FvH4_2g28330

Neurochondrin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010867
Physical Location & Seq
Forward (+)
22272707 .. 22278486
5780 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28330.t1

Sequence Viewer

Length: 1875 bp
ATGGACCAATCGTCGCCGGCGCTCGATGACTGCTTGAAGCTACTGAAAGGCGAAAGAGACGAGCAGCGCCTCGCTGGACTTCTCCTCGTCACCAAATTCTGCAAAGGCGACGACCTCTCCTCCCTCCTCACTATCTATCACGCCGTCGGCGTCCAGTTTCTCGACCGGCTCCTCCGAACCGGAATGGGGAAGGGAAGCATAAGTGAAAACCGCGAGGCGTATTTGCAGCTTTCGGTTACTGTTCTTGCTGCATTCTGCCGTGTTCCTGAGATTGCTGCCTCCAGTGAGATGATTTCGAAGATTCCGCTAGTGCTGGAAGTTCTATCCAAAGAGTCTGGCCCAGCTGTTATCGAGGAATGTTATGAGTTTCTATATTTGGTTTCGACTGCTGCTGAAGATGGAATGATGACATTTTACTCATCTGGGGGCATGAAAATGCTGGCTTCTCATATGCCCATTTTACCTGATGGTTCAGATCAGATGAAAATCACTATGAAACTTGTGCAATTGCTACTGCAAAAGTTCTATCCTGACCGCATTAACAATGAATATCTACCAGAGCTGTCAATAATTGTGGCTGCAATAGCAAGGCAATTTTCTGTCTTACATGATGCTATGAAATTTGATGCGCTGCACATACTGACTGCCATCCTCTCTCCAAACCTTTCGGCACCGCTTTATGATTCTCTTCGTGTACTCCCTGAAAAAAATTGGCCCAATTATATGCGTGATGGAATAGCTGCCATTCTACAAAACCGTGTTGCACCCACTGAAAAGTTTCAGGCACTTATTTTGGCCAAGTCTATGTTGACAATATTCGGGGCAAAGTGGCTGGTAGGTCAGATAAATTCAGCTGATGGAAAAGAGCCTATTCCAACAGATAGGTGCTTAGTGCTAGTGCTGGAGCAATCAAGGGTTGAAGTTGCTGTTCTTCTAAATGAGCTAGCATACTTAAAAGATGAAGCATCTAAGAAATCCTCACCCACTGCTGAGACAATCCTTCTAAAGAAACGGAATGTAACTATTGCCTTTTCCTTGCTGGAAAAGATAGTTACCTTTATATCAGATGCCAGTGAGAATGAAGGGAACCTTATCAACGAAAATACCTACTCACTGGTCATTAATGGCCTTAATGAGACAATTGGTGTAGTTCTAGAGTATTTACAAGATGCAAAGGAACATGAGCAAAGGAAGGGAGATGATCTTCTTGCTTCAGTGCGTGTTATCGGCAGCTATCTTGCAGAGGCACCTCTTGCATGCAGTGAGAAGGTTAAAGAACTTTTAGGGTACATGCTTTCGATTGAAGGTGAAGATGAACCAAGGCCCTTCTTTGCCATATGCTTTTTGCTTCCGATGCTGTGTCAAATGACAATGGAGATTGAAGGATGTAAAGCATTGATTTCTTGTGGAGGTCATAAGTCTGTTGTTGATTTCCTTGTAAATTTGATTGGGCTGCATAGTTTCAGAGTGGATGATAAGGGCTGCATCTTTTTGGCATGCGATACAATCTTGAATCTTCTTCTAAAGAAAGATCAAGTGCAAGCCCCATTGGATTATTCGACTCTCGTCAATCTGTTGAAAGCGTTGGCACAGTGGACAGATGGTGTAGATGACCCGTCAATCATAATGATGGCTTCAAGTATTTGCACACTGCTGTTTGATCTTACTTCAGAGAAGGCTCTTCTTAAGCATCCCAACTTTGATGACAGCTGTCTGAATAGCCTGTCTCGGCTCATTGCAAGAAGCATGGCTTCATGGGGACAGGATATGTCTGATGCTGCTGAAGAAGAAACGGATCTTCTTGAGATTATTACGGAAGGATATTCTCGATGGGTCACTCGCTTCCCTCGTGTGAGAGATGCTGTTGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neurochondrin

Protein Analysis

625

Amino Acids

69.19

Weight (kDa)

4.9

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neurochondrin PF05536 4 - 571 2.3e-128 Neurochondrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 670, 1246
AccII CGCG 1 cut(s) 213
AciI CCGC 4 cut(s) 211, 305, 535, 674
AclWI GGATC 1 cut(s) 1803
AcoI YGGCCR 1 cut(s) 795
AcsI RAATTY 4 cut(s) 95, 620, 847, 1441
AcuI CTGAAG 4 cut(s) 414, 1197, 1653, 1803
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 696, 1289
AfiI CCNNNNNNNGG 1 cut(s) 186
AflII CTTAAG 1 cut(s) 1685
AgsI TTSAA 7 cut(s) 37, 920, 1304, 1382, 1513, 1579, 1638
AhdI GACNNNNNGTC 1 cut(s) 10
AluBI AGCT 9 cut(s) 40, 229, 344, 562, 740, 854, 943, 1233, 1710
AluI AGCT 9 cut(s) 40, 229, 344, 562, 740, 854, 943, 1233, 1710
Alw26I GTCTC 4 cut(s) 51, 986, 1130, 1731
AlwI GGATC 1 cut(s) 1803
AoxI GGCC 5 cut(s) 337, 713, 795, 1126, 1322
ApoI RAATTY 4 cut(s) 95, 620, 847, 1441
AseI ATTAAT 1 cut(s) 1122
Asp700I GAANNNNTTC 1 cut(s) 777
AspLEI GCGC 3 cut(s) 22, 69, 631
AspS9I GGNCC 4 cut(s) 4, 338, 714, 1323
AsuHPI GGTGA 3 cut(s) 82, 972, 1319
AsuII TTCGAA 1 cut(s) 296
AsuNHI GCTAGC 1 cut(s) 943
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 797
BanI GGYRCC 2 cut(s) 670, 1246
BauI CACGAG 1 cut(s) 1848
BccI CCATC 8 cut(s) 392, 461, 656, 725, 851, 1595, 1624, 1824
BceAI ACGGC 2 cut(s) 128, 243
BcoDI GTCTC 4 cut(s) 51, 986, 1130, 1731
BfaI CTAG 4 cut(s) 308, 896, 944, 1154
BfoI RGCGCY 2 cut(s) 23, 70
BfrI CTTAAG 1 cut(s) 1685
Bme18I GGWCC 1 cut(s) 4
BmeRI GACNNNNNGTC 1 cut(s) 10
BmgT120I GGNCC 4 cut(s) 4, 338, 714, 1323
BmiI GGNNCC 4 cut(s) 170, 672, 1088, 1248
BmtI GCTAGC 1 cut(s) 947
BoxI GACNNNNGTC 2 cut(s) 1565, 1710
BpmI CTGGAG 2 cut(s) 265, 923
Bpu14I TTCGAA 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 1823
BsaBI GATNNNNATC 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 1319
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 4 cut(s) 101, 104, 131, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse118I RCCGGY 2 cut(s) 16, 165
Bse1I ACTGG 4 cut(s) 154, 282, 1071, 1119
Bse3DI GCAATG 1 cut(s) 1734
Bse8I GATNNNNATC 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 1319
BseGI GGATG 4 cut(s) 648, 1391, 1477, 1690
BseJI GATNNNNATC 1 cut(s) 485
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMI GCAATG 1 cut(s) 1734
BseMII CTCAG 2 cut(s) 258, 981
BseNI ACTGG 4 cut(s) 154, 282, 1071, 1119
BseRI GAGGAG 4 cut(s) 74, 109, 116, 161
BseYI CCCAGC 1 cut(s) 340
BsgI GTGCAG 1 cut(s) 617
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 5 cut(s) 339, 715, 797, 1128, 1324
BshNI GGYRCC 2 cut(s) 670, 1246
BsiEI CGRYCG 1 cut(s) 166
BsiSI CCGG 3 cut(s) 17, 166, 180
BslFI GGGAC 1 cut(s) 1773
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 4 cut(s) 51, 986, 1130, 1731
BsmBI CGTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 1773
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 5 cut(s) 339, 715, 797, 1128, 1324
Bsp119I TTCGAA 1 cut(s) 296
Bsp143I GATC 5 cut(s) 475, 1201, 1531, 1660, 1795
BspACI CCGC 4 cut(s) 211, 305, 535, 674
BspANI GGCC 5 cut(s) 339, 715, 797, 1128, 1324
BspCNI CTCAG 2 cut(s) 259, 982
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 4 cut(s) 170, 672, 1088, 1248
BspOI GCTAGC 1 cut(s) 947
BspPI GGATC 1 cut(s) 1803
BspQI GCTCTTC 1 cut(s) 1686
BspT104I TTCGAA 1 cut(s) 296
BspT107I GGYRCC 2 cut(s) 670, 1246
BspTI CTTAAG 1 cut(s) 1685
BsrDI GCAATG 1 cut(s) 1734
BsrFI RCCGGY 2 cut(s) 16, 165
BsrI ACTGG 4 cut(s) 154, 282, 1071, 1119
BssAI RCCGGY 2 cut(s) 16, 165
BssECI CCNNGG 1 cut(s) 1319
BssMI GATC 5 cut(s) 475, 1201, 1531, 1660, 1795
BssNI GRCGYC 1 cut(s) 150
BssSI CACGAG 1 cut(s) 1848
BssT1I CCWWGG 1 cut(s) 1319
Bst2BI CACGAG 1 cut(s) 1848
Bst4CI ACNGT 3 cut(s) 241, 758, 1593
Bst6I CTCTTC 2 cut(s) 693, 1686
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 1685
BstAPI GCANNNNNTGC 1 cut(s) 1253
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 6 cut(s) 18, 441, 945, 1258, 1498, 1542
BstDEI CTNAG 4 cut(s) 267, 889, 969, 990
BstF5I GGATG 4 cut(s) 648, 1391, 1477, 1690
BstFNI CGCG 1 cut(s) 213
BstH2I RGCGCY 2 cut(s) 23, 70
BstHHI GCGC 3 cut(s) 22, 69, 631
BstKTI GATC 5 cut(s) 478, 1204, 1534, 1663, 1798
BstMAI GTCTC 4 cut(s) 51, 986, 1130, 1731
BstMBI GATC 5 cut(s) 475, 1201, 1531, 1660, 1795
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 3 cut(s) 584, 1253, 1354
BstNSI RCATGY 3 cut(s) 1260, 1294, 1500
BstPAI GACNNNNGTC 2 cut(s) 1565, 1710
BstUI CGCG 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 1795
BstYI RGATCY 1 cut(s) 1795
BsuRI GGCC 5 cut(s) 339, 715, 797, 1128, 1324
BtsCI GGATG 4 cut(s) 648, 1391, 1477, 1690
BtsI GCAGTG 3 cut(s) 984, 1267, 1649
BtsIMutI CAGTG 9 cut(s) 289, 768, 984, 1078, 1112, 1221, 1267, 1598, 1649
Cac8I GCNNGC 6 cut(s) 18, 441, 945, 1258, 1498, 1542
CfoI GCGC 3 cut(s) 22, 69, 631
Cfr10I RCCGGY 2 cut(s) 16, 165
Cfr13I GGNCC 4 cut(s) 4, 338, 714, 1323
CseI GACGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 695, 1288
CspCI CAANNNNNGTGG 2 cut(s) 555, 590
CviAII CATG 8 cut(s) 430, 608, 1181, 1257, 1291, 1497, 1747, 1755
CviQI GTAC 2 cut(s) 695, 1288
DdeI CTNAG 4 cut(s) 267, 889, 969, 990
DpnI GATC 5 cut(s) 477, 1203, 1533, 1662, 1797
DpnII GATC 5 cut(s) 475, 1201, 1531, 1660, 1795
DriI GACNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 795
Eam1104I CTCTTC 2 cut(s) 693, 1686
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 2 cut(s) 693, 1686
Eco130I CCWWGG 1 cut(s) 1319
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 4 cut(s) 414, 1197, 1653, 1803
EcoO109I RGGNCCY 1 cut(s) 1323
EcoT14I CCWWGG 1 cut(s) 1319
ErhI CCWWGG 1 cut(s) 1319
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 8 cut(s) 433, 611, 1184, 1260, 1294, 1500, 1750, 1758
FalI AAGNNNNNCTT 4 cut(s) 1074, 1106, 1735, 1767
FaqI GGGAC 1 cut(s) 1773
FatI CATG 8 cut(s) 429, 607, 1180, 1256, 1290, 1496, 1746, 1754
FauNDI CATATG 2 cut(s) 450, 1337
FokI GGATG 4 cut(s) 635, 1398, 1484, 1677
FspBI CTAG 4 cut(s) 308, 896, 944, 1154
GlaI GCGC 3 cut(s) 21, 68, 630
GsaI CCCAGC 1 cut(s) 344
GsuI CTGGAG 2 cut(s) 265, 923
HaeII RGCGCY 2 cut(s) 23, 70
HaeIII GGCC 5 cut(s) 339, 715, 797, 1128, 1324
HapII CCGG 3 cut(s) 17, 166, 180
HgaI GACGC 1 cut(s) 139
HhaI GCGC 3 cut(s) 22, 69, 631
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 8 cut(s) 433, 611, 1184, 1260, 1294, 1500, 1750, 1758
Hin6I GCGC 3 cut(s) 20, 67, 629
HinP1I GCGC 3 cut(s) 20, 67, 629
HincII GTYRAC 1 cut(s) 810
HindII GTYRAC 1 cut(s) 810
HinfI GANTC 5 cut(s) 301, 332, 683, 1513, 1561
HpaII CCGG 3 cut(s) 17, 166, 180
HphI GGTGA 3 cut(s) 82, 972, 1319
Hpy166II GTNNAC 3 cut(s) 695, 810, 1596
Hpy188III TCNNGA 7 cut(s) 161, 266, 530, 1154, 1510, 1802, 1827
Hpy8I GTNNAC 3 cut(s) 695, 810, 1596
Hpy99I CGWCG 3 cut(s) 16, 113, 149
HpyCH4III ACNGT 3 cut(s) 241, 758, 1593
HpyF10VI GCNNNNNNNGC 3 cut(s) 584, 1253, 1354
HpyF3I CTNAG 4 cut(s) 267, 889, 969, 990
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 8 cut(s) 433, 611, 1184, 1260, 1294, 1500, 1750, 1758
HspAI GCGC 3 cut(s) 20, 67, 629
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Kzo9I GATC 5 cut(s) 475, 1201, 1531, 1660, 1795
LguI GCTCTTC 1 cut(s) 1686
LmnI GCTCC 2 cut(s) 174, 904
MaeI CTAG 4 cut(s) 308, 896, 944, 1154
MaeIII GTNAC 5 cut(s) 88, 235, 1018, 1051, 1834
MalI GATC 5 cut(s) 477, 1203, 1533, 1662, 1797
MboI GATC 5 cut(s) 475, 1201, 1531, 1660, 1795
MfeI CAATTG 2 cut(s) 506, 1140
MflI RGATCY 1 cut(s) 1795
MlsI TGGCCA 1 cut(s) 797
MluNI TGGCCA 1 cut(s) 797
MlyI GAGTC 2 cut(s) 341, 1555
MmeI TCCRAC 1 cut(s) 899
Mox20I TGGCCA 1 cut(s) 797
MreI CGCCGGCG 1 cut(s) 16
MroNI GCCGGC 1 cut(s) 16
MroXI GAANNNNTTC 1 cut(s) 777
MscI TGGCCA 1 cut(s) 797
MseI TTAA 6 cut(s) 540, 953, 1122, 1131, 1272, 1686
MslI CAYNNNNRTG 2 cut(s) 434, 1628
Msp20I TGGCCA 1 cut(s) 797
MspA1I CMGCKG 3 cut(s) 344, 854, 1710
MspCI CTTAAG 1 cut(s) 1685
MspI CCGG 3 cut(s) 17, 166, 180
MunI CAATTG 2 cut(s) 506, 1140
Mva1269I GAATGC 1 cut(s) 251
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 3 cut(s) 584, 1253, 1354
NaeI GCCGGC 1 cut(s) 18
NdeI CATATG 2 cut(s) 450, 1337
NdeII GATC 5 cut(s) 475, 1201, 1531, 1660, 1795
NgoMIV GCCGGC 1 cut(s) 16
NheI GCTAGC 1 cut(s) 943
NlaIII CATG 8 cut(s) 433, 611, 1184, 1260, 1294, 1500, 1750, 1758
NlaIV GGNNCC 4 cut(s) 170, 672, 1088, 1248
NmeAIII GCCGAG 1 cut(s) 1708
NmuCI GTSAC 2 cut(s) 88, 1834
NspI RCATGY 3 cut(s) 1260, 1294, 1500
NspV TTCGAA 1 cut(s) 296
PaeI GCATGC 2 cut(s) 1260, 1500
PciSI GCTCTTC 1 cut(s) 1686
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 1846
PctI GAATGC 1 cut(s) 251
PdiI GCCGGC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 3 cut(s) 301, 683, 1513
PleI GAGTC 2 cut(s) 340, 1555
PpsI GAGTC 2 cut(s) 340, 1555
PshAI GACNNNNGTC 2 cut(s) 1565, 1710
PshBI ATTAAT 1 cut(s) 1122
PspFI CCCAGC 1 cut(s) 340
PspN4I GGNNCC 4 cut(s) 170, 672, 1088, 1248
PspPI GGNCC 4 cut(s) 4, 338, 714, 1323
PsuI RGATCY 1 cut(s) 1795
PvuII CAGCTG 3 cut(s) 344, 854, 1710
RsaI GTAC 2 cut(s) 696, 1289
RsaNI GTAC 2 cut(s) 695, 1288
RseI CAYNNNNRTG 2 cut(s) 434, 1628
SapI GCTCTTC 1 cut(s) 1686
SaqAI TTAA 6 cut(s) 540, 953, 1122, 1131, 1272, 1686
Sau3AI GATC 5 cut(s) 475, 1201, 1531, 1660, 1795
Sau96I GGNCC 4 cut(s) 4, 338, 714, 1323
SchI GAGTC 2 cut(s) 341, 1555
SfuI TTCGAA 1 cut(s) 296
SgrAI CRCCGGYG 1 cut(s) 16
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 434, 1628
SmlI CTYRAG 2 cut(s) 1685, 1802
SmoI CTYRAG 2 cut(s) 1685, 1802
SphI GCATGC 2 cut(s) 1260, 1500
SsiI CCGC 4 cut(s) 211, 305, 535, 674
SspI AATATT 1 cut(s) 816
SspMI CTAG 4 cut(s) 308, 896, 944, 1154
StyI CCWWGG 1 cut(s) 1319
TaaI ACNGT 3 cut(s) 241, 758, 1593
TaqI TCGA 8 cut(s) 24, 162, 296, 351, 383, 1298, 1559, 1828
TatI WGTACW 1 cut(s) 694
TfiI GAWTC 3 cut(s) 301, 683, 1513
Tru1I TTAA 6 cut(s) 540, 953, 1122, 1131, 1272, 1686
Tru9I TTAA 6 cut(s) 540, 953, 1122, 1131, 1272, 1686
TscAI CASTG 9 cut(s) 289, 775, 991, 1078, 1119, 1221, 1267, 1598, 1656
TseFI GTSAC 2 cut(s) 88, 1834
Tsp45I GTSAC 2 cut(s) 88, 1834
TspDTI ATGAA 9 cut(s) 446, 497, 509, 561, 632, 975, 1095, 1329, 1743
TspGWI ACGGA 3 cut(s) 1027, 1808, 1829
TspRI CASTG 9 cut(s) 289, 775, 991, 1078, 1119, 1221, 1267, 1598, 1656
Vha464I CTTAAG 1 cut(s) 1685
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 1122
XapI RAATTY 4 cut(s) 95, 620, 847, 1441
XbaI TCTAGA 1 cut(s) 1153
XceI RCATGY 3 cut(s) 1260, 1294, 1500
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 4 cut(s) 308, 896, 944, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.