Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017604

Physical Location & Seq

Genomic Coordinates Forward (+)

57304578 .. 57305285

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG340800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGCAAGATACTAATGAGAAAGAAGCACATGGTGGCATAAATGAAGAAAAAGAGGTGGTAACATATACCAAGAGGAAGGATACTCGTTGTGCTAAACTATTCAGAAGGCGAATATCAAGGCTCGGGAAAATGGCCGGGTTTCTTGTTTCCTACAAGATCAAGAACCTTCTGGGTGCCCCAAAGATATCTAAGCCTTCTGCAAATCAAGCACCACCATTCAACAGCGTTCCAAATGATTACAAAAAAAAAATCGTTTCCAGGGCAAGAAACTGCCAATACTGCAGTGAGAGTGATAATTCCGATTGCGATGAAGATGAACGCACCTATAATAATGTGCCAAGAAGGGCGCCTAAGGGTACCATGTATAGGCCTCATCCTCCACTCGCGCTTGTTCACCAGGTAAGGCCGAGGCCATATATTTACGCGAACAACTGGGGAAGACCACCACCACCACAGCCGCCCTTATTGCCGCCGCCGCCTCCCCCATATGGGTACCAAAACCCTTATGGTTACAATTTGATGCCGCCGCCACATTTATATGGTTACCAAAATAACCCTTACAATTACAACTTCATCAACGGAATGGTGCCCCAGCCTCTGTATCCTTATTATTATGGTCAGAAACCAAGGGATCCCCCAGTTGGCAACTCATTCATCCATTTTTTAAGCGATGATAACACAGCTAGTAGTTGCAGTCTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

235

Amino Acids

26.92

Weight (kDa)

9.48

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23992
prunus_persica	Prupe.8G245500_v2.0.a1
pyrus_communis	pycom11g25760
rosa_laevigata	RLG00000012094
rosa_multiflora	Rmu_sc0002226.1_g000023
rosa_roxburghii	Rroxscaffold_7G00175810
rosa_rugosa	Rorug06G0221200
rosa_samantha	Rh6AG333800 Rh6BG340800 Rh6CG347000 Rh6DG334200
rosa_wichuraiana	Rw6G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	359, 495
AccB1I	GGYRCC	5 cut(s)	176, 349, 359, 495, 589
AccII	CGCG	2 cut(s)	389, 428
AciI	CCGC	6 cut(s)	461, 473, 476, 479, 527, 530
AclWI	GGATC	2 cut(s)	629, 642
AcoI	YGGCCR	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	350
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	361, 497
AfiI	CCNNNNNNNGG	4 cut(s)	369, 491, 492, 644
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	260, 399
AluBI	AGCT	1 cut(s)	686
AluI	AGCT	1 cut(s)	686
AlwI	GGATC	2 cut(s)	629, 642
AlwNI	CAGNNNCTG	1 cut(s)	601
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	4 cut(s)	135, 371, 407, 413
Asp718I	GGTACC	2 cut(s)	359, 495
AspLEI	GCGC	2 cut(s)	352, 391
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	125
AxyI	CCTNAGG	1 cut(s)	354
BaeGI	GKGCMC	2 cut(s)	181, 594
BamHI	GGATCC	1 cut(s)	634
BanI	GGYRCC	5 cut(s)	176, 349, 359, 495, 589
BbsI	GAAGAC	1 cut(s)	448
BciT130I	CCWGG	2 cut(s)	262, 401
BciVI	GTATCC	2 cut(s)	76, 615
BcnI	CCSGG	1 cut(s)	139
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	283
BfoI	RGCGCY	1 cut(s)	353
BfuI	GTATCC	2 cut(s)	76, 615
BisI	GCNGC	6 cut(s)	461, 473, 476, 479, 527, 530
BlsI	GCNGC	6 cut(s)	462, 474, 477, 480, 528, 531
Bme1390I	CCNGG	3 cut(s)	139, 262, 401
BmeT110I	CYCGRG	1 cut(s)	125
BmiI	GGNNCC	6 cut(s)	178, 351, 361, 497, 591, 636
BmrFI	CCNGG	3 cut(s)	139, 262, 401
BmrI	ACTGGG	2 cut(s)	445, 635
BmsI	GCATC	1 cut(s)	513
BmuI	ACTGGG	2 cut(s)	445, 635
BpiI	GAAGAC	1 cut(s)	448
BpuMI	CCSGG	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	3 cut(s)	261, 410, 629
Bsc4I	CCNNNNNNNGG	4 cut(s)	369, 491, 492, 644
Bse1I	ACTGG	2 cut(s)	440, 641
Bse21I	CCTNAGG	1 cut(s)	354
BseBI	CCWGG	2 cut(s)	262, 401
BseDI	CCNNGG	3 cut(s)	261, 410, 629
BseGI	GGATG	2 cut(s)	376, 657
BseLI	CCNNNNNNNGG	4 cut(s)	369, 491, 492, 644
BseNI	ACTGG	2 cut(s)	440, 641
BseSI	GKGCMC	2 cut(s)	181, 594
BseYI	CCCAGC	1 cut(s)	594
Bsh1236I	CGCG	2 cut(s)	389, 428
BshFI	GGCC	4 cut(s)	137, 373, 409, 415
BshNI	GGYRCC	5 cut(s)	176, 349, 359, 495, 589
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	4 cut(s)	369, 491, 492, 644
BsnI	GGCC	4 cut(s)	137, 373, 409, 415
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	181, 594
Bsp143I	GATC	2 cut(s)	159, 634
BspACI	CCGC	6 cut(s)	461, 473, 476, 479, 527, 530
BspANI	GGCC	4 cut(s)	137, 373, 409, 415
BspFNI	CGCG	2 cut(s)	389, 428
BspLI	GGNNCC	6 cut(s)	178, 351, 361, 497, 591, 636
BspMAI	CTGCAG	1 cut(s)	287
BspPI	GGATC	2 cut(s)	629, 642
BspT107I	GGYRCC	5 cut(s)	176, 349, 359, 495, 589
BsrI	ACTGG	2 cut(s)	440, 641
BssECI	CCNNGG	3 cut(s)	261, 410, 629
BssMI	GATC	2 cut(s)	159, 634
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	629
Bst2UI	CCWGG	2 cut(s)	262, 401
BstACI	GRCGYC	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	192, 354
BstEII	GGTNACC	1 cut(s)	545
BstF5I	GGATG	2 cut(s)	376, 657
BstFNI	CGCG	2 cut(s)	389, 428
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	2 cut(s)	352, 391
BstKTI	GATC	2 cut(s)	162, 637
BstMBI	GATC	2 cut(s)	159, 634
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 282, 469, 478
BstNI	CCWGG	2 cut(s)	262, 401
BstPI	GGTNACC	1 cut(s)	545
BstSCI	CCNGG	3 cut(s)	137, 260, 399
BstSFI	CTRYAG	1 cut(s)	283
BstSLI	GKGCMC	2 cut(s)	181, 594
BstUI	CGCG	2 cut(s)	389, 428
BstV2I	GAAGAC	1 cut(s)	448
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
Bsu36I	CCTNAGG	1 cut(s)	354
BsuI	GTATCC	2 cut(s)	76, 615
BsuRI	GGCC	4 cut(s)	137, 373, 409, 415
BtgZI	GCGATG	2 cut(s)	324, 687
BtsCI	GGATG	2 cut(s)	376, 657
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	292
CaiI	CAGNNNCTG	1 cut(s)	601
CfoI	GCGC	2 cut(s)	352, 391
CsiI	ACCWGGT	1 cut(s)	399
Csp6I	GTAC	2 cut(s)	360, 496
CviAII	CATG	2 cut(s)	32, 364
CviJI	RGCY	9 cut(s)	124, 137, 196, 373, 409, 415, 460, 598, 686
CviKI_1	RGCY	9 cut(s)	124, 137, 196, 373, 409, 415, 460, 598, 686
CviQI	GTAC	2 cut(s)	360, 496
DdeI	CTNAG	2 cut(s)	192, 354
DinI	GGCGCC	1 cut(s)	351
DpnI	GATC	2 cut(s)	161, 636
DpnII	GATC	2 cut(s)	159, 634
DraIII	CACNNNGTG	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	629
Eco147I	AGGCCT	1 cut(s)	373
Eco32I	GATATC	1 cut(s)	189
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	125
Eco91I	GGTNACC	1 cut(s)	545
EcoO65I	GGTNACC	1 cut(s)	545
EcoRII	CCWGG	2 cut(s)	260, 399
EcoRV	GATATC	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	629
EgeI	GGCGCC	1 cut(s)	351
EheI	GGCGCC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	2 cut(s)	35, 367
FatI	CATG	2 cut(s)	31, 363
FauNDI	CATATG	1 cut(s)	490
Fnu4HI	GCNGC	6 cut(s)	461, 473, 476, 479, 527, 530
FokI	GGATG	2 cut(s)	363, 644
Fsp4HI	GCNGC	6 cut(s)	461, 473, 476, 479, 527, 530
FspBI	CTAG	1 cut(s)	687
GlaI	GCGC	2 cut(s)	351, 390
GluI	GCNGC	6 cut(s)	461, 473, 476, 479, 527, 530
GsaI	CCCAGC	1 cut(s)	598
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	4 cut(s)	137, 373, 409, 415
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	2 cut(s)	352, 391
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	2 cut(s)	35, 367
Hin6I	GCGC	2 cut(s)	350, 389
HinP1I	GCGC	2 cut(s)	350, 389
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	3 cut(s)	107, 304, 624
Hpy188III	TCNNGA	2 cut(s)	127, 163
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	5 cut(s)	73, 102, 179, 207, 339
HpyCH4V	TGCA	4 cut(s)	7, 203, 285, 696
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 282, 469, 478
HpyF3I	CTNAG	2 cut(s)	192, 354
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	2 cut(s)	35, 367
HspAI	GCGC	2 cut(s)	350, 389
KasI	GGCGCC	1 cut(s)	349
KpnI	GGTACC	2 cut(s)	363, 499
Kzo9I	GATC	2 cut(s)	159, 634
LpnPI	CCDG	9 cut(s)	151, 158, 247, 274, 386, 413, 421, 608, 654
LweI	GCATC	1 cut(s)	513
MabI	ACCWGGT	1 cut(s)	399
MaeI	CTAG	1 cut(s)	687
MaeIII	GTNAC	3 cut(s)	61, 512, 545
MalI	GATC	2 cut(s)	161, 636
MboI	GATC	2 cut(s)	159, 634
MboII	GAAGA	3 cut(s)	59, 326, 453
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	2 cut(s)	181, 594
MluCI	AATT	3 cut(s)	298, 517, 565
Mly113I	GGCGCC	1 cut(s)	350
MnlI	CCTC	7 cut(s)	49, 69, 384, 390, 405, 492, 609
MseI	TTAA	1 cut(s)	668
MslI	CAYNNNNRTG	1 cut(s)	540
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	3 cut(s)	139, 262, 401
MvaI	CCWGG	2 cut(s)	262, 401
MvnI	CGCG	2 cut(s)	389, 428
MwoI	GCNNNNNNNGC	4 cut(s)	209, 282, 469, 478
NarI	GGCGCC	1 cut(s)	350
NciI	CCSGG	1 cut(s)	139
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	2 cut(s)	159, 634
NlaIII	CATG	2 cut(s)	35, 367
NlaIV	GGNNCC	6 cut(s)	178, 351, 361, 497, 591, 636
NmeAIII	GCCGAG	1 cut(s)	435
PceI	AGGCCT	1 cut(s)	373
PkrI	GCNGC	6 cut(s)	462, 474, 477, 480, 528, 531
PluTI	GGCGCC	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	260, 399
PspEI	GGTNACC	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	594
PspGI	CCWGG	2 cut(s)	260, 399
PspN4I	GGNNCC	6 cut(s)	178, 351, 361, 497, 591, 636
PstI	CTGCAG	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	634
RsaI	GTAC	2 cut(s)	361, 497
RsaNI	GTAC	2 cut(s)	360, 496
RseI	CAYNNNNRTG	1 cut(s)	540
SaqAI	TTAA	1 cut(s)	668
SatI	GCNGC	6 cut(s)	461, 473, 476, 479, 527, 530
Sau3AI	GATC	2 cut(s)	159, 634
ScrFI	CCNGG	3 cut(s)	139, 262, 401
SduI	GDGCHC	2 cut(s)	181, 594
SetI	ASST	5 cut(s)	60, 171, 329, 405, 688
SexAI	ACCWGGT	1 cut(s)	399
SfaNI	GCATC	1 cut(s)	513
SfcI	CTRYAG	1 cut(s)	283
SfoI	GGCGCC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	540
Sse9I	AATT	3 cut(s)	298, 517, 565
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	6 cut(s)	461, 473, 476, 479, 527, 530
SspDI	GGCGCC	1 cut(s)	349
SspMI	CTAG	1 cut(s)	687
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	3 cut(s)	137, 260, 399
StyI	CCWWGG	1 cut(s)	629
TasI	AATT	3 cut(s)	298, 517, 565
TauI	GCSGC	6 cut(s)	463, 475, 478, 481, 529, 532
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TscAI	CASTG	1 cut(s)	292
TspDTI	ATGAA	5 cut(s)	60, 327, 333, 565, 646
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.