RLG00000011617

Neurochondrin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010867
Physical Location & Seq
Reverse (-)
11036654 .. 11044546
7893 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011617

Sequence Viewer

Length: 2016 bp
ATGGGCCCTCAGAATATGGTCGTTCCGGCCCAAAATCAAATCATCACTGCAAAAAGACTCAGGAATCCCCGAAGCCTCCAGAAGTTCAAAAAACCCTCCAAAAATCTCAATCGTCTGTTTTTCTCAGCTCTCAAGTCTCCCATGGACCAATCGTCTCCGGCGCTCGATGACTGCTTGAAGCTACTGAAAGGCGAAAGAGACGAGCAGCGCCTCGCTGGACTTCTCCTCGTCACCAAATTCTGCAAAGGCGACGACCTCTCCTCCCTCCTCACTATCTATGACGCCGTCGGCGTCCAATTTCTCGACCGGCTCCTCCGGACTGGAATGGGAAAGGGAAGCATAAGTGAAAACCAAGAGGCGTATTTGCAGCTTTCAGTTACTGTTCTTGCTGCATTCTGCCGTGTTCCTGAAATTGCTGCTTCAAATGACATGGTTTCGAAGATTCCGCTAGTCCTTGAAGTTTTATCCAAAGAATCATGCCCAGCTGTTCTGGAAGAATGCTACGAGTTTCTATATTTGGTTTCGATGGCTTCTGAAGATGGAATCATGACATTTTACTCATCTGGGGGCATGAAAATGCTGGCTTCTCATATGCCCATTTTACCCGATGGTTCACATCAGATGAAAGTCAGTATGAAACTTGTGCAATTGCTACTAAATAAGTTCTATCCTGACCGCATTAACAATGACTATCTACCAGAGCTTTCAATGATTGTGGCTGCAATAGCAAGGCAATTTTCTGTCTTGCATGATGCTATGAAATTTGATGCTCTGCACATACTGACGGCTGTCTTCTCACCAAAATTTTCGGCACCGCTTTATGATTCTCTTCATGTACTTCCCGAAAAAAATTGGCCCGATTATATGCGTGATGGTATTGCTGCCATTCTACAAAACCGTGTTGCACCTACTGAAAAGCTACAGGCACTTATTTTGGCGGAGTCTATGGTGACGATATTCGGGGAAAAGTGGCTGGTAGGTCAGATAAATTCAGCTGATGGAAAAGGGCCTATTCCAACAGATAGGTGCTTAGTGCTAGTGCTGGAGCAATCAAGGGTTGAAGTTGCTGTTCTTCTGAATGAGCTAGCTTACTTAAAAGATGAAGCATCTAAGAAATCTTCACCCGCTGCTGAGACAATCCTTTTAAAGAAACGGAATGTGGCTATTGCCTTTTCCTTACTGGAAAAGATAATTAATTTAATATCAAATGTGAGTGAGAATGAAGGGGACCTTATCCACGAAAATACTTTGTCAATGGTCATTAATGGCCTTAATGAGACGATTGGTGTAGTTCTAGAGTATTTACAAGATGCAAAGGAACATGAACAAAGGAAGGGAGATGATCTTCTGGCTTCAGTGCGGGTTATAGGCAGCTATCTTGCAGAAGCACCTCTTGCATGCAGAGAGAAGGTTAGAGAACTTTTAGAGTATATGCTCTCTATTGAAGGTGAAGATGAACCAAGACCCTTCTATGCTATATGCTTTTTGCTTCCAATGCTGTGTCAATTGACAATGGAGGTCGAAGGATGTAAAGCGTTGATTTCTTGTGGAGGTCATAAGTCTGTTGTTGATTGCCTTGTAAATTTGATTGGGCCACATGGTTACAAGGTGGAGGATAGGGGCTGCATCTTTTTGGCATGTGACACCATCTTGAATCTTCTTCTAAAGAAAGAGCAAGTGCAAGCCCCATTGGATTATTCGACTATCGTCAATCTATTGAAAGCGTTGGCATGCTGGACAGAGGGTGTAGATGACCCATCAATCATAATGACGGCATCAAGTATTTGCACACTGCTGTTTGACTTTACTTCGGAGAAGGCTCTTCTTAAGCATCCCAACTTTGATGACAGTTGTCTTAATAATCTGTCTTGGCTCATTGCAAGAAGCATGGCTGCATGGGGACAGGATATGTCTGATGCTGCTAAAGCCGAAACAGATCTTCTTGATATTGTTACAGCAGGATATTCTCGATGGGTCACTCGCTTCCCTTGTGTAAGAGATGCTGTTGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neurochondrin

Protein Analysis

672

Amino Acids

74.49

Weight (kDa)

5.29

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neurochondrin PF05536 51 - 633 2.9e-131 Neurochondrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 811
AccIII TCCGGA 1 cut(s) 315
AciI CCGC 6 cut(s) 446, 676, 815, 938, 1125, 1360
AcsI RAATTY 5 cut(s) 236, 761, 803, 988, 1582
AcuI CTGAAG 2 cut(s) 555, 1338
AcyI GRCGYC 2 cut(s) 282, 291
AfaI GTAC 1 cut(s) 837
AflII CTTAAG 1 cut(s) 1826
AgsI TTSAA 9 cut(s) 88, 178, 423, 458, 708, 1061, 1445, 1654, 1720
AhdI GACNNNNNGTC 1 cut(s) 151
Alw26I GTCTC 5 cut(s) 141, 159, 192, 1127, 1271
AlwNI CAGNNNCTG 1 cut(s) 380
Aor13HI TCCGGA 1 cut(s) 315
AoxI GGCC 6 cut(s) 4, 27, 854, 1007, 1267, 1592
ApaI GGGCCC 1 cut(s) 8
ApoI RAATTY 5 cut(s) 236, 761, 803, 988, 1582
AseI ATTAAT 2 cut(s) 1194, 1263
AspLEI GCGC 2 cut(s) 163, 210
AspS9I GGNCC 8 cut(s) 4, 5, 28, 145, 855, 1007, 1228, 1592
AsuHPI GGTGA 5 cut(s) 223, 789, 961, 1113, 1460
AsuII TTCGAA 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 1084
AvaII GGWCC 2 cut(s) 145, 1228
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 811
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 784
BccI CCATC 8 cut(s) 520, 533, 602, 866, 992, 1655, 1765, 1965
BceAI ACGGC 4 cut(s) 269, 384, 801, 1788
BcoDI GTCTC 5 cut(s) 141, 159, 192, 1127, 1271
BfaI CTAG 4 cut(s) 449, 1037, 1085, 1295
BfmI CTRYAG 1 cut(s) 920
BfoI RGCGCY 2 cut(s) 164, 211
BfrI CTTAAG 1 cut(s) 1826
BglII AGATCT 1 cut(s) 1936
Bme18I GGWCC 2 cut(s) 145, 1228
BmeRI GACNNNNNGTC 1 cut(s) 151
BmgT120I GGNCC 8 cut(s) 4, 5, 28, 145, 855, 1007, 1228, 1592
BmiI GGNNCC 4 cut(s) 6, 311, 813, 1229
BmsI GCATC 9 cut(s) 742, 757, 1115, 1300, 1635, 1784, 1840, 1906, 1990
BmtI GCTAGC 1 cut(s) 1088
BoxI GACNNNNGTC 3 cut(s) 788, 1706, 1851
BpiI GAAGAC 1 cut(s) 784
BpmI CTGGAG 2 cut(s) 62, 1064
Bpu14I TTCGAA 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 116
BsaHI GRCGYC 2 cut(s) 282, 291
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 315
BsaXI ACNNNNNCTCC 4 cut(s) 242, 245, 272, 275
Bse118I RCCGGY 1 cut(s) 306
Bse1I ACTGG 2 cut(s) 325, 1185
Bse3DI GCAATG 1 cut(s) 1875
BseAI TCCGGA 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 1532, 1831
BseMI GCAATG 1 cut(s) 1875
BseMII CTCAG 4 cut(s) 23, 73, 138, 1122
BseNI ACTGG 2 cut(s) 325, 1185
BseRI GAGGAG 4 cut(s) 215, 250, 257, 302
BseSI GKGCMC 1 cut(s) 8
BseYI CCCAGC 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 758
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 6 cut(s) 6, 29, 856, 1009, 1269, 1594
BshNI GGYRCC 1 cut(s) 811
BsiEI CGRYCG 1 cut(s) 307
BsiSI CCGG 4 cut(s) 26, 158, 307, 316
BslFI GGGAC 2 cut(s) 1241, 1914
BsmAI GTCTC 5 cut(s) 141, 159, 192, 1127, 1271
BsmBI CGTCTC 3 cut(s) 159, 192, 1271
BsmFI GGGAC 2 cut(s) 1241, 1914
BsmI GAATGC 2 cut(s) 392, 503
BsnI GGCC 6 cut(s) 6, 29, 856, 1009, 1269, 1594
Bsp119I TTCGAA 1 cut(s) 437
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 315
Bsp143I GATC 2 cut(s) 1342, 1936
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 6 cut(s) 446, 676, 815, 938, 1125, 1360
BspANI GGCC 6 cut(s) 6, 29, 856, 1009, 1269, 1594
BspCNI CTCAG 4 cut(s) 22, 72, 137, 1123
BspEI TCCGGA 1 cut(s) 315
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 4 cut(s) 6, 311, 813, 1229
BspOI GCTAGC 1 cut(s) 1088
BspQI GCTCTTC 1 cut(s) 1827
BspT104I TTCGAA 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 811
BspTI CTTAAG 1 cut(s) 1826
BsrDI GCAATG 1 cut(s) 1875
BsrFI RCCGGY 1 cut(s) 306
BsrI ACTGG 2 cut(s) 325, 1185
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 1342, 1936
BssNI GRCGYC 2 cut(s) 282, 291
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 3 cut(s) 382, 899, 1850
Bst6I CTCTTC 2 cut(s) 834, 1827
BstACI GRCGYC 2 cut(s) 282, 291
BstAFI CTTAAG 1 cut(s) 1826
BstAPI GCANNNNNTGC 1 cut(s) 1394
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 5 cut(s) 582, 1086, 1399, 1683, 1732
BstDEI CTNAG 6 cut(s) 9, 59, 124, 1030, 1110, 1131
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 1532, 1831
BstH2I RGCGCY 2 cut(s) 164, 211
BstHHI GCGC 2 cut(s) 163, 210
BstKTI GATC 2 cut(s) 1345, 1939
BstMAI GTCTC 5 cut(s) 141, 159, 192, 1127, 1271
BstMBI GATC 2 cut(s) 1342, 1936
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 4 cut(s) 725, 1394, 1495, 1925
BstNSI RCATGY 3 cut(s) 1401, 1641, 1734
BstPAI GACNNNNGTC 3 cut(s) 788, 1706, 1851
BstSFI CTRYAG 1 cut(s) 920
BstSLI GKGCMC 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 784
BstX2I RGATCY 1 cut(s) 1936
BstYI RGATCY 1 cut(s) 1936
BsuRI GGCC 6 cut(s) 6, 29, 856, 1009, 1269, 1594
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 1532, 1831
BtsI GCAGTG 2 cut(s) 45, 1790
BtsIMutI CAGTG 3 cut(s) 45, 1362, 1790
Cac8I GCNNGC 5 cut(s) 582, 1086, 1399, 1683, 1732
CaiI CAGNNNCTG 1 cut(s) 380
CciI TCATGA 1 cut(s) 546
CfoI GCGC 2 cut(s) 163, 210
Cfr10I RCCGGY 1 cut(s) 306
Cfr13I GGNCC 8 cut(s) 4, 5, 28, 145, 855, 1007, 1228, 1592
CseI GACGC 2 cut(s) 280, 290
Csp6I GTAC 1 cut(s) 836
CspCI CAANNNNNGTGG 2 cut(s) 696, 731
CviQI GTAC 1 cut(s) 836
DdeI CTNAG 6 cut(s) 9, 59, 124, 1030, 1110, 1131
DpnI GATC 2 cut(s) 1344, 1938
DpnII GATC 2 cut(s) 1342, 1936
DraI TTTAAA 1 cut(s) 1146
DriI GACNNNNNGTC 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 834, 1827
Eam1105I GACNNNNNGTC 1 cut(s) 151
EarI CTCTTC 2 cut(s) 834, 1827
EciI GGCGGA 1 cut(s) 953
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 2 cut(s) 145, 1228
Eco57I CTGAAG 2 cut(s) 555, 1338
EcoO109I RGGNCCY 3 cut(s) 5, 1007, 1228
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 3 cut(s) 159, 192, 1271
FalI AAGNNNNNCTT 4 cut(s) 1215, 1247, 1377, 1409
FaqI GGGAC 2 cut(s) 1241, 1914
FauI CCCGC 2 cut(s) 1132, 1353
FauNDI CATATG 1 cut(s) 591
FokI GGATG 2 cut(s) 1539, 1818
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 4 cut(s) 449, 1037, 1085, 1295
GlaI GCGC 2 cut(s) 162, 209
GsaI CCCAGC 1 cut(s) 485
GsuI CTGGAG 2 cut(s) 62, 1064
HaeII RGCGCY 2 cut(s) 164, 211
HaeIII GGCC 6 cut(s) 6, 29, 856, 1009, 1269, 1594
HapII CCGG 4 cut(s) 26, 158, 307, 316
HgaI GACGC 2 cut(s) 280, 290
HhaI GCGC 2 cut(s) 163, 210
Hin1I GRCGYC 2 cut(s) 282, 291
Hin6I GCGC 2 cut(s) 161, 208
HinP1I GCGC 2 cut(s) 161, 208
HinfI GANTC 8 cut(s) 57, 64, 442, 473, 543, 824, 941, 1654
HpaII CCGG 4 cut(s) 26, 158, 307, 316
HphI GGTGA 5 cut(s) 223, 789, 961, 1113, 1460
Hpy166II GTNNAC 1 cut(s) 614
Hpy188I TCNGA 7 cut(s) 12, 535, 621, 984, 1077, 1813, 1915
Hpy8I GTNNAC 1 cut(s) 614
Hpy99I CGWCG 2 cut(s) 254, 290
HpyAV CCTTC 7 cut(s) 1217, 1327, 1402, 1439, 1477, 1517, 1810
HpyCH4III ACNGT 3 cut(s) 382, 899, 1850
HpyF10VI GCNNNNNNNGC 4 cut(s) 725, 1394, 1495, 1925
HpyF3I CTNAG 6 cut(s) 9, 59, 124, 1030, 1110, 1131
Hsp92I GRCGYC 2 cut(s) 282, 291
HspAI GCGC 2 cut(s) 161, 208
Kpn2I TCCGGA 1 cut(s) 315
Kzo9I GATC 2 cut(s) 1342, 1936
LguI GCTCTTC 1 cut(s) 1827
LmnI GCTCC 2 cut(s) 315, 1045
LweI GCATC 9 cut(s) 742, 757, 1115, 1300, 1635, 1784, 1840, 1906, 1990
MaeI CTAG 4 cut(s) 449, 1037, 1085, 1295
MaeIII GTNAC 7 cut(s) 229, 376, 949, 1601, 1640, 1951, 1975
MalI GATC 2 cut(s) 1344, 1938
MboI GATC 2 cut(s) 1342, 1936
MfeI CAATTG 2 cut(s) 647, 1505
MflI RGATCY 1 cut(s) 1936
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 2 cut(s) 51, 950
MmeI TCCRAC 1 cut(s) 1040
MroI TCCGGA 1 cut(s) 315
MseI TTAA 9 cut(s) 681, 1094, 1145, 1194, 1199, 1263, 1272, 1827, 1857
MslI CAYNNNNRTG 1 cut(s) 575
MspA1I CMGCKG 3 cut(s) 485, 995, 1127
MspCI CTTAAG 1 cut(s) 1826
MspI CCGG 4 cut(s) 26, 158, 307, 316
MunI CAATTG 2 cut(s) 647, 1505
Mva1269I GAATGC 2 cut(s) 392, 503
MwoI GCNNNNNNNGC 4 cut(s) 725, 1394, 1495, 1925
NcoI CCATGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 591
NdeII GATC 2 cut(s) 1342, 1936
NheI GCTAGC 1 cut(s) 1084
NlaIV GGNNCC 4 cut(s) 6, 311, 813, 1229
NmuCI GTSAC 4 cut(s) 229, 949, 1640, 1975
NspI RCATGY 3 cut(s) 1401, 1641, 1734
NspV TTCGAA 1 cut(s) 437
PaeI GCATGC 2 cut(s) 1401, 1734
PagI TCATGA 1 cut(s) 546
PciSI GCTCTTC 1 cut(s) 1827
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 2 cut(s) 392, 503
PfeI GAWTC 6 cut(s) 64, 442, 473, 543, 824, 1654
PflFI GACNNNGTC 1 cut(s) 284
PleI GAGTC 2 cut(s) 51, 949
PpsI GAGTC 2 cut(s) 51, 949
PpuMI RGGWCCY 1 cut(s) 1228
PshAI GACNNNNGTC 3 cut(s) 788, 1706, 1851
PshBI ATTAAT 2 cut(s) 1194, 1263
Psp5II RGGWCCY 1 cut(s) 1228
PspFI CCCAGC 1 cut(s) 481
PspN4I GGNNCC 4 cut(s) 6, 311, 813, 1229
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 8 cut(s) 4, 5, 28, 145, 855, 1007, 1228, 1592
PspPPI RGGWCCY 1 cut(s) 1228
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 1 cut(s) 1936
PsyI GACNNNGTC 1 cut(s) 284
PvuII CAGCTG 2 cut(s) 485, 995
RsaI GTAC 1 cut(s) 837
RsaNI GTAC 1 cut(s) 836
RseI CAYNNNNRTG 1 cut(s) 575
SapI GCTCTTC 1 cut(s) 1827
SaqAI TTAA 9 cut(s) 681, 1094, 1145, 1194, 1199, 1263, 1272, 1827, 1857
Sau3AI GATC 2 cut(s) 1342, 1936
Sau96I GGNCC 8 cut(s) 4, 5, 28, 145, 855, 1007, 1228, 1592
SchI GAGTC 2 cut(s) 51, 950
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 9 cut(s) 742, 757, 1115, 1300, 1635, 1784, 1840, 1906, 1990
SfcI CTRYAG 1 cut(s) 920
SfuI TTCGAA 1 cut(s) 437
SinI GGWCC 2 cut(s) 145, 1228
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 2 cut(s) 131, 1826
SmoI CTYRAG 2 cut(s) 131, 1826
SphI GCATGC 2 cut(s) 1401, 1734
SsiI CCGC 6 cut(s) 446, 676, 815, 938, 1125, 1360
SspMI CTAG 4 cut(s) 449, 1037, 1085, 1295
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 382, 899, 1850
TaqI TCGA 7 cut(s) 165, 303, 437, 524, 1521, 1700, 1969
TatI WGTACW 1 cut(s) 835
TfiI GAWTC 6 cut(s) 64, 442, 473, 543, 824, 1654
Tru1I TTAA 9 cut(s) 681, 1094, 1145, 1194, 1199, 1263, 1272, 1827, 1857
Tru9I TTAA 9 cut(s) 681, 1094, 1145, 1194, 1199, 1263, 1272, 1827, 1857
TscAI CASTG 3 cut(s) 52, 1362, 1797
TseFI GTSAC 4 cut(s) 229, 949, 1640, 1975
Tsp45I GTSAC 4 cut(s) 229, 949, 1640, 1975
TspDTI ATGAA 9 cut(s) 587, 638, 650, 773, 821, 1116, 1236, 1338, 1470
TspGWI ACGGA 1 cut(s) 1168
TspRI CASTG 3 cut(s) 52, 1362, 1797
Tth111I GACNNNGTC 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 1826
VpaK11BI GGWCC 2 cut(s) 145, 1228
VspI ATTAAT 2 cut(s) 1194, 1263
XapI RAATTY 5 cut(s) 236, 761, 803, 988, 1582
XbaI TCTAGA 1 cut(s) 1294
XceI RCATGY 3 cut(s) 1401, 1641, 1734
XspI CTAG 4 cut(s) 449, 1037, 1085, 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.