	GGCC	4 cut(s)	364, 380, 400, 442
HapII	CCGG	1 cut(s)	626
Hin1II	CATG	8 cut(s)	215, 269, 329, 441, 461, 493, 521, 553
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	2 cut(s)	230, 236
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	4 cut(s)	29, 146, 470, 530
Hpy166II	GTNNAC	2 cut(s)	275, 413
Hpy188I	TCNGA	4 cut(s)	229, 235, 241, 249
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	2 cut(s)	275, 413
Hpy99I	CGWCG	1 cut(s)	662
HpyCH4V	TGCA	7 cut(s)	53, 320, 422, 461, 521, 583, 684
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 355, 439, 448, 508, 568, 580
HpyF3I	CTNAG	1 cut(s)	40
Hsp92II	CATG	8 cut(s)	215, 269, 329, 441, 461, 493, 521, 553
Ksp22I	TGATCA	3 cut(s)	202, 214, 262
Kzo9I	GATC	8 cut(s)	25, 183, 190, 202, 214, 244, 262, 307
LmnI	GCTCC	1 cut(s)	648
LpnPI	CCDG	6 cut(s)	42, 306, 393, 420, 432, 639
Lsp1109I	GCAGC	3 cut(s)	88, 486, 546
MaeI	CTAG	1 cut(s)	669
MaeIII	GTNAC	3 cut(s)	43, 476, 536
MalI	GATC	8 cut(s)	27, 185, 192, 204, 216, 246, 264, 309
MboI	GATC	8 cut(s)	25, 183, 190, 202, 214, 244, 262, 307
MboII	GAAGA	1 cut(s)	145
MfeI	CAATTG	2 cut(s)	48, 373
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	382
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	5 cut(s)	48, 223, 282, 337, 373
MluNI	TGGCCA	1 cut(s)	442
MnlI	CCTC	4 cut(s)	13, 105, 377, 390
Mox20I	TGGCCA	1 cut(s)	442
Mph1103I	ATGCAT	2 cut(s)	463, 523
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	3 cut(s)	60, 285, 303
MslI	CAYNNNNRTG	5 cut(s)	198, 210, 462, 522, 689
Msp20I	TGGCCA	1 cut(s)	442
MspA1I	CMGCKG	2 cut(s)	499, 559
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	2 cut(s)	48, 373
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	7 cut(s)	29, 355, 439, 448, 508, 568, 580
NcoI	CCATGG	2 cut(s)	325, 437
NdeI	CATATG	2 cut(s)	463, 523
NdeII	GATC	8 cut(s)	25, 183, 190, 202, 214, 244, 262, 307
NlaIII	CATG	8 cut(s)	215, 269, 329, 441, 461, 493, 521, 553
NlaIV	GGNNCC	5 cut(s)	93, 380, 495, 555, 621
NmuCI	GTSAC	3 cut(s)	43, 476, 536
NsiI	ATGCAT	2 cut(s)	463, 523
NspI	RCATGY	2 cut(s)	461, 521
PaeR7I	CTCGAG	2 cut(s)	484, 544
PagI	TCATGA	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	230, 236
PkrI	GCNGC	7 cut(s)	103, 435, 453, 501, 513, 561, 573
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	406
PspEI	GGTNACC	2 cut(s)	476, 536
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	5 cut(s)	93, 380, 495, 555, 621
PspOMI	GGGCCC	1 cut(s)	378
PspPI	GGNCC	5 cut(s)	91, 362, 378, 379, 410
PspPPI	RGGWCCY	1 cut(s)	91
PspXI	VCTCGAGB	2 cut(s)	484, 544
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	5 cut(s)	198, 210, 462, 522, 689
SaqAI	TTAA	3 cut(s)	60, 285, 303
SatI	GCNGC	7 cut(s)	102, 434, 452, 500, 512, 560, 572
Sau3AI	GATC	8 cut(s)	25, 183, 190, 202, 214, 244, 262, 307
Sau96I	GGNCC	5 cut(s)	91, 362, 378, 379, 410
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	3 cut(s)	60, 78, 412
Sfr274I	CTCGAG	2 cut(s)	484, 544
SinI	GGWCC	2 cut(s)	91, 410
SlaI	CTCGAG	2 cut(s)	484, 544
SmiMI	CAYNNNNRTG	5 cut(s)	198, 210, 462, 522, 689
SmlI	CTYRAG	3 cut(s)	59, 484, 544
SmoI	CTYRAG	3 cut(s)	59, 484, 544
Sse9I	AATT	5 cut(s)	48, 223, 282, 337, 373
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	3 cut(s)	168, 325, 437
TaqI	TCGA	4 cut(s)	189, 485, 545, 610
TasI	AATT	5 cut(s)	48, 223, 282, 337, 373
TauI	GCSGC	4 cut(s)	436, 454, 514, 574
TfiI	GAWTC	2 cut(s)	230, 236
Tru1I	TTAA	3 cut(s)	60, 285, 303
Tru9I	TTAA	3 cut(s)	60, 285, 303
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	3 cut(s)	43, 476, 536
TseI	GCWGC	3 cut(s)	101, 499, 559
Tsp45I	GTSAC	3 cut(s)	43, 476, 536
TspRI	CASTG	1 cut(s)	435
Vha464I	CTTAAG	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	91, 410
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	2 cut(s)	461, 521
XcmI	CCANNNNNNNNNTGG	2 cut(s)	372, 435
XhoI	CTCGAG	2 cut(s)	484, 544
XmiI	GTMKAC	1 cut(s)	274
XspI	CTAG	1 cut(s)	669
Zsp2I	ATGCAT	2 cut(s)	463, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.