Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0017604

Physical Location & Seq

Genomic Coordinates Forward (+)

53185973 .. 53187273

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G029060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAGAACCACAGTGCTGATGGTCCGACTTGTGATTTGAAGGTGAATACATGTTGCAAGGAATGTGCCTTTAAAATAAAGGAAAAGTTACAAGAACTAAATGAAGCACATGGTGGCATAGATGAAGAAAAAGAGGTGGTAACATATTCCAAGAGGAAGGACACTCGTTGTGCTAAAATATTAAGAAGGCGAATATCAAGGCTCGGGAAAATGGCCTGGTTTCTTGTTTCCTACAAGACCAAGAACCTTCTGGGTGCCCCAAAGATATCTAAGCCTTCTGCAAATCAAGCACCACCATTCAACAGCGTTCCAAATGATTACAAGAAAAAAATCGTTTCCAGGGCAAGAAACTGCCAATACTGCAGTGAGAGTGATAATTCCGATTGCGATGAAGATGAACGCACCTATAATAATGTGCCAAGAATGGCGCCTAAGGGTACCATGTATAGGCCTCGTCCTCCACTCGCGCTTGTTCACCAGGTAAGGCCGAGGCCATATATTTACGCGAACAACTGGGGAAGACCACCACCACCACAGCCGCCCTTATTGCCGCCGCCGCCTCCCCCATATGGGTACCAAAACCCTTATGGTTACAATTTGATGCCGCCGCCACATTTATATGGTTACCAAAATAACCCTTACAATTACAACTTCATAAACGGAATGGTGCCCCAGCCTCTGTATCCTTATTATTATGGTCAGAAACCAAGGGATCCCCCAGTTGGCAACTCATTCATCCATTTTTTAAGCGATGATAACACAGCTAGTAGTTGCAGTCTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

261

Amino Acids

29.86

Weight (kDa)

9.21

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23992
prunus_persica	Prupe.8G245500_v2.0.a1
pyrus_communis	pycom11g25760
rosa_laevigata	RLG00000012094
rosa_multiflora	Rmu_sc0002226.1_g000023
rosa_roxburghii	Rroxscaffold_7G00175810
rosa_rugosa	Rorug06G0221200
rosa_samantha	Rh6AG333800 Rh6BG340800 Rh6CG347000 Rh6DG334200
rosa_wichuraiana	Rw6G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	437, 573
AccB1I	GGYRCC	5 cut(s)	254, 427, 437, 573, 667
AccII	CGCG	2 cut(s)	467, 506
AciI	CCGC	6 cut(s)	539, 551, 554, 557, 605, 608
AclWI	GGATC	2 cut(s)	707, 720
AcyI	GRCGYC	1 cut(s)	428
AdeI	CACNNNGTG	1 cut(s)	113
AfaI	GTAC	2 cut(s)	439, 575
AfiI	CCNNNNNNNGG	4 cut(s)	447, 569, 570, 722
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	40, 301
AjnI	CCWGG	3 cut(s)	215, 338, 477
AluBI	AGCT	1 cut(s)	764
AluI	AGCT	1 cut(s)	764
AlwI	GGATC	2 cut(s)	707, 720
AlwNI	CAGNNNCTG	1 cut(s)	679
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	4 cut(s)	213, 449, 485, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
Asp718I	GGTACC	2 cut(s)	437, 573
AspLEI	GCGC	2 cut(s)	430, 469
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	55, 467
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	23
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	2 cut(s)	259, 672
BamHI	GGATCC	1 cut(s)	712
BanI	GGYRCC	5 cut(s)	254, 427, 437, 573, 667
BbsI	GAAGAC	1 cut(s)	526
BccI	CCATC	1 cut(s)	14
BciT130I	CCWGG	3 cut(s)	217, 340, 479
BciVI	GTATCC	1 cut(s)	693
BfaI	CTAG	1 cut(s)	765
BfmI	CTRYAG	1 cut(s)	361
BfoI	RGCGCY	1 cut(s)	431
BfuI	GTATCC	1 cut(s)	693
BisI	GCNGC	6 cut(s)	539, 551, 554, 557, 605, 608
BlsI	GCNGC	6 cut(s)	540, 552, 555, 558, 606, 609
Bme1390I	CCNGG	3 cut(s)	217, 340, 479
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	6 cut(s)	256, 429, 439, 575, 669, 714
BmrFI	CCNGG	3 cut(s)	217, 340, 479
BmrI	ACTGGG	2 cut(s)	523, 713
BmsI	GCATC	1 cut(s)	591
BmuI	ACTGGG	2 cut(s)	523, 713
BpiI	GAAGAC	1 cut(s)	526
BsaHI	GRCGYC	1 cut(s)	428
BsaJI	CCNNGG	3 cut(s)	339, 488, 707
Bsc4I	CCNNNNNNNGG	4 cut(s)	447, 569, 570, 722
Bse1I	ACTGG	2 cut(s)	518, 719
Bse21I	CCTNAGG	1 cut(s)	432
BseBI	CCWGG	3 cut(s)	217, 340, 479
BseDI	CCNNGG	3 cut(s)	339, 488, 707
BseGI	GGATG	1 cut(s)	735
BseLI	CCNNNNNNNGG	4 cut(s)	447, 569, 570, 722
BseNI	ACTGG	2 cut(s)	518, 719
BseSI	GKGCMC	2 cut(s)	259, 672
BseYI	CCCAGC	1 cut(s)	672
Bsh1236I	CGCG	2 cut(s)	467, 506
BshFI	GGCC	4 cut(s)	215, 451, 487, 493
BshNI	GGYRCC	5 cut(s)	254, 427, 437, 573, 667
BsiHKCI	CYCGRG	1 cut(s)	203
BslI	CCNNNNNNNGG	4 cut(s)	447, 569, 570, 722
BsnI	GGCC	4 cut(s)	215, 451, 487, 493
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	259, 672
Bsp143I	GATC	1 cut(s)	712
BspACI	CCGC	6 cut(s)	539, 551, 554, 557, 605, 608
BspANI	GGCC	4 cut(s)	215, 451, 487, 493
BspFNI	CGCG	2 cut(s)	467, 506
BspLI	GGNNCC	6 cut(s)	256, 429, 439, 575, 669, 714
BspMAI	CTGCAG	1 cut(s)	365
BspPI	GGATC	2 cut(s)	707, 720
BspT107I	GGYRCC	5 cut(s)	254, 427, 437, 573, 667
BsrI	ACTGG	2 cut(s)	518, 719
BssECI	CCNNGG	3 cut(s)	339, 488, 707
BssMI	GATC	1 cut(s)	712
BssNI	GRCGYC	1 cut(s)	428
BssT1I	CCWWGG	1 cut(s)	707
Bst2UI	CCWGG	3 cut(s)	217, 340, 479
Bst4CI	ACNGT	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	428
BstDEI	CTNAG	2 cut(s)	270, 432
BstEII	GGTNACC	1 cut(s)	623
BstF5I	GGATG	1 cut(s)	735
BstFNI	CGCG	2 cut(s)	467, 506
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	2 cut(s)	430, 469
BstKTI	GATC	1 cut(s)	715
BstMBI	GATC	1 cut(s)	712
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 360, 547, 556
BstNI	CCWGG	3 cut(s)	217, 340, 479
BstNSI	RCATGY	1 cut(s)	54
BstPI	GGTNACC	1 cut(s)	623
BstSCI	CCNGG	3 cut(s)	215, 338, 477
BstSFI	CTRYAG	1 cut(s)	361
BstSLI	GKGCMC	2 cut(s)	259, 672
BstUI	CGCG	2 cut(s)	467, 506
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
Bsu36I	CCTNAGG	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	693
BsuRI	GGCC	4 cut(s)	215, 451, 487, 493
BtgZI	GCGATG	2 cut(s)	402, 765
BtsCI	GGATG	1 cut(s)	735
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	2 cut(s)	19, 370
CaiI	CAGNNNCTG	1 cut(s)	679
CfoI	GCGC	2 cut(s)	430, 469
Cfr13I	GGNCC	1 cut(s)	23
CsiI	ACCWGGT	1 cut(s)	477
Csp6I	GTAC	2 cut(s)	438, 574
CviAII	CATG	3 cut(s)	51, 110, 442
CviJI	RGCY	9 cut(s)	202, 215, 274, 451, 487, 493, 538, 676, 764
CviKI_1	RGCY	9 cut(s)	202, 215, 274, 451, 487, 493, 538, 676, 764
CviQI	GTAC	2 cut(s)	438, 574
DdeI	CTNAG	2 cut(s)	270, 432
DinI	GGCGCC	1 cut(s)	429
DpnI	GATC	1 cut(s)	714
DpnII	GATC	1 cut(s)	712
DraI	TTTAAA	1 cut(s)	73
DraIII	CACNNNGTG	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	707
Eco147I	AGGCCT	1 cut(s)	451
Eco32I	GATATC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	623
EcoO65I	GGTNACC	1 cut(s)	623
EcoRII	CCWGG	3 cut(s)	215, 338, 477
EcoRV	GATATC	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	707
EgeI	GGCGCC	1 cut(s)	429
EheI	GGCGCC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	707
FaeI	CATG	3 cut(s)	54, 113, 445
FatI	CATG	3 cut(s)	50, 109, 441
FauNDI	CATATG	1 cut(s)	568
Fnu4HI	GCNGC	6 cut(s)	539, 551, 554, 557, 605, 608
FokI	GGATG	1 cut(s)	722
Fsp4HI	GCNGC	6 cut(s)	539, 551, 554, 557, 605, 608
FspBI	CTAG	1 cut(s)	765
GlaI	GCGC	2 cut(s)	429, 468
GluI	GCNGC	6 cut(s)	539, 551, 554, 557, 605, 608
GsaI	CCCAGC	1 cut(s)	676
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	4 cut(s)	215, 451, 487, 493
HhaI	GCGC	2 cut(s)	430, 469
Hin1I	GRCGYC	1 cut(s)	428
Hin1II	CATG	3 cut(s)	54, 113, 445
Hin6I	GCGC	2 cut(s)	428, 467
HinP1I	GCGC	2 cut(s)	428, 467
HphI	GGTGA	2 cut(s)	55, 467
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	3 cut(s)	27, 382, 702
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	5 cut(s)	34, 151, 180, 257, 285
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	4 cut(s)	57, 281, 363, 774
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 360, 547, 556
HpyF3I	CTNAG	2 cut(s)	270, 432
Hsp92I	GRCGYC	1 cut(s)	428
Hsp92II	CATG	3 cut(s)	54, 113, 445
HspAI	GCGC	2 cut(s)	428, 467
KasI	GGCGCC	1 cut(s)	427
KpnI	GGTACC	2 cut(s)	441, 577
Kzo9I	GATC	1 cut(s)	712
LweI	GCATC	1 cut(s)	591
MabI	ACCWGGT	1 cut(s)	477
MaeI	CTAG	1 cut(s)	765
MaeIII	GTNAC	4 cut(s)	87, 139, 590, 623
MalI	GATC	1 cut(s)	714
MboI	GATC	1 cut(s)	712
MboII	GAAGA	3 cut(s)	137, 404, 531
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	2 cut(s)	259, 672
MluCI	AATT	3 cut(s)	376, 595, 643
Mly113I	GGCGCC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	7 cut(s)	127, 147, 462, 468, 483, 570, 687
MseI	TTAA	3 cut(s)	72, 182, 746
MslI	CAYNNNNRTG	1 cut(s)	618
MspR9I	CCNGG	3 cut(s)	217, 340, 479
MvaI	CCWGG	3 cut(s)	217, 340, 479
MvnI	CGCG	2 cut(s)	467, 506
MwoI	GCNNNNNNNGC	4 cut(s)	287, 360, 547, 556
NarI	GGCGCC	1 cut(s)	428
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	1 cut(s)	712
NlaIII	CATG	3 cut(s)	54, 113, 445
NlaIV	GGNNCC	6 cut(s)	256, 429, 439, 575, 669, 714
NmeAIII	GCCGAG	1 cut(s)	513
NspI	RCATGY	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	451
PciI	ACATGT	1 cut(s)	50
PkrI	GCNGC	6 cut(s)	540, 552, 555, 558, 606, 609
PluTI	GGCGCC	1 cut(s)	431
PscI	ACATGT	1 cut(s)	50
Psp6I	CCWGG	3 cut(s)	215, 338, 477
PspEI	GGTNACC	1 cut(s)	623
PspFI	CCCAGC	1 cut(s)	672
PspGI	CCWGG	3 cut(s)	215, 338, 477
PspN4I	GGNNCC	6 cut(s)	256, 429, 439, 575, 669, 714
PspPI	GGNCC	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	679
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	2 cut(s)	439, 575
RsaNI	GTAC	2 cut(s)	438, 574
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	72, 182, 746
SatI	GCNGC	6 cut(s)	539, 551, 554, 557, 605, 608
Sau3AI	GATC	1 cut(s)	712
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	3 cut(s)	217, 340, 479
SduI	GDGCHC	2 cut(s)	259, 672
SetI	ASST	6 cut(s)	45, 138, 249, 407, 483, 766
SexAI	ACCWGGT	1 cut(s)	477
SfaNI	GCATC	1 cut(s)	591
SfcI	CTRYAG	1 cut(s)	361
SfoI	GGCGCC	1 cut(s)	429
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	618
Sse9I	AATT	3 cut(s)	376, 595, 643
SseBI	AGGCCT	1 cut(s)	451
SsiI	CCGC	6 cut(s)	539, 551, 554, 557, 605, 608
SspDI	GGCGCC	1 cut(s)	427
SspI	AATATT	1 cut(s)	180
SspMI	CTAG	1 cut(s)	765
StuI	AGGCCT	1 cut(s)	451
StyD4I	CCNGG	3 cut(s)	215, 338, 477
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	1 cut(s)	14
TasI	AATT	3 cut(s)	376, 595, 643
TauI	GCSGC	6 cut(s)	541, 553, 556, 559, 607, 610
Tru1I	TTAA	3 cut(s)	72, 182, 746
Tru9I	TTAA	3 cut(s)	72, 182, 746
TscAI	CASTG	2 cut(s)	19, 370
TspDTI	ATGAA	6 cut(s)	117, 138, 405, 411, 643, 724
TspGWI	ACGGA	1 cut(s)	675
TspRI	CASTG	2 cut(s)	19, 370
VpaK11BI	GGWCC	1 cut(s)	23
XceI	RCATGY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	3 cut(s)	17, 247, 584
XspI	CTAG	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.