Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017604

Physical Location & Seq

Genomic Coordinates Forward (+)

53736021 .. 53737323

Gene Structure 1303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG347000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAGAACCACAGTGCTGATGGTCCGACTTGTGATTTGAAGGTGAATACATGTTGCAAGGAATGTGCCTTTAAAATAAAGGAAAAGTTACAAGAACTAAATGGAGTGAATTCTATCAGTACAATACATGAAGTAAAGGAGTTGGTACAAGATACTAATGAGAAAGAAGCACAAGGTGGCATAGATGAAGAAAAAGAGGTGGTAACATATTCCAAGAGGAAGGACACTCGTTGTGCTAAAATATTAAGAAGGCGAATATCAAGGCTCGGGAAAATGGCCTGGTTTCTTGTTTCCTACAAGATCAAGAACCTTCTGGGTGCCCCAAAGATATCTAAGCCTTCTGCAAATCAAGCACCACCATTCAACAGCGTTCCAAATGATTACAAGAAAAAAATCGTTTCCAGGGCAAGAAACTGCCAATACTGCAGTGAGAGTGATAATTCCGATTGCGATGAAGATGAACGCACCTATAATAATGTGCCAAGAAGGGCGCCTAAGGGTACCATGTATAGGCCTCGTCCTCCACTCGCGCTTGTTCACCAGGTAAGGCCGAGGCCATATGTTTACGCGAGCAACTGGGGAAGACCACCACCACCACAGCCGCCCTTATTACCGCCGCCGCCTCCCCCATATGGGTACCAAAACCCTTATGGTTACAATTTGATGCCGCCGCCACATTTATATGGTTACCAAAATAACCCTTACAATTACAACTTCATCAACGGAATGGTGCCCCAGCCTCTGTATCCTTATTATTATGGTCAGAAACCAAGGGATCCCCCAGTTGGCAACTCATTCATCCATTTTTTAAGCGATGATAACACAGCTAGTAGTTGCAGTCTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

282

Amino Acids

32.17

Weight (kDa)

9.13

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23992
prunus_persica	Prupe.8G245500_v2.0.a1
pyrus_communis	pycom11g25760
rosa_laevigata	RLG00000012094
rosa_multiflora	Rmu_sc0002226.1_g000023
rosa_roxburghii	Rroxscaffold_7G00175810
rosa_rugosa	Rorug06G0221200
rosa_samantha	Rh6AG333800 Rh6BG340800 Rh6CG347000 Rh6DG334200
rosa_wichuraiana	Rw6G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	500, 636
AccB1I	GGYRCC	5 cut(s)	317, 490, 500, 636, 730
AccII	CGCG	2 cut(s)	530, 569
AciI	CCGC	6 cut(s)	602, 614, 617, 620, 668, 671
AclWI	GGATC	2 cut(s)	770, 783
AcsI	RAATTY	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	491
AdeI	CACNNNGTG	1 cut(s)	176
AfaI	GTAC	4 cut(s)	121, 147, 502, 638
AfiI	CCNNNNNNNGG	4 cut(s)	510, 632, 633, 785
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	40, 364
AjnI	CCWGG	3 cut(s)	278, 401, 540
AluBI	AGCT	1 cut(s)	827
AluI	AGCT	1 cut(s)	827
AlwI	GGATC	2 cut(s)	770, 783
AlwNI	CAGNNNCTG	1 cut(s)	742
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	4 cut(s)	276, 512, 548, 554
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
Asp718I	GGTACC	2 cut(s)	500, 636
AspLEI	GCGC	2 cut(s)	493, 532
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	55, 530
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	23
AxyI	CCTNAGG	1 cut(s)	495
BaeGI	GKGCMC	2 cut(s)	322, 735
BamHI	GGATCC	1 cut(s)	775
BanI	GGYRCC	5 cut(s)	317, 490, 500, 636, 730
BbsI	GAAGAC	1 cut(s)	589
BccI	CCATC	1 cut(s)	14
BciT130I	CCWGG	3 cut(s)	280, 403, 542
BciVI	GTATCC	1 cut(s)	756
BfaI	CTAG	1 cut(s)	828
BfmI	CTRYAG	1 cut(s)	424
BfoI	RGCGCY	1 cut(s)	494
BfuI	GTATCC	1 cut(s)	756
BisI	GCNGC	5 cut(s)	602, 617, 620, 668, 671
BlsI	GCNGC	5 cut(s)	603, 618, 621, 669, 672
Bme1390I	CCNGG	3 cut(s)	280, 403, 542
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	6 cut(s)	319, 492, 502, 638, 732, 777
BmrFI	CCNGG	3 cut(s)	280, 403, 542
BmrI	ACTGGG	2 cut(s)	586, 776
BmsI	GCATC	1 cut(s)	654
BmuI	ACTGGG	2 cut(s)	586, 776
BpiI	GAAGAC	1 cut(s)	589
BsaHI	GRCGYC	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	402, 551, 770
Bsc4I	CCNNNNNNNGG	4 cut(s)	510, 632, 633, 785
Bse1I	ACTGG	2 cut(s)	581, 782
Bse21I	CCTNAGG	1 cut(s)	495
BseBI	CCWGG	3 cut(s)	280, 403, 542
BseDI	CCNNGG	3 cut(s)	402, 551, 770
BseGI	GGATG	1 cut(s)	798
BseLI	CCNNNNNNNGG	4 cut(s)	510, 632, 633, 785
BseNI	ACTGG	2 cut(s)	581, 782
BseSI	GKGCMC	2 cut(s)	322, 735
BseYI	CCCAGC	1 cut(s)	735
Bsh1236I	CGCG	2 cut(s)	530, 569
BshFI	GGCC	4 cut(s)	278, 514, 550, 556
BshNI	GGYRCC	5 cut(s)	317, 490, 500, 636, 730
BsiHKCI	CYCGRG	1 cut(s)	266
BslI	CCNNNNNNNGG	4 cut(s)	510, 632, 633, 785
BsnI	GGCC	4 cut(s)	278, 514, 550, 556
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	322, 735
Bsp143I	GATC	2 cut(s)	300, 775
BspACI	CCGC	6 cut(s)	602, 614, 617, 620, 668, 671
BspANI	GGCC	4 cut(s)	278, 514, 550, 556
BspFNI	CGCG	2 cut(s)	530, 569
BspLI	GGNNCC	6 cut(s)	319, 492, 502, 638, 732, 777
BspMAI	CTGCAG	1 cut(s)	428
BspPI	GGATC	2 cut(s)	770, 783
BspT107I	GGYRCC	5 cut(s)	317, 490, 500, 636, 730
BsrI	ACTGG	2 cut(s)	581, 782
BssECI	CCNNGG	3 cut(s)	402, 551, 770
BssMI	GATC	2 cut(s)	300, 775
BssNI	GRCGYC	1 cut(s)	491
BssT1I	CCWWGG	1 cut(s)	770
Bst2UI	CCWGG	3 cut(s)	280, 403, 542
Bst4CI	ACNGT	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	2 cut(s)	333, 495
BstEII	GGTNACC	1 cut(s)	686
BstF5I	GGATG	1 cut(s)	798
BstFNI	CGCG	2 cut(s)	530, 569
BstH2I	RGCGCY	1 cut(s)	494
BstHHI	GCGC	2 cut(s)	493, 532
BstKTI	GATC	2 cut(s)	303, 778
BstMBI	GATC	2 cut(s)	300, 775
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 423
BstNI	CCWGG	3 cut(s)	280, 403, 542
BstNSI	RCATGY	1 cut(s)	54
BstPI	GGTNACC	1 cut(s)	686
BstSCI	CCNGG	3 cut(s)	278, 401, 540
BstSFI	CTRYAG	1 cut(s)	424
BstSLI	GKGCMC	2 cut(s)	322, 735
BstUI	CGCG	2 cut(s)	530, 569
BstV2I	GAAGAC	1 cut(s)	589
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
Bsu36I	CCTNAGG	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	756
BsuRI	GGCC	4 cut(s)	278, 514, 550, 556
BtgZI	GCGATG	2 cut(s)	465, 828
BtsCI	GGATG	1 cut(s)	798
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	19, 433
Cac8I	GCNNGC	1 cut(s)	571
CaiI	CAGNNNCTG	1 cut(s)	742
CfoI	GCGC	2 cut(s)	493, 532
Cfr13I	GGNCC	1 cut(s)	23
CsiI	ACCWGGT	1 cut(s)	540
Csp6I	GTAC	4 cut(s)	120, 146, 501, 637
CviAII	CATG	3 cut(s)	51, 128, 505
CviJI	RGCY	9 cut(s)	265, 278, 337, 514, 550, 556, 601, 739, 827
CviKI_1	RGCY	9 cut(s)	265, 278, 337, 514, 550, 556, 601, 739, 827
CviQI	GTAC	4 cut(s)	120, 146, 501, 637
DdeI	CTNAG	2 cut(s)	333, 495
DinI	GGCGCC	1 cut(s)	492
DpnI	GATC	2 cut(s)	302, 777
DpnII	GATC	2 cut(s)	300, 775
DraI	TTTAAA	1 cut(s)	73
DraIII	CACNNNGTG	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	770
Eco147I	AGGCCT	1 cut(s)	514
Eco32I	GATATC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	686
EcoO65I	GGTNACC	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	3 cut(s)	278, 401, 540
EcoRV	GATATC	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	770
EgeI	GGCGCC	1 cut(s)	492
EheI	GGCGCC	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	3 cut(s)	54, 131, 508
FatI	CATG	3 cut(s)	50, 127, 504
FauNDI	CATATG	2 cut(s)	559, 631
Fnu4HI	GCNGC	5 cut(s)	602, 617, 620, 668, 671
FokI	GGATG	1 cut(s)	785
Fsp4HI	GCNGC	5 cut(s)	602, 617, 620, 668, 671
FspBI	CTAG	1 cut(s)	828
GlaI	GCGC	2 cut(s)	492, 531
GluI	GCNGC	5 cut(s)	602, 617, 620, 668, 671
GsaI	CCCAGC	1 cut(s)	739
HaeII	RGCGCY	1 cut(s)	494
HaeIII	GGCC	4 cut(s)	278, 514, 550, 556
HhaI	GCGC	2 cut(s)	493, 532
Hin1I	GRCGYC	1 cut(s)	491
Hin1II	CATG	3 cut(s)	54, 131, 508
Hin6I	GCGC	2 cut(s)	491, 530
HinP1I	GCGC	2 cut(s)	491, 530
HphI	GGTGA	2 cut(s)	55, 530
Hpy166II	GTNNAC	2 cut(s)	538, 565
Hpy188I	TCNGA	3 cut(s)	27, 445, 765
Hpy188III	TCNNGA	2 cut(s)	268, 304
Hpy8I	GTNNAC	2 cut(s)	538, 565
HpyAV	CCTTC	6 cut(s)	34, 214, 243, 320, 348, 480
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	4 cut(s)	57, 344, 426, 837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 423
HpyF3I	CTNAG	2 cut(s)	333, 495
Hsp92I	GRCGYC	1 cut(s)	491
Hsp92II	CATG	3 cut(s)	54, 131, 508
HspAI	GCGC	2 cut(s)	491, 530
KasI	GGCGCC	1 cut(s)	490
KpnI	GGTACC	2 cut(s)	504, 640
Kzo9I	GATC	2 cut(s)	300, 775
LweI	GCATC	1 cut(s)	654
MabI	ACCWGGT	1 cut(s)	540
MaeI	CTAG	1 cut(s)	828
MaeIII	GTNAC	4 cut(s)	87, 202, 653, 686
MalI	GATC	2 cut(s)	302, 777
MboI	GATC	2 cut(s)	300, 775
MboII	GAAGA	3 cut(s)	200, 467, 594
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	2 cut(s)	322, 735
MluCI	AATT	4 cut(s)	109, 439, 658, 706
Mly113I	GGCGCC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	7 cut(s)	190, 210, 525, 531, 546, 633, 750
MseI	TTAA	3 cut(s)	72, 245, 809
MslI	CAYNNNNRTG	1 cut(s)	681
MspR9I	CCNGG	3 cut(s)	280, 403, 542
MvaI	CCWGG	3 cut(s)	280, 403, 542
MvnI	CGCG	2 cut(s)	530, 569
MwoI	GCNNNNNNNGC	2 cut(s)	350, 423
NarI	GGCGCC	1 cut(s)	491
NdeI	CATATG	2 cut(s)	559, 631
NdeII	GATC	2 cut(s)	300, 775
NlaIII	CATG	3 cut(s)	54, 131, 508
NlaIV	GGNNCC	6 cut(s)	319, 492, 502, 638, 732, 777
NmeAIII	GCCGAG	1 cut(s)	576
NspI	RCATGY	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	514
PciI	ACATGT	1 cut(s)	50
PkrI	GCNGC	5 cut(s)	603, 618, 621, 669, 672
PluTI	GGCGCC	1 cut(s)	494
PscI	ACATGT	1 cut(s)	50
Psp6I	CCWGG	3 cut(s)	278, 401, 540
PspEI	GGTNACC	1 cut(s)	686
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	3 cut(s)	278, 401, 540
PspN4I	GGNNCC	6 cut(s)	319, 492, 502, 638, 732, 777
PspPI	GGNCC	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	428
PstNI	CAGNNNCTG	1 cut(s)	742
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	4 cut(s)	121, 147, 502, 638
RsaNI	GTAC	4 cut(s)	120, 146, 501, 637
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	3 cut(s)	72, 245, 809
SatI	GCNGC	5 cut(s)	602, 617, 620, 668, 671
Sau3AI	GATC	2 cut(s)	300, 775
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	3 cut(s)	280, 403, 542
SduI	GDGCHC	2 cut(s)	322, 735
SetI	ASST	7 cut(s)	45, 178, 201, 312, 470, 546, 829
SexAI	ACCWGGT	1 cut(s)	540
SfaNI	GCATC	1 cut(s)	654
SfcI	CTRYAG	1 cut(s)	424
SfoI	GGCGCC	1 cut(s)	492
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	681
Sse9I	AATT	4 cut(s)	109, 439, 658, 706
SseBI	AGGCCT	1 cut(s)	514
SsiI	CCGC	6 cut(s)	602, 614, 617, 620, 668, 671
SspDI	GGCGCC	1 cut(s)	490
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	828
StuI	AGGCCT	1 cut(s)	514
StyD4I	CCNGG	3 cut(s)	278, 401, 540
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	1 cut(s)	14
TasI	AATT	4 cut(s)	109, 439, 658, 706
TatI	WGTACW	1 cut(s)	119
TauI	GCSGC	5 cut(s)	604, 619, 622, 670, 673
Tru1I	TTAA	3 cut(s)	72, 245, 809
Tru9I	TTAA	3 cut(s)	72, 245, 809
TscAI	CASTG	2 cut(s)	19, 433
TspDTI	ATGAA	6 cut(s)	144, 201, 468, 474, 706, 787
TspGWI	ACGGA	1 cut(s)	738
TspRI	CASTG	2 cut(s)	19, 433
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	1 cut(s)	109
XceI	RCATGY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	2 cut(s)	17, 647
XspI	CTAG	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.