Rw6G033210

Neurochondrin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010867
Physical Location & Seq
Forward (+)
57700817 .. 57706446
5630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033210.1

Sequence Viewer

Length: 1875 bp
ATGGACCAATCGTCTCCGGCGCTCGATGACTGCTTGAAGCTACTGAAAGGCGAAAGAGACGAGCAGCGCCTCGCCGGACTTCTCCTCGTCACCAAATTCTGCAAAGGAGACGACCTCTCCTCCCTCCTCACTATCTATGACGCCGTCGGCGTCCAATTTCTCGACCGGCTCCTCCGGACTGGAATGGGAAAGGGAAGCATAAGCGAAAACCAAGAGGCGTATTTGCAGCTTTCAGTTACTGTTCTTGCTGCATTCTGCCGTGTTCCTGAAATTGCTGCTTCAAATGACATGGTTTCGAAGATTCCGCTAGTACTTGAAGTTTTATCGAAAGAATCAGGCCCAGCTGTTCTTGAAGAATGCTACGAGTTTCTATATTTGGTTTCTACGGCTTCTGAAGATGGAATTATGACATTTTACTCATCTGGGGGCATGAAAATGCTGGCTTCTCATATGCCCAATTTACCTGATGGTTCACATCAGATGAAAATCACTATGAAACTTGTGCAGTTGCTACTAAATAAGTTCTATCCTGACCGCAATAACAATGACTATCTACCAGAGCTGTCAATAATTGTGGCTGCAATAGCAAGGCAATTTTCTGTCTTGCATGATGCTATGAAATTTGATGCGCTGCACATACTGACGGCCATCTTCTCACCAAAATTTTCGGCACCGCTTTATGATTCTCTTCGTGCACTTCCCGAAAAAAATTGGCCCGATTATATGCGTGATGGTATTGCTGCCATTCTACAAAACCGTGTTGCACCTACTGAAAAGCTTCAGGCACTTATTTTGGCTGAGTCTATGGTGACGATATTCGGGGAAAAGTGGCTGGTAGGTCAGATAAATTCAGCTGATGGAAAAGGGCCATTTCCAACAGATAGGTGCTTAGTGCTAGTGCTGGAGCAATCAAGGGTTGAAGTTGCTGTTCTTCTGAATGAGCTAGCTTACTTAAAAGATGAAGCATCTAAGAAATCTTCACCCGCTGCTGAGACAATCCTTTTAAAGAAACGGAATGTAGCTATTGCCTTTTCCTTACTGGAAAAGATAATTAATTTAATATCAAATGCGAGTGAGAATGAAGGGGACCTTATCCATGAATATACTTTGTCAATGGTCATTAATGGCCTTAATGAGACAATTGGTGTAGTTCTAGAGTATTTACAAGATGCAAAGGAACATGAACAAAGAAAGGGAGATGATCTTCTGGCTTCAGTGCGGGTAATAGGCAGCTATCTTGCAGAAGCACCTCTTGCATGCAGAGAGAAGGTTAGAGAACTTTTAGAGTATATGCTCTCTATTGAAGGTGAAGATGAACCAAGACCCTTCTACGCTATATGCTTTTTGCTTCCAATGCTGTGTCAATTGACAATGGAGGTCGAAGGATGTAAAGCATTGATTTCTTGTGGAGGTCAGAAGTCTGTTGTTGATTGCCTTGTAAATTTGATTGGGCCACATGGTTACAAGGTGGAGGATAGGGGCTGCATCTTTTTGGCATGTGACACCATCTTGAATCTTCTTCTGAAGAAAGAGCAAGTGCAAGCCCCATTGGATTATTTGACTCTTGTCAATCTATTGAAAGCGTTGGCACACTGGACAGAGGGTGTAGATGACCCGTCAATCATAATGATGGCATCAAGTATTTGCACACTGCTGTTTGACTTTACTTCGGAGAAGGCTCTTCTTAAGCATCCCAACTTTGATGACAGCTGTCTTAATAATCTGTCTCGGCTCATTGCAAGAAGTATGGCTGCATGGGGACAGGATATGTCTGATGCTGCTAAAGCAGAAACAGATCTTCTTGAGATTGTTACGGCAGGATATTCTCGATGGGTCACTCGCTTCCCTTGTGTAAGAGATGCTGTTGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neurochondrin

Protein Analysis

624

Amino Acids

69.17

Weight (kDa)

4.93

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neurochondrin PF05536 4 - 587 7e-132 Neurochondrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 670
AccIII TCCGGA 1 cut(s) 174
AciI CCGC 5 cut(s) 305, 535, 674, 984, 1219
AcoI YGGCCR 1 cut(s) 645
AcsI RAATTY 5 cut(s) 95, 620, 662, 847, 1441
AcuI CTGAAG 4 cut(s) 414, 764, 1197, 1544
AcyI GRCGYC 2 cut(s) 141, 150
AfaI GTAC 1 cut(s) 312
AflII CTTAAG 1 cut(s) 1685
AgsI TTSAA 8 cut(s) 37, 282, 317, 353, 920, 1304, 1513, 1579
AhdI GACNNNNNGTC 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 6 cut(s) 18, 51, 102, 986, 1130, 1731
Alw44I GTGCAC 1 cut(s) 693
AlwNI CAGNNNCTG 1 cut(s) 239
Aor13HI TCCGGA 1 cut(s) 174
AoxI GGCC 6 cut(s) 337, 645, 713, 866, 1126, 1451
ApaLI GTGCAC 1 cut(s) 693
ApoI RAATTY 5 cut(s) 95, 620, 662, 847, 1441
AseI ATTAAT 2 cut(s) 1053, 1122
Asp700I GAANNNNTTC 1 cut(s) 777
AspLEI GCGC 3 cut(s) 22, 69, 631
AspS9I GGNCC 6 cut(s) 4, 338, 714, 866, 1087, 1451
AsuHPI GGTGA 5 cut(s) 82, 648, 820, 972, 1319
AsuII TTCGAA 1 cut(s) 296
AsuNHI GCTAGC 1 cut(s) 943
AvaII GGWCC 2 cut(s) 4, 1087
BaeGI GKGCMC 1 cut(s) 697
BanI GGYRCC 1 cut(s) 670
Bbv12I GWGCWC 1 cut(s) 697
BccI CCATC 8 cut(s) 392, 461, 656, 725, 851, 1514, 1624, 1824
BceAI ACGGC 5 cut(s) 128, 243, 402, 660, 1830
BcoDI GTCTC 6 cut(s) 18, 51, 102, 986, 1130, 1731
BfaI CTAG 4 cut(s) 308, 896, 944, 1154
BfoI RGCGCY 2 cut(s) 23, 70
BfrI CTTAAG 1 cut(s) 1685
BglII AGATCT 1 cut(s) 1795
BmcAI AGTACT 1 cut(s) 312
Bme18I GGWCC 2 cut(s) 4, 1087
BmeRI GACNNNNNGTC 1 cut(s) 10
BmgT120I GGNCC 6 cut(s) 4, 338, 714, 866, 1087, 1451
BmiI GGNNCC 3 cut(s) 170, 672, 1088
BmsI GCATC 9 cut(s) 601, 616, 974, 1159, 1494, 1643, 1699, 1765, 1849
BmtI GCTAGC 1 cut(s) 947
BoxI GACNNNNGTC 2 cut(s) 1565, 1710
BplI GAGNNNNNCTC 2 cut(s) 99, 131
BpmI CTGGAG 1 cut(s) 923
Bpu14I TTCGAA 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 1823
BsaBI GATNNNNATC 1 cut(s) 485
BsaHI GRCGYC 2 cut(s) 141, 150
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 4 cut(s) 101, 104, 131, 134
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 3 cut(s) 184, 1044, 1598
Bse3DI GCAATG 1 cut(s) 1734
Bse8I GATNNNNATC 1 cut(s) 485
BseAI TCCGGA 1 cut(s) 174
BseGI GGATG 2 cut(s) 1391, 1690
BseJI GATNNNNATC 1 cut(s) 485
BseMI GCAATG 1 cut(s) 1734
BseMII CTCAG 2 cut(s) 789, 981
BseNI ACTGG 3 cut(s) 184, 1044, 1598
BseRI GAGGAG 4 cut(s) 74, 109, 116, 161
BseSI GKGCMC 1 cut(s) 697
BseYI CCCAGC 1 cut(s) 340
BsgI GTGCAG 2 cut(s) 524, 617
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 6 cut(s) 339, 647, 715, 868, 1128, 1453
BshNI GGYRCC 1 cut(s) 670
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 4 cut(s) 17, 75, 166, 175
BslFI GGGAC 2 cut(s) 1100, 1773
BsmAI GTCTC 6 cut(s) 18, 51, 102, 986, 1130, 1731
BsmBI CGTCTC 3 cut(s) 18, 51, 102
BsmFI GGGAC 2 cut(s) 1100, 1773
BsmI GAATGC 2 cut(s) 251, 362
BsnI GGCC 6 cut(s) 339, 647, 715, 868, 1128, 1453
Bsp119I TTCGAA 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 697
Bsp13I TCCGGA 1 cut(s) 174
Bsp143I GATC 2 cut(s) 1201, 1795
BspACI CCGC 5 cut(s) 305, 535, 674, 984, 1219
BspANI GGCC 6 cut(s) 339, 647, 715, 868, 1128, 1453
BspCNI CTCAG 2 cut(s) 790, 982
BspEI TCCGGA 1 cut(s) 174
BspLI GGNNCC 3 cut(s) 170, 672, 1088
BspOI GCTAGC 1 cut(s) 947
BspQI GCTCTTC 1 cut(s) 1686
BspT104I TTCGAA 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 670
BspTI CTTAAG 1 cut(s) 1685
BsrDI GCAATG 1 cut(s) 1734
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 3 cut(s) 184, 1044, 1598
BssAI RCCGGY 1 cut(s) 165
BssMI GATC 2 cut(s) 1201, 1795
BssNI GRCGYC 2 cut(s) 141, 150
Bst4CI ACNGT 2 cut(s) 241, 758
Bst6I CTCTTC 2 cut(s) 693, 1686
BstACI GRCGYC 2 cut(s) 141, 150
BstAFI CTTAAG 1 cut(s) 1685
BstAPI GCANNNNNTGC 1 cut(s) 1253
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 4 cut(s) 441, 945, 1258, 1542
BstDEI CTNAG 4 cut(s) 798, 889, 969, 990
BstF5I GGATG 2 cut(s) 1391, 1690
BstH2I RGCGCY 2 cut(s) 23, 70
BstHHI GCGC 3 cut(s) 22, 69, 631
BstKTI GATC 2 cut(s) 1204, 1798
BstMAI GTCTC 6 cut(s) 18, 51, 102, 986, 1130, 1731
BstMBI GATC 2 cut(s) 1201, 1795
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 4 cut(s) 584, 1253, 1354, 1784
BstNSI RCATGY 2 cut(s) 1260, 1500
BstPAI GACNNNNGTC 2 cut(s) 1565, 1710
BstSLI GKGCMC 1 cut(s) 697
BstX2I RGATCY 1 cut(s) 1795
BstYI RGATCY 1 cut(s) 1795
BsuRI GGCC 6 cut(s) 339, 647, 715, 868, 1128, 1453
BtsCI GGATG 2 cut(s) 1391, 1690
BtsI GCAGTG 1 cut(s) 1649
BtsIMutI CAGTG 3 cut(s) 1221, 1591, 1649
Cac8I GCNNGC 4 cut(s) 441, 945, 1258, 1542
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 3 cut(s) 22, 69, 631
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 6 cut(s) 4, 338, 714, 866, 1087, 1451
CseI GACGC 2 cut(s) 139, 149
Csp6I GTAC 1 cut(s) 311
CspCI CAANNNNNGTGG 2 cut(s) 555, 590
CviAII CATG 9 cut(s) 289, 430, 608, 1097, 1181, 1257, 1457, 1497, 1755
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 4 cut(s) 798, 889, 969, 990
DpnI GATC 2 cut(s) 1203, 1797
DpnII GATC 2 cut(s) 1201, 1795
DraI TTTAAA 1 cut(s) 1005
DriI GACNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 645
Eam1104I CTCTTC 2 cut(s) 693, 1686
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 2 cut(s) 693, 1686
Eco47I GGWCC 2 cut(s) 4, 1087
Eco57I CTGAAG 4 cut(s) 414, 764, 1197, 1544
EcoO109I RGGNCCY 1 cut(s) 1087
Esp3I CGTCTC 3 cut(s) 18, 51, 102
FaeI CATG 9 cut(s) 292, 433, 611, 1100, 1184, 1260, 1460, 1500, 1758
FalI AAGNNNNNCTT 4 cut(s) 1074, 1106, 1236, 1268
FaqI GGGAC 2 cut(s) 1100, 1773
FatI CATG 9 cut(s) 288, 429, 607, 1096, 1180, 1256, 1456, 1496, 1754
FauI CCCGC 2 cut(s) 991, 1212
FauNDI CATATG 1 cut(s) 450
FokI GGATG 2 cut(s) 1398, 1677
FspBI CTAG 4 cut(s) 308, 896, 944, 1154
GlaI GCGC 3 cut(s) 21, 68, 630
GsaI CCCAGC 1 cut(s) 344
GsuI CTGGAG 1 cut(s) 923
HaeII RGCGCY 2 cut(s) 23, 70
HaeIII GGCC 6 cut(s) 339, 647, 715, 868, 1128, 1453
HapII CCGG 4 cut(s) 17, 75, 166, 175
HgaI GACGC 2 cut(s) 139, 149
HhaI GCGC 3 cut(s) 22, 69, 631
Hin1I GRCGYC 2 cut(s) 141, 150
Hin1II CATG 9 cut(s) 292, 433, 611, 1100, 1184, 1260, 1460, 1500, 1758
Hin6I GCGC 3 cut(s) 20, 67, 629
HinP1I GCGC 3 cut(s) 20, 67, 629
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 6 cut(s) 301, 332, 683, 800, 1513, 1561
HpaII CCGG 4 cut(s) 17, 75, 166, 175
HphI GGTGA 5 cut(s) 82, 648, 820, 972, 1319
Hpy166II GTNNAC 2 cut(s) 473, 695
Hpy188I TCNGA 8 cut(s) 394, 480, 843, 936, 1416, 1524, 1672, 1774
Hpy8I GTNNAC 2 cut(s) 473, 695
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 6 cut(s) 1076, 1261, 1298, 1336, 1376, 1669
HpyCH4III ACNGT 2 cut(s) 241, 758
HpyF10VI GCNNNNNNNGC 4 cut(s) 584, 1253, 1354, 1784
HpyF3I CTNAG 4 cut(s) 798, 889, 969, 990
Hsp92I GRCGYC 2 cut(s) 141, 150
Hsp92II CATG 9 cut(s) 292, 433, 611, 1100, 1184, 1260, 1460, 1500, 1758
HspAI GCGC 3 cut(s) 20, 67, 629
Kpn2I TCCGGA 1 cut(s) 174
Kzo9I GATC 2 cut(s) 1201, 1795
LguI GCTCTTC 1 cut(s) 1686
LmnI GCTCC 2 cut(s) 174, 904
LweI GCATC 9 cut(s) 601, 616, 974, 1159, 1494, 1643, 1699, 1765, 1849
MaeI CTAG 4 cut(s) 308, 896, 944, 1154
MaeIII GTNAC 7 cut(s) 88, 235, 808, 1460, 1499, 1810, 1834
MalI GATC 2 cut(s) 1203, 1797
MboI GATC 2 cut(s) 1201, 1795
MfeI CAATTG 2 cut(s) 1140, 1364
MflI RGATCY 1 cut(s) 1795
MhlI GDGCHC 1 cut(s) 697
MlyI GAGTC 2 cut(s) 809, 1555
MmeI TCCRAC 1 cut(s) 899
MroI TCCGGA 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 777
MseI TTAA 8 cut(s) 953, 1004, 1053, 1058, 1122, 1131, 1686, 1716
MslI CAYNNNNRTG 2 cut(s) 434, 1628
MspA1I CMGCKG 4 cut(s) 344, 854, 986, 1710
MspCI CTTAAG 1 cut(s) 1685
MspI CCGG 4 cut(s) 17, 75, 166, 175
MunI CAATTG 2 cut(s) 1140, 1364
Mva1269I GAATGC 2 cut(s) 251, 362
MwoI GCNNNNNNNGC 4 cut(s) 584, 1253, 1354, 1784
NdeI CATATG 1 cut(s) 450
NdeII GATC 2 cut(s) 1201, 1795
NheI GCTAGC 1 cut(s) 943
NlaIII CATG 9 cut(s) 292, 433, 611, 1100, 1184, 1260, 1460, 1500, 1758
NlaIV GGNNCC 3 cut(s) 170, 672, 1088
NmeAIII GCCGAG 1 cut(s) 1708
NmuCI GTSAC 4 cut(s) 88, 808, 1499, 1834
NspI RCATGY 2 cut(s) 1260, 1500
NspV TTCGAA 1 cut(s) 296
PaeI GCATGC 1 cut(s) 1260
PciSI GCTCTTC 1 cut(s) 1686
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 2 cut(s) 251, 362
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 4 cut(s) 301, 332, 683, 1513
PflFI GACNNNGTC 1 cut(s) 143
PleI GAGTC 2 cut(s) 808, 1555
PpsI GAGTC 2 cut(s) 808, 1555
PpuMI RGGWCCY 1 cut(s) 1087
PshAI GACNNNNGTC 2 cut(s) 1565, 1710
PshBI ATTAAT 2 cut(s) 1053, 1122
Psp5II RGGWCCY 1 cut(s) 1087
PspFI CCCAGC 1 cut(s) 340
PspN4I GGNNCC 3 cut(s) 170, 672, 1088
PspPI GGNCC 6 cut(s) 4, 338, 714, 866, 1087, 1451
PspPPI RGGWCCY 1 cut(s) 1087
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 1795
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 3 cut(s) 344, 854, 1710
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 2 cut(s) 434, 1628
SapI GCTCTTC 1 cut(s) 1686
SaqAI TTAA 8 cut(s) 953, 1004, 1053, 1058, 1122, 1131, 1686, 1716
Sau3AI GATC 2 cut(s) 1201, 1795
Sau96I GGNCC 6 cut(s) 4, 338, 714, 866, 1087, 1451
ScaI AGTACT 1 cut(s) 312
SchI GAGTC 2 cut(s) 809, 1555
SduI GDGCHC 1 cut(s) 697
SfaNI GCATC 9 cut(s) 601, 616, 974, 1159, 1494, 1643, 1699, 1765, 1849
SfuI TTCGAA 1 cut(s) 296
SinI GGWCC 2 cut(s) 4, 1087
SmiMI CAYNNNNRTG 2 cut(s) 434, 1628
SmlI CTYRAG 2 cut(s) 1685, 1802
SmoI CTYRAG 2 cut(s) 1685, 1802
SphI GCATGC 1 cut(s) 1260
SsiI CCGC 5 cut(s) 305, 535, 674, 984, 1219
SspMI CTAG 4 cut(s) 308, 896, 944, 1154
TaaI ACNGT 2 cut(s) 241, 758
TaqI TCGA 6 cut(s) 24, 162, 296, 326, 1380, 1828
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 4 cut(s) 301, 332, 683, 1513
Tru1I TTAA 8 cut(s) 953, 1004, 1053, 1058, 1122, 1131, 1686, 1716
Tru9I TTAA 8 cut(s) 953, 1004, 1053, 1058, 1122, 1131, 1686, 1716
TscAI CASTG 3 cut(s) 1221, 1598, 1656
TseFI GTSAC 4 cut(s) 88, 808, 1499, 1834
Tsp45I GTSAC 4 cut(s) 88, 808, 1499, 1834
TspDTI ATGAA 9 cut(s) 446, 497, 509, 632, 975, 1095, 1113, 1197, 1329
TspGWI ACGGA 1 cut(s) 1027
TspRI CASTG 3 cut(s) 1221, 1598, 1656
Tth111I GACNNNGTC 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 1685
VneI GTGCAC 1 cut(s) 693
VpaK11BI GGWCC 2 cut(s) 4, 1087
VspI ATTAAT 2 cut(s) 1053, 1122
XapI RAATTY 5 cut(s) 95, 620, 662, 847, 1441
XbaI TCTAGA 1 cut(s) 1153
XceI RCATGY 2 cut(s) 1260, 1500
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 4 cut(s) 308, 896, 944, 1154
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.