Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017604

Physical Location & Seq

Genomic Coordinates Reverse (-)

15209680 .. 15210907

Gene Structure 1228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012094

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGAACCACAGTGCTGATGGTCCGACTTGTGATTTGAAGGTGAATACATGTTGCAAGGAATGCGCCTTTAAAATAAAGGAAAAGTTACAGGAACTAAATGGAGTGAATTCTATCAGTACAATACATGAAGAAAAGGAGATGGTACAAGATACTAATGAGAAAGAAGCACATGGTGGCATAAATGAAGAAAAAGAGGTGGTAACATATACCAAGAAGCACACTCGTTGTGCTAAAATATTCAGAAGGCGAATATCAAGGCTCGGGGAAATGGCCGGGTTTCTTGTTTCCTACAAGATCAAGAGCCTTCTGGGTGCCCCAAAGATATCTAAGCCTTCTGCAAATCAAGCACCACCATTCAACAGCGTTATAAATGATTACAAGAAAAAAATCGTTTCCAGGGTAAGAAACTGCCAATATTGCAGTGAGAGTGATAATTCCGATTGCGATGAAGATGACCGCACCTATAATAATGTGCCAAGAAGGGCGCCTAAGGGTACCATGTATAGGCCTCGTCCTCCACTCGCGCTTGTTCACCAGGTAACGCCGAGGCCATCTATTTACGCGAACAACTGGGGAAGACCACCACCACCACAGCTGCCCTTATTGCCGCCGCCGCCTCCCCCATATGGGTACCAGAACCCTTATGGTTACAATTTGATGCCGCCGCCACATTTATATTGGTATCAAAATAACCCTTACAATTACAACTTCATCAACGGAATGGTGCCTCAGCCTCTGTATCCTTATTATTATGGTCAGAAACCAAGGGATCCCCCAGTTGGCAACTCATTCATCCATTTTTTAAGCGATGATAACACAGCTAGTAGTTGCAGTATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

282

Amino Acids

32.07

Weight (kDa)

8.91

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23992
prunus_persica	Prupe.8G245500_v2.0.a1
pyrus_communis	pycom11g25760
rosa_laevigata	RLG00000012094
rosa_multiflora	Rmu_sc0002226.1_g000023
rosa_roxburghii	Rroxscaffold_7G00175810
rosa_rugosa	Rorug06G0221200
rosa_samantha	Rh6AG333800 Rh6BG340800 Rh6CG347000 Rh6DG334200
rosa_wichuraiana	Rw6G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
Acc65I	GGTACC	2 cut(s)	497, 633
AccB1I	GGYRCC	5 cut(s)	314, 487, 497, 633, 727
AccII	CGCG	2 cut(s)	527, 566
AciI	CCGC	6 cut(s)	460, 611, 614, 617, 665, 668
AclWI	GGATC	2 cut(s)	767, 780
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	488
AdeI	CACNNNGTG	1 cut(s)	176
AfaI	GTAC	4 cut(s)	121, 147, 499, 635
AfiI	CCNNNNNNNGG	4 cut(s)	507, 629, 630, 782
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	40, 361
AjnI	CCWGG	2 cut(s)	398, 537
AluBI	AGCT	2 cut(s)	598, 824
AluI	AGCT	2 cut(s)	598, 824
AlwI	GGATC	2 cut(s)	767, 780
AlwNI	CAGNNNCTG	1 cut(s)	739
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	3 cut(s)	273, 509, 551
ApeKI	GCWGC	1 cut(s)	598
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
Asp718I	GGTACC	2 cut(s)	497, 633
AspLEI	GCGC	3 cut(s)	68, 490, 529
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	55, 527
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	23
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	319
BamHI	GGATCC	1 cut(s)	772
BanI	GGYRCC	5 cut(s)	314, 487, 497, 633, 727
BbsI	GAAGAC	1 cut(s)	586
BbvCI	CCTCAGC	1 cut(s)	732
BbvI	GCAGC	1 cut(s)	585
BccI	CCATC	3 cut(s)	14, 136, 562
BciT130I	CCWGG	2 cut(s)	400, 539
BciVI	GTATCC	1 cut(s)	753
BcnI	CCSGG	1 cut(s)	277
BfaI	CTAG	1 cut(s)	825
BfoI	RGCGCY	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	753
BisI	GCNGC	6 cut(s)	599, 611, 614, 617, 665, 668
BlsI	GCNGC	6 cut(s)	600, 612, 615, 618, 666, 669
Bme1390I	CCNGG	3 cut(s)	277, 400, 539
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	6 cut(s)	316, 489, 499, 635, 729, 774
BmrFI	CCNGG	3 cut(s)	277, 400, 539
BmrI	ACTGGG	2 cut(s)	583, 773
BmsI	GCATC	1 cut(s)	651
BmuI	ACTGGG	2 cut(s)	583, 773
BpiI	GAAGAC	1 cut(s)	586
Bpu10I	CCTNAGC	1 cut(s)	732
BpuMI	CCSGG	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	488
BsaJI	CCNNGG	3 cut(s)	399, 548, 767
Bsc4I	CCNNNNNNNGG	4 cut(s)	507, 629, 630, 782
Bse1I	ACTGG	2 cut(s)	578, 779
Bse21I	CCTNAGG	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	400, 539
BseDI	CCNNGG	3 cut(s)	399, 548, 767
BseGI	GGATG	1 cut(s)	795
BseLI	CCNNNNNNNGG	4 cut(s)	507, 629, 630, 782
BseMII	CTCAG	1 cut(s)	746
BseNI	ACTGG	2 cut(s)	578, 779
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	1 cut(s)	585
Bsh1236I	CGCG	2 cut(s)	527, 566
BshFI	GGCC	3 cut(s)	275, 511, 553
BshNI	GGYRCC	5 cut(s)	314, 487, 497, 633, 727
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	4 cut(s)	507, 629, 630, 782
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	275, 511, 553
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	297, 772
BspACI	CCGC	6 cut(s)	460, 611, 614, 617, 665, 668
BspANI	GGCC	3 cut(s)	275, 511, 553
BspCNI	CTCAG	1 cut(s)	745
BspFNI	CGCG	2 cut(s)	527, 566
BspLI	GGNNCC	6 cut(s)	316, 489, 499, 635, 729, 774
BspPI	GGATC	2 cut(s)	767, 780
BspT107I	GGYRCC	5 cut(s)	314, 487, 497, 633, 727
BsrI	ACTGG	2 cut(s)	578, 779
BssECI	CCNNGG	3 cut(s)	399, 548, 767
BssMI	GATC	2 cut(s)	297, 772
BssNI	GRCGYC	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	767
Bst2UI	CCWGG	2 cut(s)	400, 539
Bst4CI	ACNGT	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	63
BstDEI	CTNAG	3 cut(s)	330, 492, 732
BstF5I	GGATG	1 cut(s)	795
BstFNI	CGCG	2 cut(s)	527, 566
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	3 cut(s)	68, 490, 529
BstKTI	GATC	2 cut(s)	300, 775
BstMBI	GATC	2 cut(s)	297, 772
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 347, 420, 607, 616
BstNI	CCWGG	2 cut(s)	400, 539
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	3 cut(s)	275, 398, 537
BstSLI	GKGCMC	1 cut(s)	319
BstUI	CGCG	2 cut(s)	527, 566
BstV1I	GCAGC	1 cut(s)	585
BstV2I	GAAGAC	1 cut(s)	586
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
Bsu36I	CCTNAGG	1 cut(s)	492
BsuI	GTATCC	1 cut(s)	753
BsuRI	GGCC	3 cut(s)	275, 511, 553
BtgZI	GCGATG	2 cut(s)	462, 825
BtsCI	GGATG	1 cut(s)	795
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	2 cut(s)	19, 430
CaiI	CAGNNNCTG	1 cut(s)	739
CfoI	GCGC	3 cut(s)	68, 490, 529
Cfr13I	GGNCC	1 cut(s)	23
CsiI	ACCWGGT	1 cut(s)	537
Csp6I	GTAC	4 cut(s)	120, 146, 498, 634
CviAII	CATG	4 cut(s)	51, 128, 173, 502
CviJI	RGCY	9 cut(s)	262, 275, 306, 334, 511, 553, 598, 736, 824
CviKI_1	RGCY	9 cut(s)	262, 275, 306, 334, 511, 553, 598, 736, 824
CviQI	GTAC	4 cut(s)	120, 146, 498, 634
DdeI	CTNAG	3 cut(s)	330, 492, 732
DinI	GGCGCC	1 cut(s)	489
DpnI	GATC	2 cut(s)	299, 774
DpnII	GATC	2 cut(s)	297, 772
DraI	TTTAAA	1 cut(s)	73
DraIII	CACNNNGTG	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	767
Eco147I	AGGCCT	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	398, 537
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	767
EgeI	GGCGCC	1 cut(s)	489
EheI	GGCGCC	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	767
FaeI	CATG	4 cut(s)	54, 131, 176, 505
FatI	CATG	4 cut(s)	50, 127, 172, 501
FauNDI	CATATG	1 cut(s)	628
Fnu4HI	GCNGC	6 cut(s)	599, 611, 614, 617, 665, 668
FokI	GGATG	1 cut(s)	782
Fsp4HI	GCNGC	6 cut(s)	599, 611, 614, 617, 665, 668
FspBI	CTAG	1 cut(s)	825
GlaI	GCGC	3 cut(s)	67, 489, 528
GluI	GCNGC	6 cut(s)	599, 611, 614, 617, 665, 668
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	3 cut(s)	275, 511, 553
HapII	CCGG	1 cut(s)	276
HhaI	GCGC	3 cut(s)	68, 490, 529
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	4 cut(s)	54, 131, 176, 505
Hin6I	GCGC	3 cut(s)	66, 488, 527
HinP1I	GCGC	3 cut(s)	66, 488, 527
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	55, 527
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	4 cut(s)	27, 245, 442, 762
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	5 cut(s)	34, 240, 317, 345, 477
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	4 cut(s)	57, 341, 423, 834
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 347, 420, 607, 616
HpyF3I	CTNAG	3 cut(s)	330, 492, 732
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	4 cut(s)	54, 131, 176, 505
HspAI	GCGC	3 cut(s)	66, 488, 527
KasI	GGCGCC	1 cut(s)	487
KpnI	GGTACC	2 cut(s)	501, 637
Kzo9I	GATC	2 cut(s)	297, 772
Lsp1109I	GCAGC	1 cut(s)	585
LweI	GCATC	1 cut(s)	651
MabI	ACCWGGT	1 cut(s)	537
MaeI	CTAG	1 cut(s)	825
MaeIII	GTNAC	4 cut(s)	87, 202, 541, 650
MalI	GATC	2 cut(s)	299, 774
MboI	GATC	2 cut(s)	297, 772
MboII	GAAGA	4 cut(s)	143, 200, 464, 591
MflI	RGATCY	1 cut(s)	772
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	4 cut(s)	109, 436, 655, 703
Mly113I	GGCGCC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	7 cut(s)	190, 522, 528, 543, 630, 741, 747
MseI	TTAA	2 cut(s)	72, 806
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	3 cut(s)	277, 400, 539
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	2 cut(s)	400, 539
MvnI	CGCG	2 cut(s)	527, 566
MwoI	GCNNNNNNNGC	5 cut(s)	63, 347, 420, 607, 616
NarI	GGCGCC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	277
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	2 cut(s)	297, 772
NlaIII	CATG	4 cut(s)	54, 131, 176, 505
NlaIV	GGNNCC	6 cut(s)	316, 489, 499, 635, 729, 774
NmeAIII	GCCGAG	1 cut(s)	573
NspI	RCATGY	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	511
PciI	ACATGT	1 cut(s)	50
PctI	GAATGC	1 cut(s)	68
PkrI	GCNGC	6 cut(s)	600, 612, 615, 618, 666, 669
PluTI	GGCGCC	1 cut(s)	491
PscI	ACATGT	1 cut(s)	50
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	398, 537
PspGI	CCWGG	2 cut(s)	398, 537
PspN4I	GGNNCC	6 cut(s)	316, 489, 499, 635, 729, 774
PspPI	GGNCC	1 cut(s)	23
PstNI	CAGNNNCTG	1 cut(s)	739
PsuI	RGATCY	1 cut(s)	772
PvuII	CAGCTG	1 cut(s)	598
RsaI	GTAC	4 cut(s)	121, 147, 499, 635
RsaNI	GTAC	4 cut(s)	120, 146, 498, 634
SaqAI	TTAA	2 cut(s)	72, 806
SatI	GCNGC	6 cut(s)	599, 611, 614, 617, 665, 668
Sau3AI	GATC	2 cut(s)	297, 772
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	3 cut(s)	277, 400, 539
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	6 cut(s)	45, 201, 467, 543, 600, 826
SexAI	ACCWGGT	1 cut(s)	537
SfaNI	GCATC	1 cut(s)	651
SfoI	GGCGCC	1 cut(s)	489
SinI	GGWCC	1 cut(s)	23
Sse9I	AATT	4 cut(s)	109, 436, 655, 703
SseBI	AGGCCT	1 cut(s)	511
SsiI	CCGC	6 cut(s)	460, 611, 614, 617, 665, 668
SspDI	GGCGCC	1 cut(s)	487
SspI	AATATT	2 cut(s)	240, 419
SspMI	CTAG	1 cut(s)	825
StuI	AGGCCT	1 cut(s)	511
StyD4I	CCNGG	3 cut(s)	275, 398, 537
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	1 cut(s)	14
TasI	AATT	4 cut(s)	109, 436, 655, 703
TatI	WGTACW	1 cut(s)	119
TauI	GCSGC	5 cut(s)	613, 616, 619, 667, 670
Tru1I	TTAA	2 cut(s)	72, 806
Tru9I	TTAA	2 cut(s)	72, 806
TscAI	CASTG	2 cut(s)	19, 430
TseI	GCWGC	1 cut(s)	598
TspDTI	ATGAA	5 cut(s)	144, 201, 465, 703, 784
TspGWI	ACGGA	1 cut(s)	735
TspRI	CASTG	2 cut(s)	19, 430
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	1 cut(s)	109
XceI	RCATGY	1 cut(s)	54
XcmI	CCANNNNNNNNNTGG	3 cut(s)	17, 644, 678
XspI	CTAG	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.