Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0017604

Physical Location & Seq

Genomic Coordinates Forward (+)

28474928 .. 28475233

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g25760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGATGCATGGGAGGCCACCGCCAGGTCCACCACCGGTATTGCAATTGCCGCCGCCAATGCAACCACATGGGTACGGTTATGATTATCGCTCGAATATGGTTCTGATGCCACGTCCGCCGCCGCCAATGCAACCACAAGAGTACGGTTATGATTATCGCTCGAATATGTTTCCGATGCCACGTCCGCCGCCGCCCCCGCCACATATGTATCCTTATTATCATCGGCCAAAGGATCCCCCGGTTGGTAACTCCATGATCCATTATTTCAGCGACGATAACACTAGCAGTGCTTGCACGATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

102

Amino Acids

11.64

Weight (kDa)

7.92

Isoelectric Point (pI)

95.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23992
prunus_persica	Prupe.8G245500_v2.0.a1
pyrus_communis	pycom11g25760
rosa_laevigata	RLG00000012094
rosa_multiflora	Rmu_sc0002226.1_g000023
rosa_roxburghii	Rroxscaffold_7G00175810
rosa_rugosa	Rorug06G0221200
rosa_samantha	Rh6AG333800 Rh6BG340800 Rh6CG347000 Rh6DG334200
rosa_wichuraiana	Rw6G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	227, 240, 250
AcoI	YGGCCR	1 cut(s)	224
AfaI	GTAC	2 cut(s)	74, 143
AfiI	CCNNNNNNNGG	2 cut(s)	23, 242
AgeI	ACCGGT	1 cut(s)	34
AjiI	CACGTC	2 cut(s)	113, 182
AjnI	CCWGG	1 cut(s)	22
AlwI	GGATC	3 cut(s)	227, 240, 250
AoxI	GGCC	2 cut(s)	14, 224
AsiGI	ACCGGT	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	26
BaeI	ACNNNNGTAYC	2 cut(s)	191, 224
BamHI	GGATCC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	239
BfaI	CTAG	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	219
BisI	GCNGC	6 cut(s)	50, 53, 119, 122, 188, 191
BlsI	GCNGC	6 cut(s)	51, 54, 120, 123, 189, 192
Bme1390I	CCNGG	2 cut(s)	24, 239
Bme18I	GGWCC	1 cut(s)	26
BmgBI	CACGTC	2 cut(s)	113, 182
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	24, 239
BmsI	GCATC	2 cut(s)	96, 165
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 242
Bse118I	RCCGGY	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	23, 242
BshFI	GGCC	2 cut(s)	16, 226
BshTI	ACCGGT	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	35, 239
BslI	CCNNNNNNNGG	2 cut(s)	23, 242
BsnI	GGCC	2 cut(s)	16, 226
Bsp143I	GATC	2 cut(s)	232, 255
BspANI	GGCC	2 cut(s)	16, 226
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	3 cut(s)	227, 240, 250
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	2 cut(s)	232, 255
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	77, 146
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	292
BstKTI	GATC	2 cut(s)	235, 258
BstMBI	GATC	2 cut(s)	232, 255
BstMWI	GCNNNNNNNGC	8 cut(s)	13, 49, 58, 115, 127, 184, 196, 291
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	2 cut(s)	22, 237
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	16, 226
BtrI	CACGTC	2 cut(s)	113, 182
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	73, 142
CspAI	ACCGGT	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	3 cut(s)	8, 68, 253
CviJI	RGCY	2 cut(s)	16, 226
CviKI_1	RGCY	2 cut(s)	16, 226
CviQI	GTAC	2 cut(s)	73, 142
DpnI	GATC	2 cut(s)	234, 257
DpnII	GATC	2 cut(s)	232, 255
EaeI	YGGCCR	1 cut(s)	224
EciI	GGCGGA	2 cut(s)	105, 174
Eco47I	GGWCC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	9
FaeI	CATG	3 cut(s)	11, 71, 256
FaiI	YATR	9 cut(s)	9, 69, 81, 98, 150, 167, 204, 206, 254
FatI	CATG	3 cut(s)	7, 67, 252
FauI	CCCGC	1 cut(s)	204
FauNDI	CATATG	1 cut(s)	204
Fnu4HI	GCNGC	6 cut(s)	50, 53, 119, 122, 188, 191
Fsp4HI	GCNGC	6 cut(s)	50, 53, 119, 122, 188, 191
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	6 cut(s)	50, 53, 119, 122, 188, 191
HaeIII	GGCC	2 cut(s)	16, 226
HapII	CCGG	2 cut(s)	35, 239
Hin1II	CATG	3 cut(s)	11, 71, 256
HpaII	CCGG	2 cut(s)	35, 239
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	2 cut(s)	105, 174
Hpy8I	GTNNAC	1 cut(s)	29
Hpy99I	CGWCG	1 cut(s)	275
HpyCH4III	ACNGT	2 cut(s)	77, 146
HpyCH4IV	ACGT	2 cut(s)	112, 181
HpyCH4V	TGCA	5 cut(s)	7, 43, 61, 130, 294
HpyF10VI	GCNNNNNNNGC	8 cut(s)	13, 49, 58, 115, 127, 184, 196, 291
HpySE526I	ACGT	2 cut(s)	112, 181
Hsp92II	CATG	3 cut(s)	11, 71, 256
Kzo9I	GATC	2 cut(s)	232, 255
LpnPI	CCDG	4 cut(s)	9, 36, 48, 252
LweI	GCATC	2 cut(s)	96, 165
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	2 cut(s)	112, 181
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	2 cut(s)	234, 257
MboI	GATC	2 cut(s)	232, 255
MfeI	CAATTG	1 cut(s)	44
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	1 cut(s)	6
Mph1103I	ATGCAT	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	299
MspI	CCGG	2 cut(s)	35, 239
MspR9I	CCNGG	2 cut(s)	24, 239
MunI	CAATTG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	8 cut(s)	13, 49, 58, 115, 127, 184, 196, 291
NciI	CCSGG	1 cut(s)	239
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	2 cut(s)	232, 255
NlaIII	CATG	3 cut(s)	11, 71, 256
NlaIV	GGNNCC	1 cut(s)	234
NsiI	ATGCAT	1 cut(s)	9
PinAI	ACCGGT	1 cut(s)	34
PkrI	GCNGC	6 cut(s)	51, 54, 120, 123, 189, 192
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	74, 143
RsaNI	GTAC	2 cut(s)	73, 142
RseI	CAYNNNNRTG	1 cut(s)	299
SatI	GCNGC	6 cut(s)	50, 53, 119, 122, 188, 191
Sau3AI	GATC	2 cut(s)	232, 255
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	24, 239
SetI	ASST	3 cut(s)	28, 115, 184
SfaNI	GCATC	2 cut(s)	96, 165
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	1 cut(s)	44
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	22, 237
TaaI	ACNGT	2 cut(s)	77, 146
TaiI	ACGT	2 cut(s)	115, 184
TaqI	TCGA	2 cut(s)	92, 161
TasI	AATT	1 cut(s)	44
TauI	GCSGC	6 cut(s)	52, 55, 121, 124, 190, 193
TscAI	CASTG	1 cut(s)	292
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	26
XspI	CTAG	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.