Rh6AG381300

Neurochondrin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010867
Physical Location & Seq
Forward (+)
58068903 .. 58074512
5610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG381300.1

Sequence Viewer

Length: 1353 bp
ATGGACCAATCGTCTCCGGCGCTCGATGACTGCTTGAAGCTACTGAAAGGCGAAAGAGACGAGCAGCGCCTCGCCGGACTTCTCCTCGTCACCAAATTCTGCAAAGGAGACGACCTCTCCTCCCTCCTCACTATCTATGACGCCGTCGGCGTCCAATTTCTCGACCGGCTCCTCCGGACTGGAATGGGAAAGGGAAGCATAAGCGAAAACCAAGAGGCGTATTTGCAGCTTTCAGTTACTGTTCTTGCCGCATTCTGCCGTGTTCCTGAAATTGCTGCTTCAAATGACATGGTTTCAAAGATTCCGCTAGTACTTGAAGTTTTATCCAAAGAATCAGGCCCAGCTGTTCTTGAAGAATGCTACGAGTTTCTATATTTGGTTTCTACGGCTTCTGAAGATGGAATTATGACATTTTACTCATCTGGGGGCATGAAAATACTGGCTTCTCATATGCCCAATTTACCTGATGGTTCACATCAGATGAAAATCACTATGAAACTTGTGCAGTTGCTACTAAATAAGTTCTATCCTGACCGCATTAACAATGACTATCTACCAGAGCTGTCAATAATTGTGGCTGCAATAGCAAGGCAATTTTCTATCTTGCATGATGCTATGAAATTTGATGCGCTGCACATACTGACGGCCATCTTCTCACCAAAATTTTTGGCACCGTTTTATGATTCTCTTCGTGCACTTCCCGAAAAATATTGGCCCGATTATATGCGTGATGGTATTGCTGCCATTCTACAAAACCGTGTTGCACCTACTGAAAAGCTTCAGGCACTTATTTTGGCTGAGTCTATGGTGACGATATTCGGGGAAAAGTGGCTGGTAGGTCAGATAAATTCAGCTGATGGAAAAGGGCCTTTTCCAACAGATAGGTGCTTAGTGCTAGTGCTGGAGCAATCAAGGGTTGAAGTTGCTGTTCTTCTGAATGAGCTAGCTTACTTAAAAGATGAAGCATCTAAGAAATCTTCACCCGCTGCTGAGACAATCTTTTTAAAGAAACGGAATGTAGCTATTGCCTTTTCCTTACTGGAAAAGATAATTAATTTAATATCAAATGCGAGTGAGAATGAAGGGGACCTTATCCACGAAAATACTTTGTCAATGGTCATTAATGGCCTTAATGAGACAATTGGTGTAGTTCTAGAGTATTTACAAGATGCAAAGGAACATGAACAAAGGAAGGGAGATGATCTTCTGGCTTCAGTGCGGGTTATAGGCAGCTATCTTGCAGAAGCACCTCTTGCATGCAGAGAGAAGGTTAGAGAACTTTTAGAGTATATGCTCTCTATTGAAGACCCTTCTATGCTATATACTTTTTGCTTCCAATGCTGTGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neurochondrin

Protein Analysis

450

Amino Acids

50.05

Weight (kDa)

4.93

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neurochondrin PF05536 4 - 436 3.1e-113 Neurochondrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 670
AccIII TCCGGA 1 cut(s) 174
AciI CCGC 5 cut(s) 249, 305, 535, 984, 1219
AcoI YGGCCR 1 cut(s) 645
AcsI RAATTY 4 cut(s) 95, 620, 662, 847
AcuI CTGAAG 3 cut(s) 414, 764, 1197
AcyI GRCGYC 2 cut(s) 141, 150
AfaI GTAC 1 cut(s) 312
AgsI TTSAA 7 cut(s) 37, 282, 297, 317, 353, 920, 1304
AhdI GACNNNNNGTC 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 5 cut(s) 18, 51, 102, 986, 1130
Alw44I GTGCAC 1 cut(s) 693
AlwNI CAGNNNCTG 1 cut(s) 239
Aor13HI TCCGGA 1 cut(s) 174
AoxI GGCC 5 cut(s) 337, 645, 713, 866, 1126
ApaLI GTGCAC 1 cut(s) 693
ApeKI GCWGC 8 cut(s) 64, 226, 275, 578, 631, 740, 986, 1230
ApoI RAATTY 4 cut(s) 95, 620, 662, 847
AseI ATTAAT 2 cut(s) 1053, 1122
Asp700I GAANNNNTTC 1 cut(s) 777
AspLEI GCGC 3 cut(s) 22, 69, 631
AspS9I GGNCC 5 cut(s) 4, 338, 714, 866, 1087
AsuHPI GGTGA 4 cut(s) 82, 648, 820, 972
AsuNHI GCTAGC 1 cut(s) 943
AvaII GGWCC 2 cut(s) 4, 1087
BaeGI GKGCMC 1 cut(s) 697
BanI GGYRCC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 1311
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 8 cut(s) 76, 238, 262, 565, 618, 727, 973, 1242
BccI CCATC 5 cut(s) 392, 461, 656, 725, 851
BceAI ACGGC 4 cut(s) 128, 243, 402, 660
BcoDI GTCTC 5 cut(s) 18, 51, 102, 986, 1130
BfaI CTAG 4 cut(s) 308, 896, 944, 1154
BfoI RGCGCY 2 cut(s) 23, 70
BisI GCNGC 9 cut(s) 65, 227, 249, 276, 579, 632, 741, 987, 1231
BlsI GCNGC 9 cut(s) 66, 228, 250, 277, 580, 633, 742, 988, 1232
BmcAI AGTACT 1 cut(s) 312
Bme18I GGWCC 2 cut(s) 4, 1087
BmeRI GACNNNNNGTC 1 cut(s) 10
BmgT120I GGNCC 5 cut(s) 4, 338, 714, 866, 1087
BmiI GGNNCC 3 cut(s) 170, 672, 1088
BmsI GCATC 4 cut(s) 601, 616, 974, 1159
BmtI GCTAGC 1 cut(s) 947
BpiI GAAGAC 1 cut(s) 1311
BplI GAGNNNNNCTC 2 cut(s) 99, 131
BpmI CTGGAG 1 cut(s) 923
BsaBI GATNNNNATC 1 cut(s) 485
BsaHI GRCGYC 2 cut(s) 141, 150
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 4 cut(s) 101, 104, 131, 134
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 3 cut(s) 184, 444, 1044
Bse8I GATNNNNATC 1 cut(s) 485
BseAI TCCGGA 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 485
BseMII CTCAG 2 cut(s) 789, 981
BseNI ACTGG 3 cut(s) 184, 444, 1044
BseRI GAGGAG 4 cut(s) 74, 109, 116, 161
BseSI GKGCMC 1 cut(s) 697
BseXI GCAGC 8 cut(s) 76, 238, 262, 565, 618, 727, 973, 1242
BseYI CCCAGC 1 cut(s) 340
BsgI GTGCAG 2 cut(s) 524, 617
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 5 cut(s) 339, 647, 715, 868, 1128
BshNI GGYRCC 1 cut(s) 670
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 4 cut(s) 17, 75, 166, 175
BslFI GGGAC 1 cut(s) 1100
BsmAI GTCTC 5 cut(s) 18, 51, 102, 986, 1130
BsmBI CGTCTC 3 cut(s) 18, 51, 102
BsmFI GGGAC 1 cut(s) 1100
BsmI GAATGC 2 cut(s) 251, 362
BsnI GGCC 5 cut(s) 339, 647, 715, 868, 1128
Bsp1286I GDGCHC 1 cut(s) 697
Bsp13I TCCGGA 1 cut(s) 174
Bsp143I GATC 1 cut(s) 1201
BspACI CCGC 5 cut(s) 249, 305, 535, 984, 1219
BspANI GGCC 5 cut(s) 339, 647, 715, 868, 1128
BspCNI CTCAG 2 cut(s) 790, 982
BspEI TCCGGA 1 cut(s) 174
BspLI GGNNCC 3 cut(s) 170, 672, 1088
BspOI GCTAGC 1 cut(s) 947
BspT107I GGYRCC 1 cut(s) 670
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 3 cut(s) 184, 444, 1044
BssAI RCCGGY 1 cut(s) 165
BssMI GATC 1 cut(s) 1201
BssNI GRCGYC 2 cut(s) 141, 150
Bst4CI ACNGT 3 cut(s) 241, 675, 758
Bst6I CTCTTC 1 cut(s) 693
BstACI GRCGYC 2 cut(s) 141, 150
BstAPI GCANNNNNTGC 1 cut(s) 1253
BstC8I GCNNGC 2 cut(s) 945, 1258
BstDEI CTNAG 4 cut(s) 798, 889, 969, 990
BstH2I RGCGCY 2 cut(s) 23, 70
BstHHI GCGC 3 cut(s) 22, 69, 631
BstKTI GATC 1 cut(s) 1204
BstMAI GTCTC 5 cut(s) 18, 51, 102, 986, 1130
BstMBI GATC 1 cut(s) 1201
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 3 cut(s) 584, 1253, 1338
BstNSI RCATGY 1 cut(s) 1260
BstSLI GKGCMC 1 cut(s) 697
BstV1I GCAGC 8 cut(s) 76, 238, 262, 565, 618, 727, 973, 1242
BstV2I GAAGAC 1 cut(s) 1311
BsuRI GGCC 5 cut(s) 339, 647, 715, 868, 1128
BtsIMutI CAGTG 1 cut(s) 1221
Cac8I GCNNGC 2 cut(s) 945, 1258
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 3 cut(s) 22, 69, 631
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 5 cut(s) 4, 338, 714, 866, 1087
CseI GACGC 2 cut(s) 139, 149
Csp6I GTAC 1 cut(s) 311
CspCI CAANNNNNGTGG 2 cut(s) 555, 590
CviAII CATG 5 cut(s) 289, 430, 608, 1181, 1257
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 4 cut(s) 798, 889, 969, 990
DpnI GATC 1 cut(s) 1203
DpnII GATC 1 cut(s) 1201
DraI TTTAAA 1 cut(s) 1005
DriI GACNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 645
Eam1104I CTCTTC 1 cut(s) 693
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 693
Eco47I GGWCC 2 cut(s) 4, 1087
Eco57I CTGAAG 3 cut(s) 414, 764, 1197
EcoO109I RGGNCCY 2 cut(s) 866, 1087
Esp3I CGTCTC 3 cut(s) 18, 51, 102
FaeI CATG 5 cut(s) 292, 433, 611, 1184, 1260
FalI AAGNNNNNCTT 4 cut(s) 1074, 1106, 1236, 1268
FaqI GGGAC 1 cut(s) 1100
FatI CATG 5 cut(s) 288, 429, 607, 1180, 1256
FauI CCCGC 2 cut(s) 991, 1212
FauNDI CATATG 1 cut(s) 450
Fnu4HI GCNGC 9 cut(s) 65, 227, 249, 276, 579, 632, 741, 987, 1231
Fsp4HI GCNGC 9 cut(s) 65, 227, 249, 276, 579, 632, 741, 987, 1231
FspBI CTAG 4 cut(s) 308, 896, 944, 1154
GlaI GCGC 3 cut(s) 21, 68, 630
GluI GCNGC 9 cut(s) 65, 227, 249, 276, 579, 632, 741, 987, 1231
GsaI CCCAGC 1 cut(s) 344
GsuI CTGGAG 1 cut(s) 923
HaeII RGCGCY 2 cut(s) 23, 70
HaeIII GGCC 5 cut(s) 339, 647, 715, 868, 1128
HapII CCGG 4 cut(s) 17, 75, 166, 175
HgaI GACGC 2 cut(s) 139, 149
HhaI GCGC 3 cut(s) 22, 69, 631
Hin1I GRCGYC 2 cut(s) 141, 150
Hin1II CATG 5 cut(s) 292, 433, 611, 1184, 1260
Hin6I GCGC 3 cut(s) 20, 67, 629
HinP1I GCGC 3 cut(s) 20, 67, 629
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 4 cut(s) 301, 332, 683, 800
HpaII CCGG 4 cut(s) 17, 75, 166, 175
HphI GGTGA 4 cut(s) 82, 648, 820, 972
Hpy166II GTNNAC 2 cut(s) 473, 695
Hpy188I TCNGA 4 cut(s) 394, 480, 843, 936
Hpy188III TCNNGA 7 cut(s) 161, 175, 266, 350, 530, 701, 1154
Hpy8I GTNNAC 2 cut(s) 473, 695
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 4 cut(s) 1076, 1186, 1261, 1320
HpyCH4III ACNGT 3 cut(s) 241, 675, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 584, 1253, 1338
HpyF3I CTNAG 4 cut(s) 798, 889, 969, 990
Hsp92I GRCGYC 2 cut(s) 141, 150
Hsp92II CATG 5 cut(s) 292, 433, 611, 1184, 1260
HspAI GCGC 3 cut(s) 20, 67, 629
Kpn2I TCCGGA 1 cut(s) 174
Kzo9I GATC 1 cut(s) 1201
LmnI GCTCC 2 cut(s) 174, 904
Lsp1109I GCAGC 8 cut(s) 76, 238, 262, 565, 618, 727, 973, 1242
LweI GCATC 4 cut(s) 601, 616, 974, 1159
MaeI CTAG 4 cut(s) 308, 896, 944, 1154
MaeIII GTNAC 3 cut(s) 88, 235, 808
MalI GATC 1 cut(s) 1203
MboI GATC 1 cut(s) 1201
MboII GAAGA 8 cut(s) 365, 407, 643, 680, 923, 969, 1196, 1316
MfeI CAATTG 2 cut(s) 1140, 1348
MhlI GDGCHC 1 cut(s) 697
MlyI GAGTC 1 cut(s) 809
MmeI TCCRAC 1 cut(s) 899
MnlI CCTC 9 cut(s) 80, 95, 125, 130, 134, 137, 182, 208, 1260
MroI TCCGGA 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 777
MseI TTAA 7 cut(s) 540, 953, 1004, 1053, 1058, 1122, 1131
MspA1I CMGCKG 3 cut(s) 344, 854, 986
MspI CCGG 4 cut(s) 17, 75, 166, 175
MunI CAATTG 2 cut(s) 1140, 1348
Mva1269I GAATGC 2 cut(s) 251, 362
MwoI GCNNNNNNNGC 3 cut(s) 584, 1253, 1338
NdeI CATATG 1 cut(s) 450
NdeII GATC 1 cut(s) 1201
NheI GCTAGC 1 cut(s) 943
NlaIII CATG 5 cut(s) 292, 433, 611, 1184, 1260
NlaIV GGNNCC 3 cut(s) 170, 672, 1088
NmuCI GTSAC 2 cut(s) 88, 808
NspI RCATGY 1 cut(s) 1260
PaeI GCATGC 1 cut(s) 1260
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 2 cut(s) 251, 362
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 3 cut(s) 301, 332, 683
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 9 cut(s) 66, 228, 250, 277, 580, 633, 742, 988, 1232
PleI GAGTC 1 cut(s) 808
PpsI GAGTC 1 cut(s) 808
PpuMI RGGWCCY 1 cut(s) 1087
PshBI ATTAAT 2 cut(s) 1053, 1122
Psp5II RGGWCCY 1 cut(s) 1087
PspFI CCCAGC 1 cut(s) 340
PspN4I GGNNCC 3 cut(s) 170, 672, 1088
PspPI GGNCC 5 cut(s) 4, 338, 714, 866, 1087
PspPPI RGGWCCY 1 cut(s) 1087
PstNI CAGNNNCTG 1 cut(s) 239
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 2 cut(s) 344, 854
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
SaqAI TTAA 7 cut(s) 540, 953, 1004, 1053, 1058, 1122, 1131
SatI GCNGC 9 cut(s) 65, 227, 249, 276, 579, 632, 741, 987, 1231
Sau3AI GATC 1 cut(s) 1201
Sau96I GGNCC 5 cut(s) 4, 338, 714, 866, 1087
ScaI AGTACT 1 cut(s) 312
SchI GAGTC 1 cut(s) 809
SduI GDGCHC 1 cut(s) 697
SfaNI GCATC 4 cut(s) 601, 616, 974, 1159
SinI GGWCC 2 cut(s) 4, 1087
SphI GCATGC 1 cut(s) 1260
SsiI CCGC 5 cut(s) 249, 305, 535, 984, 1219
SspI AATATT 1 cut(s) 710
SspMI CTAG 4 cut(s) 308, 896, 944, 1154
TaaI ACNGT 3 cut(s) 241, 675, 758
TaqI TCGA 2 cut(s) 24, 162
TatI WGTACW 1 cut(s) 310
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 3 cut(s) 301, 332, 683
Tru1I TTAA 7 cut(s) 540, 953, 1004, 1053, 1058, 1122, 1131
Tru9I TTAA 7 cut(s) 540, 953, 1004, 1053, 1058, 1122, 1131
TscAI CASTG 1 cut(s) 1221
TseFI GTSAC 2 cut(s) 88, 808
TseI GCWGC 8 cut(s) 64, 226, 275, 578, 631, 740, 986, 1230
Tsp45I GTSAC 2 cut(s) 88, 808
TspDTI ATGAA 7 cut(s) 446, 497, 509, 632, 975, 1095, 1197
TspGWI ACGGA 1 cut(s) 1027
TspRI CASTG 1 cut(s) 1221
Tth111I GACNNNGTC 1 cut(s) 143
VneI GTGCAC 1 cut(s) 693
VpaK11BI GGWCC 2 cut(s) 4, 1087
VspI ATTAAT 2 cut(s) 1053, 1122
XapI RAATTY 4 cut(s) 95, 620, 662, 847
XbaI TCTAGA 1 cut(s) 1153
XceI RCATGY 1 cut(s) 1260
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 4 cut(s) 308, 896, 944, 1154
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.