RchiOBHm_Chr6g0297241

Neurochondrin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010867
Physical Location & Seq
Forward (+)
58991680 .. 58997259
5580 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26677

Sequence Viewer

Length: 1878 bp
ATGGACCAATCGTCTCCGGCGCTCGATGACTGCTTGAAGCTACTGAAAGGCGAAAGAGACGAGCAGCGCCTCGCCGGACTTCTCCTCGTCACCAAATTCTGCAAAGGCGACGACCTCTCCTCTCTCCTCACTATCTATGACGCCGTCGGCGTCCAATTTCTCGACCGGCTCCTCCGGACTGGAATGGGAAAGGGAAGCATAAGCGAAAACCAAGAGGCGTATTTGCAGCTTTCAGTTACTGTTCTTGCTGCATTCTGCCGTGTTCCTGAAATTGCTGCTTCAAATGACATGGTTTCGAAGATTCCGCTAGTACTTGAAGTTTTATCCAAAGAATCAGGCCCAGCCGTTCTTGAAGAATGCTACGAGTTTCTATATTTGGTTTCTACGGCTTCTGAAGATGGAATTATGACATTTTACTCATCTGGGGGCATGAAAATGCTGGCTTCTCATATGCCCAATTTACCTGATGGTTCACATCAGATGAAAATCACTATGAAACTTGTGCAGTTGCTACTAACTAAGTTCTATCCTGACCGCATTAACAATGACTATCTACCAGAGCTGTCAATAATTGTGGCTGCAATAGCAAGGCAATTTTCTATCTTGCATGATGCTATGAAATTTGATGCGCTGCACATACTGACGGCCATCTTCTCACCAAAATTTTCGGCACCGCTTTATGATTCTCTTCGTGCACTTCCCGAAAAAATTGGCCCGATTATATGCGTGATGGTATTGCTGCCATTCTACAAAACCGTGTTGGTATCACCTACTGAAAAGCTTCAGGCACTTATTTTGGCTGAGTCTATGGTGACGATATTTGGGGAAAAGTGGCTGGTAGGTCAGATAAATTCAGCTGATGGAAAAGGGCCTTTTCCAACAGATAGGTGCTTAGTGCTAGTGCTGGAGCAATCAAGGGTTGAAGTTGCTGTTCTTCTGAATGAGCTAGCTTACTTAAAAGATGAAGCATCTAAGAAATCTTCACCTGCTGCTGAGACAATCTTTTTAAAGAAACGGAATGTAGCTATTGCCTTTTCCATACTGGAAAAGATAATTAATTTAATATCAAATGCGAGTGAGAATGAAGGGGACCTTATCCACGAAAATACTTTGTCAATGGTCATTAATGGCCTTAATGAGACAATTGGTGTAGTTCTAGAGTATTTACAAGATGCAAAGGAACATGAACAAAGGAAGGGAGATGATCTTCTGGCTTCAGTGCGGGTTATAGGCAGCTATCTTGCAGAAGCACCTCTTGCATGCAGAGAGAAGGTTAGAGAACTTTTAGAGTATATGCTCTCTATTGAAGGTGAAGATGAACCAAGACCCTTCTATGCTATATGCTTTTTGCTTCCAATGCTGTGTCAATTGACAATGGAGGTCAAAGGATGTAAAGCGTTGATTTCTTGTGGAGGTCATAAGTCTGTTGTTGATTGCCTTGTAAATTTGATTGGGCCACATGGTTACAAGGTGGAGGATAGGGGCTGCATCTTTTTGGCATGTGACACCATCTTGAATCTTCTTCTAAAGAAAGAGCAAGTGCAAGCCCCATTGGATTATTCGACTCTCGTCAATCTATTGAAAGCGTTGGCACACTGGACAGAGGGTGTAGATGACCCGTCAATCATAATGATGGCATCAAGTATTTGCACACTGCTGTTTGACTTTACTTCGGAGAAGGCTCTTCTTAAGCATCCCGACTTTGATGAGAGCTGTCTTAATAATCTGTCTCGGCTCATTGCAAGAAGTATGGCTGCATGGGGACAGGATATGTCTGATGCTGCTAAAGCAGAAACAGATCTTCTTGAGATTGTTACGGCAGGATATTCTCGATGGGTCACTCGCTTCCCTTGTGTAAGAGATGCTGTTGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neurochondrin

Protein Analysis

625

Amino Acids

69.15

Weight (kDa)

5.03

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neurochondrin PF05536 4 - 590 5e-121 Neurochondrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 994
Acc36I ACCTGC 1 cut(s) 994
AccB1I GGYRCC 1 cut(s) 670
AccIII TCCGGA 1 cut(s) 174
AciI CCGC 4 cut(s) 305, 535, 674, 1222
AcoI YGGCCR 1 cut(s) 645
AcsI RAATTY 5 cut(s) 95, 620, 662, 850, 1444
AcuI CTGAAG 3 cut(s) 414, 767, 1200
AcyI GRCGYC 2 cut(s) 141, 150
AfaI GTAC 1 cut(s) 312
AflII CTTAAG 1 cut(s) 1688
AgsI TTSAA 8 cut(s) 37, 282, 317, 353, 923, 1307, 1516, 1582
AhdI GACNNNNNGTC 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 5 cut(s) 18, 51, 989, 1133, 1734
Alw44I GTGCAC 1 cut(s) 693
AlwNI CAGNNNCTG 1 cut(s) 239
Aor13HI TCCGGA 1 cut(s) 174
AoxI GGCC 6 cut(s) 337, 645, 712, 869, 1129, 1454
ApaLI GTGCAC 1 cut(s) 693
ApoI RAATTY 5 cut(s) 95, 620, 662, 850, 1444
AseI ATTAAT 2 cut(s) 1056, 1125
Asp700I GAANNNNTTC 1 cut(s) 780
AspLEI GCGC 3 cut(s) 22, 69, 631
AspS9I GGNCC 6 cut(s) 4, 338, 713, 869, 1090, 1454
AsuHPI GGTGA 6 cut(s) 82, 648, 759, 823, 975, 1322
AsuII TTCGAA 1 cut(s) 296
AsuNHI GCTAGC 1 cut(s) 946
AvaII GGWCC 2 cut(s) 4, 1090
BaeGI GKGCMC 1 cut(s) 697
BanI GGYRCC 1 cut(s) 670
Bbv12I GWGCWC 1 cut(s) 697
BccI CCATC 8 cut(s) 392, 461, 656, 724, 854, 1517, 1627, 1827
BceAI ACGGC 6 cut(s) 128, 243, 329, 402, 660, 1833
BcoDI GTCTC 5 cut(s) 18, 51, 989, 1133, 1734
BfaI CTAG 4 cut(s) 308, 899, 947, 1157
BfoI RGCGCY 2 cut(s) 23, 70
BfrI CTTAAG 1 cut(s) 1688
BfuAI ACCTGC 1 cut(s) 994
BglII AGATCT 1 cut(s) 1798
BmcAI AGTACT 1 cut(s) 312
Bme18I GGWCC 2 cut(s) 4, 1090
BmeRI GACNNNNNGTC 1 cut(s) 10
BmgT120I GGNCC 6 cut(s) 4, 338, 713, 869, 1090, 1454
BmiI GGNNCC 3 cut(s) 170, 672, 1091
BmsI GCATC 9 cut(s) 601, 616, 977, 1162, 1497, 1646, 1702, 1768, 1852
BmtI GCTAGC 1 cut(s) 950
BoxI GACNNNNGTC 1 cut(s) 1568
BpmI CTGGAG 1 cut(s) 926
Bpu14I TTCGAA 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 1826
BsaBI GATNNNNATC 1 cut(s) 485
BsaHI GRCGYC 2 cut(s) 141, 150
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 3 cut(s) 184, 1047, 1601
Bse3DI GCAATG 1 cut(s) 1737
Bse8I GATNNNNATC 1 cut(s) 485
BseAI TCCGGA 1 cut(s) 174
BseGI GGATG 2 cut(s) 1394, 1693
BseJI GATNNNNATC 1 cut(s) 485
BseMI GCAATG 1 cut(s) 1737
BseMII CTCAG 2 cut(s) 792, 984
BseNI ACTGG 3 cut(s) 184, 1047, 1601
BseRI GAGGAG 4 cut(s) 74, 109, 116, 161
BseSI GKGCMC 1 cut(s) 697
BseYI CCCAGC 1 cut(s) 340
BsgI GTGCAG 2 cut(s) 524, 617
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 6 cut(s) 339, 647, 714, 871, 1131, 1456
BshNI GGYRCC 1 cut(s) 670
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 4 cut(s) 17, 75, 166, 175
BslFI GGGAC 2 cut(s) 1103, 1776
BsmAI GTCTC 5 cut(s) 18, 51, 989, 1133, 1734
BsmBI CGTCTC 2 cut(s) 18, 51
BsmFI GGGAC 2 cut(s) 1103, 1776
BsmI GAATGC 2 cut(s) 251, 362
BsnI GGCC 6 cut(s) 339, 647, 714, 871, 1131, 1456
Bsp119I TTCGAA 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 697
Bsp13I TCCGGA 1 cut(s) 174
Bsp143I GATC 2 cut(s) 1204, 1798
BspACI CCGC 4 cut(s) 305, 535, 674, 1222
BspANI GGCC 6 cut(s) 339, 647, 714, 871, 1131, 1456
BspCNI CTCAG 2 cut(s) 793, 985
BspEI TCCGGA 1 cut(s) 174
BspLI GGNNCC 3 cut(s) 170, 672, 1091
BspMI ACCTGC 1 cut(s) 994
BspOI GCTAGC 1 cut(s) 950
BspQI GCTCTTC 1 cut(s) 1689
BspT104I TTCGAA 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 670
BspTI CTTAAG 1 cut(s) 1688
BsrDI GCAATG 1 cut(s) 1737
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 3 cut(s) 184, 1047, 1601
BssAI RCCGGY 1 cut(s) 165
BssMI GATC 2 cut(s) 1204, 1798
BssNI GRCGYC 2 cut(s) 141, 150
Bst4CI ACNGT 2 cut(s) 241, 757
Bst6I CTCTTC 2 cut(s) 693, 1689
BstACI GRCGYC 2 cut(s) 141, 150
BstAFI CTTAAG 1 cut(s) 1688
BstAPI GCANNNNNTGC 1 cut(s) 1256
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 4 cut(s) 441, 948, 1261, 1545
BstDEI CTNAG 5 cut(s) 519, 801, 892, 972, 993
BstF5I GGATG 2 cut(s) 1394, 1693
BstH2I RGCGCY 2 cut(s) 23, 70
BstHHI GCGC 3 cut(s) 22, 69, 631
BstKTI GATC 2 cut(s) 1207, 1801
BstMAI GTCTC 5 cut(s) 18, 51, 989, 1133, 1734
BstMBI GATC 2 cut(s) 1204, 1798
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 4 cut(s) 584, 1256, 1357, 1787
BstNSI RCATGY 2 cut(s) 1263, 1503
BstPAI GACNNNNGTC 1 cut(s) 1568
BstSLI GKGCMC 1 cut(s) 697
BstX2I RGATCY 1 cut(s) 1798
BstYI RGATCY 1 cut(s) 1798
BsuRI GGCC 6 cut(s) 339, 647, 714, 871, 1131, 1456
BtsCI GGATG 2 cut(s) 1394, 1693
BtsI GCAGTG 1 cut(s) 1652
BtsIMutI CAGTG 3 cut(s) 1224, 1594, 1652
BveI ACCTGC 1 cut(s) 994
Cac8I GCNNGC 4 cut(s) 441, 948, 1261, 1545
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 3 cut(s) 22, 69, 631
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 6 cut(s) 4, 338, 713, 869, 1090, 1454
CseI GACGC 2 cut(s) 139, 149
Csp6I GTAC 1 cut(s) 311
CspCI CAANNNNNGTGG 2 cut(s) 555, 590
CviAII CATG 8 cut(s) 289, 430, 608, 1184, 1260, 1460, 1500, 1758
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 5 cut(s) 519, 801, 892, 972, 993
DpnI GATC 2 cut(s) 1206, 1800
DpnII GATC 2 cut(s) 1204, 1798
DraI TTTAAA 1 cut(s) 1008
DriI GACNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 645
Eam1104I CTCTTC 2 cut(s) 693, 1689
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 2 cut(s) 693, 1689
Eco47I GGWCC 2 cut(s) 4, 1090
Eco57I CTGAAG 3 cut(s) 414, 767, 1200
EcoO109I RGGNCCY 2 cut(s) 869, 1090
Esp3I CGTCTC 2 cut(s) 18, 51
FaeI CATG 8 cut(s) 292, 433, 611, 1187, 1263, 1463, 1503, 1761
FalI AAGNNNNNCTT 4 cut(s) 1077, 1109, 1239, 1271
FaqI GGGAC 2 cut(s) 1103, 1776
FatI CATG 8 cut(s) 288, 429, 607, 1183, 1259, 1459, 1499, 1757
FauI CCCGC 1 cut(s) 1215
FauNDI CATATG 1 cut(s) 450
FokI GGATG 2 cut(s) 1401, 1680
FspBI CTAG 4 cut(s) 308, 899, 947, 1157
GlaI GCGC 3 cut(s) 21, 68, 630
GsaI CCCAGC 1 cut(s) 344
GsuI CTGGAG 1 cut(s) 926
HaeII RGCGCY 2 cut(s) 23, 70
HaeIII GGCC 6 cut(s) 339, 647, 714, 871, 1131, 1456
HapII CCGG 4 cut(s) 17, 75, 166, 175
HgaI GACGC 2 cut(s) 139, 149
HhaI GCGC 3 cut(s) 22, 69, 631
Hin1I GRCGYC 2 cut(s) 141, 150
Hin1II CATG 8 cut(s) 292, 433, 611, 1187, 1263, 1463, 1503, 1761
Hin6I GCGC 3 cut(s) 20, 67, 629
HinP1I GCGC 3 cut(s) 20, 67, 629
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 6 cut(s) 301, 332, 683, 803, 1516, 1564
HpaII CCGG 4 cut(s) 17, 75, 166, 175
HphI GGTGA 6 cut(s) 82, 648, 759, 823, 975, 1322
Hpy166II GTNNAC 2 cut(s) 473, 695
Hpy188I TCNGA 6 cut(s) 394, 480, 846, 939, 1675, 1777
Hpy8I GTNNAC 2 cut(s) 473, 695
Hpy99I CGWCG 2 cut(s) 113, 149
HpyAV CCTTC 6 cut(s) 1079, 1189, 1264, 1301, 1339, 1672
HpyCH4III ACNGT 2 cut(s) 241, 757
HpyF10VI GCNNNNNNNGC 4 cut(s) 584, 1256, 1357, 1787
HpyF3I CTNAG 5 cut(s) 519, 801, 892, 972, 993
Hsp92I GRCGYC 2 cut(s) 141, 150
Hsp92II CATG 8 cut(s) 292, 433, 611, 1187, 1263, 1463, 1503, 1761
HspAI GCGC 3 cut(s) 20, 67, 629
Kpn2I TCCGGA 1 cut(s) 174
Kzo9I GATC 2 cut(s) 1204, 1798
LguI GCTCTTC 1 cut(s) 1689
LmnI GCTCC 2 cut(s) 174, 907
LweI GCATC 9 cut(s) 601, 616, 977, 1162, 1497, 1646, 1702, 1768, 1852
MaeI CTAG 4 cut(s) 308, 899, 947, 1157
MaeIII GTNAC 7 cut(s) 88, 235, 811, 1463, 1502, 1813, 1837
MalI GATC 2 cut(s) 1206, 1800
MboI GATC 2 cut(s) 1204, 1798
MfeI CAATTG 2 cut(s) 1143, 1367
MflI RGATCY 1 cut(s) 1798
MhlI GDGCHC 1 cut(s) 697
MlyI GAGTC 2 cut(s) 812, 1558
MmeI TCCRAC 1 cut(s) 902
MroI TCCGGA 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 780
MseI TTAA 9 cut(s) 540, 956, 1007, 1056, 1061, 1125, 1134, 1689, 1719
MslI CAYNNNNRTG 2 cut(s) 434, 1631
MspA1I CMGCKG 1 cut(s) 857
MspCI CTTAAG 1 cut(s) 1688
MspI CCGG 4 cut(s) 17, 75, 166, 175
MunI CAATTG 2 cut(s) 1143, 1367
Mva1269I GAATGC 2 cut(s) 251, 362
MwoI GCNNNNNNNGC 4 cut(s) 584, 1256, 1357, 1787
NdeI CATATG 1 cut(s) 450
NdeII GATC 2 cut(s) 1204, 1798
NheI GCTAGC 1 cut(s) 946
NlaIII CATG 8 cut(s) 292, 433, 611, 1187, 1263, 1463, 1503, 1761
NlaIV GGNNCC 3 cut(s) 170, 672, 1091
NmeAIII GCCGAG 1 cut(s) 1711
NmuCI GTSAC 4 cut(s) 88, 811, 1502, 1837
NspI RCATGY 2 cut(s) 1263, 1503
NspV TTCGAA 1 cut(s) 296
PaeI GCATGC 1 cut(s) 1263
PaqCI CACCTGC 1 cut(s) 994
PciSI GCTCTTC 1 cut(s) 1689
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 2 cut(s) 251, 362
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 4 cut(s) 301, 332, 683, 1516
PflFI GACNNNGTC 1 cut(s) 143
PleI GAGTC 2 cut(s) 811, 1558
PpsI GAGTC 2 cut(s) 811, 1558
PpuMI RGGWCCY 1 cut(s) 1090
PshAI GACNNNNGTC 1 cut(s) 1568
PshBI ATTAAT 2 cut(s) 1056, 1125
Psp5II RGGWCCY 1 cut(s) 1090
PspFI CCCAGC 1 cut(s) 340
PspN4I GGNNCC 3 cut(s) 170, 672, 1091
PspPI GGNCC 6 cut(s) 4, 338, 713, 869, 1090, 1454
PspPPI RGGWCCY 1 cut(s) 1090
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 1798
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 857
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 2 cut(s) 434, 1631
SapI GCTCTTC 1 cut(s) 1689
SaqAI TTAA 9 cut(s) 540, 956, 1007, 1056, 1061, 1125, 1134, 1689, 1719
Sau3AI GATC 2 cut(s) 1204, 1798
Sau96I GGNCC 6 cut(s) 4, 338, 713, 869, 1090, 1454
ScaI AGTACT 1 cut(s) 312
SchI GAGTC 2 cut(s) 812, 1558
SduI GDGCHC 1 cut(s) 697
SfaNI GCATC 9 cut(s) 601, 616, 977, 1162, 1497, 1646, 1702, 1768, 1852
SfuI TTCGAA 1 cut(s) 296
SinI GGWCC 2 cut(s) 4, 1090
SmiMI CAYNNNNRTG 2 cut(s) 434, 1631
SmlI CTYRAG 2 cut(s) 1688, 1805
SmoI CTYRAG 2 cut(s) 1688, 1805
SphI GCATGC 1 cut(s) 1263
SsiI CCGC 4 cut(s) 305, 535, 674, 1222
SspMI CTAG 4 cut(s) 308, 899, 947, 1157
TaaI ACNGT 2 cut(s) 241, 757
TaqI TCGA 5 cut(s) 24, 162, 296, 1562, 1831
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 4 cut(s) 301, 332, 683, 1516
Tru1I TTAA 9 cut(s) 540, 956, 1007, 1056, 1061, 1125, 1134, 1689, 1719
Tru9I TTAA 9 cut(s) 540, 956, 1007, 1056, 1061, 1125, 1134, 1689, 1719
TscAI CASTG 3 cut(s) 1224, 1601, 1659
TseFI GTSAC 4 cut(s) 88, 811, 1502, 1837
Tsp45I GTSAC 4 cut(s) 88, 811, 1502, 1837
TspDTI ATGAA 8 cut(s) 446, 497, 509, 632, 978, 1098, 1200, 1332
TspGWI ACGGA 1 cut(s) 1030
TspRI CASTG 3 cut(s) 1224, 1601, 1659
Tth111I GACNNNGTC 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 1688
VneI GTGCAC 1 cut(s) 693
VpaK11BI GGWCC 2 cut(s) 4, 1090
VspI ATTAAT 2 cut(s) 1056, 1125
XapI RAATTY 5 cut(s) 95, 620, 662, 850, 1444
XbaI TCTAGA 1 cut(s) 1156
XceI RCATGY 2 cut(s) 1263, 1503
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 4 cut(s) 308, 899, 947, 1157
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.