Rh6BG389500

Neurochondrin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010867
Physical Location & Seq
Forward (+)
61795372 .. 61800525
5154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG389500.1

Sequence Viewer

Length: 1875 bp
ATGGACCAATCGTCTCCGGCGCTCGATGACTGCTTGAAGCTACTGAAAGGCGAAAGAGACGAGCAGCGCCTCGCCGGACTTCTCCTCGTCACCAAATTCTGCAAAGGCGACGACCTCTCCTACCTCCTCACTATCTATGACGCCGTCGGCGTCCAATTTCTCGACCGGCTCCTCCGAACTGGAATGGGAAAGGGAAGCATAAGTGAAAACCAAGAGGCGTATTTGCAGCTTTCAGTTACTGTTCTTGCTGCATTCTGCCGTGTTCCTGAAATTGCTGCTTCGAATGACATGGTTTCGAAGATTCCGCTGGTACTGGAAGTTTTGTCCAAAGAATCAGGCCCGGCTGTTCTTGAAGAATGCTACGAGTTTCTATATTTGGTTTCGACGGCTTCTGAAGATGGAATCATGACATTTTACTCATCTGGGGGCATGAAAATGCTGGCTTCTCATATGCCCATTTTACCCGATGGTTCACATCAGATGAAAGTCAGTATGAAACTTGTGCAATTGCTACTAAATAAGTTCTATCCTGATCGCATTAACAATGACTATCTACCAGAGCTTTCAATGATTGTGGCTGCAATAGCAAGGCAATTTTCTGTCTTGCATGATGCTATGAAATTTGATGCGCTGCACATACTGACGGCCGTCTTCTCACCAAAATTTTCGGCACCGCTTTATGATTCTCTTCGTGTACTTCCCCAAAAAAATTGGCCCGATTATATGCGTGATGGTATTGCTGCCATTCTACAAAACCGTGTTGCACCTACTGAAAAGCTGCAGGCACTTATTTTGGCGGAGTCTATGGTGACGATATTCGGGGAAAAGTGGCTGGTAGGTCAGATAAATTCAGCTGATGGAAAAGGGCCTATTCCAACAGATAGGTGCTTAGTGCTAGTGCTGGAGCAATCAAGGGTTGAAGTTGCTGTTCTTCTGAATGAGCTAGCTTACTTAAAAGATGAAGCATCTAAGAAATCTTCACCCGCTGCTGAGACAATCCTTTTAAAGAAACGGAATGTGGCTATTGCCTTTTCCTTACTGGAAAAGATAATTAATTTAATATCAAATGCGAGTGAGAATGAAGGGGACCTTATCCACGAAAATACTTTGTCAATGGTCATTAATGGCCTTAATGAGACAATTGGTGTAGTTCTAGAGTATTTACAAGATGCAAAGGAACATGAACAAAGGAAGGGAGATGATCTTCTGGCTTCAGTGCGGGTTATAGGCAGCTATCTTGCAGAAGCACCTCTTGCATGCAGAGAGAAGGTTAGAGAACTTTTAGAGTATATGCTCTCTATTGAAGGTGAAGATGAACCAAGACCCTTCTATGCTATATGCTTTTTGCTTCCAATGCTGTGTCAATTGACAATGGAGGTCGAAGGATGTAAAGCGTTGATTTCTTGTGGAGGTCATAAGTCTGTTGTTGATTGCCTTGTAAATTTGATTGGGCCACATGGTTACAAGGTGGAGGATAGGGGCTGCATCTTTTTGGCATGTGACACCATCTTGAATCTTCTTCTAAAGAAAGAGCAAGTGCAAGCCCCATTGGATTATTCGACTCTCGTCAATCTATTGAAAGCGTTGGCACGCTGGACAGAGGGTGTAGATGACCCGTCAATCATAATGATGGCATCAAGTATTTGCACACTGCTGTTTGACTTTACTTCGGAGAAGGCTCTTCTTAAGCATCCCAACTTTGATGACAGCTGTCTTAATAATCTGTCTCGGCTCATTGCAAGAAGTATGGCTGCATGGGGACAGGATATGTCTGATGCTGCTAAAGCAGAAACAGATCTTCTTGAGATTGTTACAGCAGGATATTCTCGATGGGTCACTCGCTTCCCTTGTGTAAGAGATGCTGTTGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neurochondrin

Protein Analysis

624

Amino Acids

69.17

Weight (kDa)

4.99

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neurochondrin PF05536 4 - 587 1e-131 Neurochondrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 670
AciI CCGC 5 cut(s) 305, 674, 797, 984, 1219
AcoI YGGCCR 1 cut(s) 645
AcsI RAATTY 5 cut(s) 95, 620, 662, 847, 1441
AcuI CTGAAG 2 cut(s) 414, 1197
AcyI GRCGYC 2 cut(s) 141, 150
AfaI GTAC 2 cut(s) 312, 696
AflII CTTAAG 1 cut(s) 1685
AgsI TTSAA 7 cut(s) 37, 353, 567, 920, 1304, 1513, 1579
AhdI GACNNNNNGTC 1 cut(s) 10
AluBI AGCT 9 cut(s) 40, 229, 562, 778, 854, 943, 947, 1233, 1710
AluI AGCT 9 cut(s) 40, 229, 562, 778, 854, 943, 947, 1233, 1710
Alw26I GTCTC 5 cut(s) 18, 51, 986, 1130, 1731
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 6 cut(s) 337, 645, 713, 866, 1126, 1451
ApoI RAATTY 5 cut(s) 95, 620, 662, 847, 1441
AseI ATTAAT 2 cut(s) 1053, 1122
AspLEI GCGC 3 cut(s) 22, 69, 631
AspS9I GGNCC 6 cut(s) 4, 338, 714, 866, 1087, 1451
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 5 cut(s) 82, 648, 820, 972, 1319
AsuII TTCGAA 2 cut(s) 281, 296
AsuNHI GCTAGC 1 cut(s) 943
AvaII GGWCC 2 cut(s) 4, 1087
BanI GGYRCC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 643
BccI CCATC 7 cut(s) 392, 461, 725, 851, 1514, 1624, 1824
BceAI ACGGC 5 cut(s) 128, 243, 402, 632, 660
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 5 cut(s) 18, 51, 986, 1130, 1731
BfaI CTAG 3 cut(s) 896, 944, 1154
BfmI CTRYAG 1 cut(s) 779
BfoI RGCGCY 2 cut(s) 23, 70
BfrI CTTAAG 1 cut(s) 1685
BglII AGATCT 1 cut(s) 1795
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 2 cut(s) 4, 1087
BmeRI GACNNNNNGTC 1 cut(s) 10
BmgT120I GGNCC 6 cut(s) 4, 338, 714, 866, 1087, 1451
BmiI GGNNCC 3 cut(s) 170, 672, 1088
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 9 cut(s) 601, 616, 974, 1159, 1494, 1643, 1699, 1765, 1849
BmtI GCTAGC 1 cut(s) 947
BoxI GACNNNNGTC 3 cut(s) 647, 1565, 1710
BpiI GAAGAC 1 cut(s) 643
BpmI CTGGAG 1 cut(s) 923
Bpu14I TTCGAA 2 cut(s) 281, 296
BpuEI CTTGAG 1 cut(s) 1823
BpuMI CCSGG 1 cut(s) 341
BsaHI GRCGYC 2 cut(s) 141, 150
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 3 cut(s) 184, 318, 1044
Bse3DI GCAATG 1 cut(s) 1734
BseGI GGATG 2 cut(s) 1391, 1690
BseMI GCAATG 1 cut(s) 1734
BseMII CTCAG 1 cut(s) 981
BseNI ACTGG 3 cut(s) 184, 318, 1044
BseRI GAGGAG 3 cut(s) 74, 116, 161
BseX3I CGGCCG 1 cut(s) 645
BsgI GTGCAG 1 cut(s) 617
Bsh1285I CGRYCG 2 cut(s) 166, 648
BshFI GGCC 6 cut(s) 339, 647, 715, 868, 1128, 1453
BshNI GGYRCC 1 cut(s) 670
BsiEI CGRYCG 2 cut(s) 166, 648
BsiSI CCGG 4 cut(s) 17, 75, 166, 341
BslFI GGGAC 2 cut(s) 1100, 1773
BsmAI GTCTC 5 cut(s) 18, 51, 986, 1130, 1731
BsmBI CGTCTC 2 cut(s) 18, 51
BsmFI GGGAC 2 cut(s) 1100, 1773
BsmI GAATGC 2 cut(s) 251, 362
BsnI GGCC 6 cut(s) 339, 647, 715, 868, 1128, 1453
Bsp119I TTCGAA 2 cut(s) 281, 296
Bsp143I GATC 3 cut(s) 532, 1201, 1795
BspACI CCGC 5 cut(s) 305, 674, 797, 984, 1219
BspANI GGCC 6 cut(s) 339, 647, 715, 868, 1128, 1453
BspCNI CTCAG 1 cut(s) 982
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 3 cut(s) 170, 672, 1088
BspMAI CTGCAG 1 cut(s) 783
BspOI GCTAGC 1 cut(s) 947
BspQI GCTCTTC 1 cut(s) 1686
BspT104I TTCGAA 2 cut(s) 281, 296
BspT107I GGYRCC 1 cut(s) 670
BspTI CTTAAG 1 cut(s) 1685
BsrDI GCAATG 1 cut(s) 1734
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 3 cut(s) 184, 318, 1044
BssAI RCCGGY 1 cut(s) 165
BssMI GATC 3 cut(s) 532, 1201, 1795
BssNI GRCGYC 2 cut(s) 141, 150
Bst4CI ACNGT 2 cut(s) 241, 758
Bst6I CTCTTC 2 cut(s) 693, 1686
BstACI GRCGYC 2 cut(s) 141, 150
BstAFI CTTAAG 1 cut(s) 1685
BstAPI GCANNNNNTGC 1 cut(s) 1253
BstBI TTCGAA 2 cut(s) 281, 296
BstC8I GCNNGC 6 cut(s) 441, 783, 945, 1258, 1542, 1591
BstDEI CTNAG 3 cut(s) 889, 969, 990
BstF5I GGATG 2 cut(s) 1391, 1690
BstH2I RGCGCY 2 cut(s) 23, 70
BstHHI GCGC 3 cut(s) 22, 69, 631
BstKTI GATC 3 cut(s) 535, 1204, 1798
BstMAI GTCTC 5 cut(s) 18, 51, 986, 1130, 1731
BstMBI GATC 3 cut(s) 532, 1201, 1795
BstMCI CGRYCG 2 cut(s) 166, 648
BstMWI GCNNNNNNNGC 4 cut(s) 584, 1253, 1354, 1784
BstNSI RCATGY 2 cut(s) 1260, 1500
BstPAI GACNNNNGTC 3 cut(s) 647, 1565, 1710
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 1 cut(s) 779
BstV2I GAAGAC 1 cut(s) 643
BstX2I RGATCY 1 cut(s) 1795
BstYI RGATCY 1 cut(s) 1795
BstZI CGGCCG 1 cut(s) 645
BsuRI GGCC 6 cut(s) 339, 647, 715, 868, 1128, 1453
BtsCI GGATG 2 cut(s) 1391, 1690
BtsI GCAGTG 1 cut(s) 1649
BtsIMutI CAGTG 2 cut(s) 1221, 1649
Cac8I GCNNGC 6 cut(s) 441, 783, 945, 1258, 1542, 1591
CaiI CAGNNNCTG 1 cut(s) 239
CciI TCATGA 1 cut(s) 405
CfoI GCGC 3 cut(s) 22, 69, 631
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 6 cut(s) 4, 338, 714, 866, 1087, 1451
CseI GACGC 2 cut(s) 139, 149
Csp6I GTAC 2 cut(s) 311, 695
CspCI CAANNNNNGTGG 2 cut(s) 555, 590
CviAII CATG 9 cut(s) 289, 406, 430, 608, 1181, 1257, 1457, 1497, 1755
CviQI GTAC 2 cut(s) 311, 695
DdeI CTNAG 3 cut(s) 889, 969, 990
DpnI GATC 3 cut(s) 534, 1203, 1797
DpnII GATC 3 cut(s) 532, 1201, 1795
DraI TTTAAA 1 cut(s) 1005
DriI GACNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 645
EagI CGGCCG 1 cut(s) 645
Eam1104I CTCTTC 2 cut(s) 693, 1686
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 2 cut(s) 693, 1686
EciI GGCGGA 1 cut(s) 812
EclXI CGGCCG 1 cut(s) 645
Eco47I GGWCC 2 cut(s) 4, 1087
Eco52I CGGCCG 1 cut(s) 645
Eco57I CTGAAG 2 cut(s) 414, 1197
EcoO109I RGGNCCY 2 cut(s) 866, 1087
Esp3I CGTCTC 2 cut(s) 18, 51
FaeI CATG 9 cut(s) 292, 409, 433, 611, 1184, 1260, 1460, 1500, 1758
FalI AAGNNNNNCTT 4 cut(s) 1074, 1106, 1236, 1268
FaqI GGGAC 2 cut(s) 1100, 1773
FatI CATG 9 cut(s) 288, 405, 429, 607, 1180, 1256, 1456, 1496, 1754
FauI CCCGC 2 cut(s) 991, 1212
FauNDI CATATG 1 cut(s) 450
FokI GGATG 2 cut(s) 1398, 1677
FspBI CTAG 3 cut(s) 896, 944, 1154
GlaI GCGC 3 cut(s) 21, 68, 630
GsuI CTGGAG 1 cut(s) 923
HaeII RGCGCY 2 cut(s) 23, 70
HaeIII GGCC 6 cut(s) 339, 647, 715, 868, 1128, 1453
HapII CCGG 4 cut(s) 17, 75, 166, 341
HgaI GACGC 2 cut(s) 139, 149
HhaI GCGC 3 cut(s) 22, 69, 631
Hin1I GRCGYC 2 cut(s) 141, 150
Hin1II CATG 9 cut(s) 292, 409, 433, 611, 1184, 1260, 1460, 1500, 1758
Hin6I GCGC 3 cut(s) 20, 67, 629
HinP1I GCGC 3 cut(s) 20, 67, 629
HinfI GANTC 7 cut(s) 301, 332, 402, 683, 800, 1513, 1561
HpaII CCGG 4 cut(s) 17, 75, 166, 341
HphI GGTGA 5 cut(s) 82, 648, 820, 972, 1319
Hpy166II GTNNAC 2 cut(s) 473, 695
Hpy188I TCNGA 7 cut(s) 176, 394, 480, 843, 936, 1672, 1774
Hpy188III TCNNGA 9 cut(s) 161, 266, 350, 406, 530, 1154, 1510, 1802, 1827
Hpy8I GTNNAC 2 cut(s) 473, 695
Hpy99I CGWCG 3 cut(s) 113, 149, 388
HpyAV CCTTC 7 cut(s) 1076, 1186, 1261, 1298, 1336, 1376, 1669
HpyCH4III ACNGT 2 cut(s) 241, 758
HpyF10VI GCNNNNNNNGC 4 cut(s) 584, 1253, 1354, 1784
HpyF3I CTNAG 3 cut(s) 889, 969, 990
Hsp92I GRCGYC 2 cut(s) 141, 150
Hsp92II CATG 9 cut(s) 292, 409, 433, 611, 1184, 1260, 1460, 1500, 1758
HspAI GCGC 3 cut(s) 20, 67, 629
Kzo9I GATC 3 cut(s) 532, 1201, 1795
LguI GCTCTTC 1 cut(s) 1686
LmnI GCTCC 2 cut(s) 174, 904
LweI GCATC 9 cut(s) 601, 616, 974, 1159, 1494, 1643, 1699, 1765, 1849
MaeI CTAG 3 cut(s) 896, 944, 1154
MaeIII GTNAC 7 cut(s) 88, 235, 808, 1460, 1499, 1810, 1834
MalI GATC 3 cut(s) 534, 1203, 1797
MboI GATC 3 cut(s) 532, 1201, 1795
MfeI CAATTG 3 cut(s) 506, 1140, 1364
MflI RGATCY 1 cut(s) 1795
MlyI GAGTC 2 cut(s) 809, 1555
MmeI TCCRAC 1 cut(s) 899
MseI TTAA 9 cut(s) 540, 953, 1004, 1053, 1058, 1122, 1131, 1686, 1716
MslI CAYNNNNRTG 2 cut(s) 434, 1628
MspA1I CMGCKG 4 cut(s) 307, 854, 986, 1710
MspCI CTTAAG 1 cut(s) 1685
MspI CCGG 4 cut(s) 17, 75, 166, 341
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 3 cut(s) 506, 1140, 1364
Mva1269I GAATGC 2 cut(s) 251, 362
MwoI GCNNNNNNNGC 4 cut(s) 584, 1253, 1354, 1784
NciI CCSGG 1 cut(s) 341
NdeI CATATG 1 cut(s) 450
NdeII GATC 3 cut(s) 532, 1201, 1795
NheI GCTAGC 1 cut(s) 943
NlaIII CATG 9 cut(s) 292, 409, 433, 611, 1184, 1260, 1460, 1500, 1758
NlaIV GGNNCC 3 cut(s) 170, 672, 1088
NmeAIII GCCGAG 1 cut(s) 1708
NmuCI GTSAC 4 cut(s) 88, 808, 1499, 1834
NspI RCATGY 2 cut(s) 1260, 1500
NspV TTCGAA 2 cut(s) 281, 296
PaeI GCATGC 1 cut(s) 1260
PagI TCATGA 1 cut(s) 405
PciSI GCTCTTC 1 cut(s) 1686
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 2 cut(s) 251, 362
PfeI GAWTC 5 cut(s) 301, 332, 402, 683, 1513
PflFI GACNNNGTC 1 cut(s) 143
PleI GAGTC 2 cut(s) 808, 1555
PpsI GAGTC 2 cut(s) 808, 1555
PpuMI RGGWCCY 1 cut(s) 1087
PshAI GACNNNNGTC 3 cut(s) 647, 1565, 1710
PshBI ATTAAT 2 cut(s) 1053, 1122
Psp5II RGGWCCY 1 cut(s) 1087
PspN4I GGNNCC 3 cut(s) 170, 672, 1088
PspPI GGNCC 6 cut(s) 4, 338, 714, 866, 1087, 1451
PspPPI RGGWCCY 1 cut(s) 1087
PstI CTGCAG 1 cut(s) 783
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 1795
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 2 cut(s) 854, 1710
RsaI GTAC 2 cut(s) 312, 696
RsaNI GTAC 2 cut(s) 311, 695
RseI CAYNNNNRTG 2 cut(s) 434, 1628
SapI GCTCTTC 1 cut(s) 1686
SaqAI TTAA 9 cut(s) 540, 953, 1004, 1053, 1058, 1122, 1131, 1686, 1716
Sau3AI GATC 3 cut(s) 532, 1201, 1795
Sau96I GGNCC 6 cut(s) 4, 338, 714, 866, 1087, 1451
SchI GAGTC 2 cut(s) 809, 1555
ScrFI CCNGG 1 cut(s) 341
SfaNI GCATC 9 cut(s) 601, 616, 974, 1159, 1494, 1643, 1699, 1765, 1849
SfcI CTRYAG 1 cut(s) 779
SfuI TTCGAA 2 cut(s) 281, 296
SinI GGWCC 2 cut(s) 4, 1087
SmiMI CAYNNNNRTG 2 cut(s) 434, 1628
SmlI CTYRAG 2 cut(s) 1685, 1802
SmoI CTYRAG 2 cut(s) 1685, 1802
SphI GCATGC 1 cut(s) 1260
SsiI CCGC 5 cut(s) 305, 674, 797, 984, 1219
SspMI CTAG 3 cut(s) 896, 944, 1154
StyD4I CCNGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 241, 758
TaqI TCGA 8 cut(s) 24, 162, 281, 296, 383, 1380, 1559, 1828
TatI WGTACW 1 cut(s) 694
TfiI GAWTC 5 cut(s) 301, 332, 402, 683, 1513
Tru1I TTAA 9 cut(s) 540, 953, 1004, 1053, 1058, 1122, 1131, 1686, 1716
Tru9I TTAA 9 cut(s) 540, 953, 1004, 1053, 1058, 1122, 1131, 1686, 1716
TscAI CASTG 2 cut(s) 1221, 1656
TseFI GTSAC 4 cut(s) 88, 808, 1499, 1834
Tsp45I GTSAC 4 cut(s) 88, 808, 1499, 1834
TspDTI ATGAA 8 cut(s) 446, 497, 509, 632, 975, 1095, 1197, 1329
TspGWI ACGGA 1 cut(s) 1027
TspRI CASTG 2 cut(s) 1221, 1656
Tth111I GACNNNGTC 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 1685
VpaK11BI GGWCC 2 cut(s) 4, 1087
VspI ATTAAT 2 cut(s) 1053, 1122
XapI RAATTY 5 cut(s) 95, 620, 662, 847, 1441
XbaI TCTAGA 1 cut(s) 1153
XceI RCATGY 2 cut(s) 1260, 1500
XspI CTAG 3 cut(s) 896, 944, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.